Literature DB >> 21578164

Diaqua-bis[1-hydroxy-2-(imidazol-3-ium-1-yl)-1,1'-ethyl-idenediphophonato-κO,O']zinc(II).

Eleonora Freire1, Daniel R Vega.   

Abstract

In the title complex, [Zn(C(5)H(9)NO(7)P(2))(2)(H(2)O)(2)], the zinc atom is coordinated by two bidentate zoledronate [zoledronate = (2-(1-imidazole)-1-hydr-oxy-1,1'-ethyl-idenediphophonate)] ligands and two water mol-ecules. The coordination number is 6. There is one half-mol-ecule in the asymmetric unit with the zinc atom located on a crystallographic inversion centre. The anion exists as a zwitterion with an overall charge of -1; the protonated nitro-gen in the ring has a positive charge and the two phospho-nates groups each have a single negative charge. There are two intra-molecular O-H⋯O hydrogen bonds. The mol-ecules are linked into a chain by inter-molecular O-H⋯O hydrogen bonds. Adjacent chains are further linked by O-H⋯O hydrogen bonds involving the aqua ligands. An N-H⋯O inter-action is also observed.

Entities:  

Year:  2009        PMID: 21578164      PMCID: PMC2971396          DOI: 10.1107/S1600536809042858

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to bis­phospho­nates, see: Fleisch et al. (1968 ▶); Green et al. (1994 ▶); Fleisch (2000 ▶); Ross et al. (2004 ▶); Smith (2005 ▶); Ralston et al. (1989 ▶); Reid et al. (2005 ▶); Rauch & Glorieux (2005 ▶); Chesnut et al. (2004 ▶). For structures of transition metal (Ni, Co and Cu) complexes with the zoledronate anion, see: Cao et al. (2007, 2008). For metal complexes of other bis­phospho­nates (Etidronate and Pamidronate), see: Fernández et al. (2002 ▶); Li et al. (2008 ▶); Chen et al. (2008 ▶); Uchtman (1972 ▶). For a penta­coordinated zinc(II)–zoledronate complex, see: Freire & Vega (2009 ▶). For bond distances and angles in related structures, see: Coiro & Lamba (1989 ▶); Vega et al. (1996 ▶, 1998 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

[Zn(C5H9N2O7P2)2(H2O)2] M = 643.57 Triclinic, a = 7.457 (1) Å b = 8.408 (2) Å c = 9.843 (2) Å α = 105.06 (3)° β = 112.23 (3)° γ = 97.05 (3)° V = 534.5 (2) Å3 Z = 1 Mo Kα radiation μ = 1.54 mm−1 T = 293 K 0.18 × 0.11 × 0.05 mm

Data collection

Rigaku AFC6 diffractometer diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.82, T max = 0.92 2426 measured reflections 1990 independent reflections 1236 reflections with I > 2σ(I) R int = 0.050 3 standard reflections every 150 reflections intensity decay: <3%

