| Literature DB >> 21578164 |
Eleonora Freire1, Daniel R Vega.
Abstract
In the title complex, [Zn(C(5)H(9)NO(7)P(2))(2)(H(2)O)(2)], the zinc atom is coordinated by two bidentate zoledronate [zoledronate = (2-(1-imidazole)-1-hydr-oxy-1,1'-ethyl-idenediphophonate)] ligands and two water mol-ecules. The coordination number is 6. There is one half-mol-ecule in the asymmetric unit with the zinc atom located on a crystallographic inversion centre. The anion exists as a zwitterion with an overall charge of -1; the protonated nitro-gen in the ring has a positive charge and the two phospho-nates groups each have a single negative charge. There are two intra-molecular O-H⋯O hydrogen bonds. The mol-ecules are linked into a chain by inter-molecular O-H⋯O hydrogen bonds. Adjacent chains are further linked by O-H⋯O hydrogen bonds involving the aqua ligands. An N-H⋯O inter-action is also observed.Entities:
Year: 2009 PMID: 21578164 PMCID: PMC2971396 DOI: 10.1107/S1600536809042858
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C5H9N2O7P2)2(H2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 42 reflections | |
| θ = 8–18° | |
| µ = 1.54 mm−1 | |
| α = 105.06 (3)° | |
| β = 112.23 (3)° | Prism, colorless |
| γ = 97.05 (3)° | 0.18 × 0.11 × 0.05 mm |
| Rigaku AFC6 Difractometer diffractometer | 1236 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.5°, θmin = 2.4° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 2426 measured reflections | 3 standard reflections every 150 reflections |
| 1990 independent reflections | intensity decay: <3% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1990 reflections | (Δ/σ)max < 0.001 |
| 160 parameters | Δρmax = 0.84 e Å−3 |
| 0 restraints | Δρmin = −0.94 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Zn1 | 0.5000 | 0.5000 | 0.5000 | 0.0266 (4) | |
| P1 | 0.8731 (2) | 0.77240 (19) | 0.52403 (17) | 0.0172 (4) | |
| P2 | 0.8422 (2) | 0.77671 (19) | 0.82873 (17) | 0.0186 (4) | |
| O11 | 0.7109 (6) | 0.6106 (5) | 0.4453 (4) | 0.0211 (9) | |
| O12 | 0.7749 (6) | 0.9268 (5) | 0.5228 (5) | 0.0242 (10) | |
| H12 | 0.8403 | 1.0149 | 0.5264 | 0.036* | |
| O13 | 1.0242 (6) | 0.7849 (5) | 0.4574 (5) | 0.0217 (9) | |
| O21 | 0.6875 (6) | 0.6116 (5) | 0.7361 (5) | 0.0253 (10) | |
| O22 | 0.7342 (6) | 0.9253 (5) | 0.8129 (5) | 0.0254 (10) | |
| H22 | 0.8021 | 1.0216 | 0.8691 | 0.038* | |
| O23 | 0.9654 (7) | 0.8002 (5) | 0.9969 (5) | 0.0249 (10) | |
| O1 | 1.1578 (6) | 0.9545 (5) | 0.8097 (5) | 0.0261 (10) | |
| H1 | 1.1019 | 1.0326 | 0.8140 | 0.039* | |
| N1 | 1.2533 (8) | 0.6520 (6) | 0.8864 (6) | 0.0224 (11) | |
| N2 | 1.3599 (9) | 0.5904 (8) | 1.0957 (7) | 0.0372 (15) | |
| H2 | 1.3678 | 0.5388 | 1.1618 | 0.045* | |
| C1 | 1.0088 (9) | 0.7937 (7) | 0.7310 (6) | 0.0183 (13) | |
| C2 | 1.1243 (10) | 0.6535 (8) | 0.7302 (7) | 0.0271 (15) | |
| H2A | 1.0288 | 0.5439 | 0.6719 | 0.032* | |
| H2B | 1.2067 | 0.6680 | 0.6759 | 0.032* | |
| C3 | 1.2149 (10) | 0.5438 (9) | 0.9533 (8) | 0.0315 (16) | |
| H3 | 1.1052 | 0.4509 | 0.9084 | 0.038* | |