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.152 S = 1.04 1990 reflections 160 parameters H-atom parameters constrained Δρmax = 0.84 e Å−3 Δρmin = −0.94 e Å−3 Data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1988 ▶); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: MSC/AFC Diffractometer Control Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809042858/bq2165sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809042858/bq2165Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C5H9N2O7P2)2(H2O)2]Z = 1
Mr = 643.57F(000) = 328
Triclinic, P1Dx = 1.999 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.457 (1) ÅCell parameters from 42 reflections
b = 8.408 (2) Åθ = 8–18°
c = 9.843 (2) ŵ = 1.54 mm1
α = 105.06 (3)°T = 293 K
β = 112.23 (3)°Prism, colorless
γ = 97.05 (3)°0.18 × 0.11 × 0.05 mm
V = 534.5 (2) Å3
Rigaku AFC6 Difractometer diffractometer1236 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.050
graphiteθmax = 25.5°, θmin = 2.4°
ω/2θ scansh = −9→9
Absorption correction: ψ scan (North et al., 1968)k = −1→10
Tmin = 0.82, Tmax = 0.92l = −11→11
2426 measured reflections3 standard reflections every 150 reflections
1990 independent reflections intensity decay: <3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0781P)2] where P = (Fo2 + 2Fc2)/3
1990 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.84 e Å3
0 restraintsΔρmin = −0.94 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Zn10.50000.50000.50000.0266 (4)
P10.8731 (2)0.77240 (19)0.52403 (17)0.0172 (4)
P20.8422 (2)0.77671 (19)0.82873 (17)0.0186 (4)
O110.7109 (6)0.6106 (5)0.4453 (4)0.0211 (9)
O120.7749 (6)0.9268 (5)0.5228 (5)0.0242 (10)
H120.84031.01490.52640.036*
O131.0242 (6)0.7849 (5)0.4574 (5)0.0217 (9)
O210.6875 (6)0.6116 (5)0.7361 (5)0.0253 (10)
O220.7342 (6)0.9253 (5)0.8129 (5)0.0254 (10)
H220.80211.02160.86910.038*
O230.9654 (7)0.8002 (5)0.9969 (5)0.0249 (10)
O11.1578 (6)0.9545 (5)0.8097 (5)0.0261 (10)
H11.10191.03260.81400.039*
N11.2533 (8)0.6520 (6)0.8864 (6)0.0224 (11)
N21.3599 (9)0.5904 (8)1.0957 (7)0.0372 (15)
H21.36780.53881.16180.045*
C11.0088 (9)0.7937 (7)0.7310 (6)0.0183 (13)
C21.1243 (10)0.6535 (8)0.7302 (7)0.0271 (15)
H2A1.02880.54390.67190.032*
H2B1.20670.66800.67590.032*
C31.2149 (10)0.5438 (9)0.9533 (8)0.0315 (16)
H31.10520.45090.90840.038*
C51.4298 (10)0.7711 (8)0.9896 (8)0.0319 (16)
H51.49290.86110.97220.038*
C41.4926 (12)0.7303 (10)1.1212 (8)0.042 (2)
H41.60680.78851.21270.051*
O1W0.3851 (6)0.7142 (6)0.4904 (6)0.0349 (12)
H1WA0.46450.80740.52730.052*
H1WB0.27030.72450.46680.052*
U11U22U33U12U13U23
Zn10.0278 (7)0.0212 (6)0.0247 (6)0.0057 (5)0.0079 (5)0.0030 (5)
P10.0177 (8)0.0145 (8)0.0173 (8)0.0054 (6)0.0056 (7)0.0043 (6)
P20.0194 (8)0.0157 (8)0.0150 (8)0.0029 (7)0.0048 (7)0.0008 (6)
O110.020 (2)0.024 (2)0.014 (2)0.0010 (19)0.0059 (18)0.0015 (17)
O120.026 (2)0.020 (2)0.035 (3)0.0118 (19)0.016 (2)0.015 (2)
O130.022 (2)0.019 (2)0.025 (2)0.0082 (18)0.0116 (19)0.0051 (18)
O210.029 (3)0.021 (2)0.017 (2)0.000 (2)0.006 (2)0.0027 (18)
O220.028 (2)0.020 (2)0.024 (2)0.0100 (19)0.009 (2)0.0019 (19)
O230.035 (3)0.021 (2)0.015 (2)0.005 (2)0.007 (2)0.0037 (18)
O10.021 (2)0.018 (2)0.030 (2)0.0008 (19)0.007 (2)0.0003 (19)
N10.023 (3)0.022 (3)0.021 (3)0.010 (2)0.006 (2)0.008 (2)
N20.052 (4)0.039 (4)0.032 (3)0.018 (3)0.020 (3)0.025 (3)
C10.023 (3)0.017 (3)0.017 (3)0.010 (3)0.007 (3)0.007 (2)
C20.029 (4)0.023 (3)0.019 (3)0.010 (3)0.002 (3)0.004 (3)
C30.027 (4)0.031 (4)0.044 (4)0.013 (3)0.016 (3)0.022 (3)
C50.027 (4)0.026 (4)0.037 (4)0.008 (3)0.007 (3)0.012 (3)
C40.048 (5)0.042 (5)0.025 (4)0.020 (4)0.000 (3)0.013 (3)
O1W0.018 (2)0.022 (2)0.059 (3)0.007 (2)0.013 (2)0.011 (2)
Zn1—O11i2.042 (4)O1—H10.8201
Zn1—O112.042 (4)N1—C31.317 (8)
Zn1—O212.079 (4)N1—C51.379 (8)
Zn1—O21i2.079 (4)N1—C21.478 (7)
Zn1—O1Wi2.096 (4)N2—C31.323 (9)
Zn1—O1W2.096 (4)N2—C41.341 (9)
P1—O111.501 (4)N2—H20.8600
P1—O131.509 (4)C1—C21.543 (8)
P1—O121.567 (4)C2—H2A0.9700
P1—C11.847 (6)C2—H2B0.9700
P2—O211.498 (4)C3—H30.9300
P2—O231.502 (4)C5—C41.352 (9)
P2—O221.578 (4)C5—H50.9300
P2—C11.850 (6)C4—H40.9300
O12—H120.8200O1W—H1WA0.8200
O22—H220.8200O1W—H1WB0.8200
O1—C11.448 (7)
O11i—Zn1—O11180.0C1—O1—H1109.4
O11i—Zn1—O2189.35 (16)C3—N1—C5108.8 (6)
O11—Zn1—O2190.65 (16)C3—N1—C2126.2 (6)
O11i—Zn1—O21i90.65 (16)C5—N1—C2125.0 (5)
O11—Zn1—O21i89.35 (16)C3—N2—C4109.7 (6)
O21—Zn1—O21i180.0C3—N2—H2125.1
O11i—Zn1—O1Wi86.18 (18)C4—N2—H2125.1
O11—Zn1—O1Wi93.82 (18)O1—C1—C2106.5 (5)
O21—Zn1—O1Wi87.37 (18)O1—C1—P1108.5 (4)
O21i—Zn1—O1Wi92.63 (18)C2—C1—P1105.0 (4)
O11i—Zn1—O1W93.82 (18)O1—C1—P2110.8 (4)
O11—Zn1—O1W86.18 (18)C2—C1—P2112.6 (4)
O21—Zn1—O1W92.63 (18)P1—C1—P2113.1 (3)
O21i—Zn1—O1W87.37 (18)N1—C2—C1114.5 (5)
O1Wi—Zn1—O1W180.000 (1)N1—C2—H2A108.6
O11—P1—O13115.5 (2)C1—C2—H2A108.6
O11—P1—O12108.9 (2)N1—C2—H2B108.6
O13—P1—O12109.9 (2)C1—C2—H2B108.6
O11—P1—C1108.2 (3)H2A—C2—H2B107.6
O13—P1—C1107.9 (3)N1—C3—N2108.0 (6)
O12—P1—C1106.0 (3)N1—C3—H3126.0
O21—P2—O23115.7 (2)N2—C3—H3126.0
O21—P2—O22108.0 (3)C4—C5—N1106.1 (6)
O23—P2—O22110.9 (2)C4—C5—H5127.0
O21—P2—C1107.4 (3)N1—C5—H5127.0
O23—P2—C1109.4 (3)N2—C4—C5107.4 (6)
O22—P2—C1104.9 (3)N2—C4—H4126.3
P1—O11—Zn1134.2 (2)C5—C4—H4126.3
P1—O12—H12117.6Zn1—O1W—H1WA118.1
P2—O21—Zn1132.6 (3)Zn1—O1W—H1WB130.4
P2—O22—H22116.2H1WA—O1W—H1WB110.8
O13—P1—O11—Zn1167.0 (3)O12—P1—C1—P263.4 (3)
O12—P1—O11—Zn1−68.8 (4)O21—P2—C1—O1177.3 (4)
C1—P1—O11—Zn146.0 (4)O23—P2—C1—O1−56.4 (4)
O21—Zn1—O11—P1−30.0 (4)O22—P2—C1—O162.6 (4)
O21i—Zn1—O11—P1150.0 (4)O21—P2—C1—C2−63.6 (5)
O1Wi—Zn1—O11—P1−117.4 (4)O23—P2—C1—C262.7 (5)
O1W—Zn1—O11—P162.6 (4)O22—P2—C1—C2−178.3 (4)
O23—P2—O21—Zn1−172.3 (3)O21—P2—C1—P155.2 (4)
O22—P2—O21—Zn162.8 (4)O23—P2—C1—P1−178.5 (3)
C1—P2—O21—Zn1−49.8 (4)O22—P2—C1—P1−59.5 (3)
O11i—Zn1—O21—P2−147.8 (4)C3—N1—C2—C1104.1 (7)
O11—Zn1—O21—P232.2 (4)C5—N1—C2—C1−72.1 (8)
O1Wi—Zn1—O21—P2126.0 (4)O1—C1—C2—N162.2 (6)
O1W—Zn1—O21—P2−54.0 (4)P1—C1—C2—N1177.1 (4)
O11—P1—C1—O1−176.6 (3)P2—C1—C2—N1−59.4 (6)
O13—P1—C1—O157.8 (4)C5—N1—C3—N20.4 (8)
O12—P1—C1—O1−59.9 (4)C2—N1—C3—N2−176.3 (6)
O11—P1—C1—C269.9 (4)C4—N2—C3—N10.3 (8)
O13—P1—C1—C2−55.8 (4)C3—N1—C5—C4−0.9 (8)
O12—P1—C1—C2−173.4 (4)C2—N1—C5—C4175.8 (6)
O11—P1—C1—P2−53.3 (4)C3—N2—C4—C5−0.9 (9)
O13—P1—C1—P2−178.9 (3)N1—C5—C4—N21.1 (8)
D—H···AD—HH···AD···AD—H···A
O22—H22···O23ii0.821.902.676 (6)159
O12—H12···O13iii0.821.792.607 (6)176
O1—H1···O23ii0.822.282.910 (6)134
O1W—H1WA···O120.822.433.078 (6)137
O1W—H1WB···O13iv0.821.942.745 (6)167
N2—H2···O21v0.861.902.740 (7)164
Zn1—O112.042 (4)
Zn1—O212.079 (4)
Zn1—O1W2.096 (4)
O11—Zn1—O2190.65 (16)
O11—Zn1—O1W86.18 (18)
O21—Zn1—O1W92.63 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O22—H22⋯O23i0.821.902.676 (6)159
O12—H12⋯O13ii0.821.792.607 (6)176
O1—H1⋯O23i0.822.282.910 (6)134
O1W—H1WA⋯O120.822.433.078 (6)137
O1W—H1WB⋯O13iii0.821.942.745 (6)167
N2—H2⋯O21iv0.861.902.740 (7)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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