| C5 | 1.4298 (10) | 0.7711 (8) | 0.9896 (8) | 0.0319 (16) | |
| H5 | 1.4929 | 0.8611 | 0.9722 | 0.038* | |
| C4 | 1.4926 (12) | 0.7303 (10) | 1.1212 (8) | 0.042 (2) | |
| H4 | 1.6068 | 0.7885 | 1.2127 | 0.051* | |
| O1W | 0.3851 (6) | 0.7142 (6) | 0.4904 (6) | 0.0349 (12) | |
| H1WA | 0.4645 | 0.8074 | 0.5273 | 0.052* | |
| H1WB | 0.2703 | 0.7245 | 0.4668 | 0.052* |
| Zn1 | 0.0278 (7) | 0.0212 (6) | 0.0247 (6) | 0.0057 (5) | 0.0079 (5) | 0.0030 (5) |
| P1 | 0.0177 (8) | 0.0145 (8) | 0.0173 (8) | 0.0054 (6) | 0.0056 (7) | 0.0043 (6) |
| P2 | 0.0194 (8) | 0.0157 (8) | 0.0150 (8) | 0.0029 (7) | 0.0048 (7) | 0.0008 (6) |
| O11 | 0.020 (2) | 0.024 (2) | 0.014 (2) | 0.0010 (19) | 0.0059 (18) | 0.0015 (17) |
| O12 | 0.026 (2) | 0.020 (2) | 0.035 (3) | 0.0118 (19) | 0.016 (2) | 0.015 (2) |
| O13 | 0.022 (2) | 0.019 (2) | 0.025 (2) | 0.0082 (18) | 0.0116 (19) | 0.0051 (18) |
| O21 | 0.029 (3) | 0.021 (2) | 0.017 (2) | 0.000 (2) | 0.006 (2) | 0.0027 (18) |
| O22 | 0.028 (2) | 0.020 (2) | 0.024 (2) | 0.0100 (19) | 0.009 (2) | 0.0019 (19) |
| O23 | 0.035 (3) | 0.021 (2) | 0.015 (2) | 0.005 (2) | 0.007 (2) | 0.0037 (18) |
| O1 | 0.021 (2) | 0.018 (2) | 0.030 (2) | 0.0008 (19) | 0.007 (2) | 0.0003 (19) |
| N1 | 0.023 (3) | 0.022 (3) | 0.021 (3) | 0.010 (2) | 0.006 (2) | 0.008 (2) |
| N2 | 0.052 (4) | 0.039 (4) | 0.032 (3) | 0.018 (3) | 0.020 (3) | 0.025 (3) |
| C1 | 0.023 (3) | 0.017 (3) | 0.017 (3) | 0.010 (3) | 0.007 (3) | 0.007 (2) |
| C2 | 0.029 (4) | 0.023 (3) | 0.019 (3) | 0.010 (3) | 0.002 (3) | 0.004 (3) |
| C3 | 0.027 (4) | 0.031 (4) | 0.044 (4) | 0.013 (3) | 0.016 (3) | 0.022 (3) |
| C5 | 0.027 (4) | 0.026 (4) | 0.037 (4) | 0.008 (3) | 0.007 (3) | 0.012 (3) |
| C4 | 0.048 (5) | 0.042 (5) | 0.025 (4) | 0.020 (4) | 0.000 (3) | 0.013 (3) |
| O1W | 0.018 (2) | 0.022 (2) | 0.059 (3) | 0.007 (2) | 0.013 (2) | 0.011 (2) |
| Zn1—O11i | 2.042 (4) | O1—H1 | 0.8201 |
| Zn1—O11 | 2.042 (4) | N1—C3 | 1.317 (8) |
| Zn1—O21 | 2.079 (4) | N1—C5 | 1.379 (8) |
| Zn1—O21i | 2.079 (4) | N1—C2 | 1.478 (7) |
| Zn1—O1Wi | 2.096 (4) | N2—C3 | 1.323 (9) |
| Zn1—O1W | 2.096 (4) | N2—C4 | 1.341 (9) |
| P1—O11 | 1.501 (4) | N2—H2 | 0.8600 |
| P1—O13 | 1.509 (4) | C1—C2 | 1.543 (8) |
| P1—O12 | 1.567 (4) | C2—H2A | 0.9700 |
| P1—C1 | 1.847 (6) | C2—H2B | 0.9700 |
| P2—O21 | 1.498 (4) | C3—H3 | 0.9300 |
| P2—O23 | 1.502 (4) | C5—C4 | 1.352 (9) |
| P2—O22 | 1.578 (4) | C5—H5 | 0.9300 |
| P2—C1 | 1.850 (6) | C4—H4 | 0.9300 |
| O12—H12 | 0.8200 | O1W—H1WA | 0.8200 |
| O22—H22 | 0.8200 | O1W—H1WB | 0.8200 |
| O1—C1 | 1.448 (7) | ||
| O11i—Zn1—O11 | 180.0 | C1—O1—H1 | 109.4 |
| O11i—Zn1—O21 | 89.35 (16) | C3—N1—C5 | 108.8 (6) |
| O11—Zn1—O21 | 90.65 (16) | C3—N1—C2 | 126.2 (6) |
| O11i—Zn1—O21i | 90.65 (16) | C5—N1—C2 | 125.0 (5) |
| O11—Zn1—O21i | 89.35 (16) | C3—N2—C4 | 109.7 (6) |
| O21—Zn1—O21i | 180.0 | C3—N2—H2 | 125.1 |
| O11i—Zn1—O1Wi | 86.18 (18) | C4—N2—H2 | 125.1 |
| O11—Zn1—O1Wi | 93.82 (18) | O1—C1—C2 | 106.5 (5) |
| O21—Zn1—O1Wi | 87.37 (18) | O1—C1—P1 | 108.5 (4) |
| O21i—Zn1—O1Wi | 92.63 (18) | C2—C1—P1 | 105.0 (4) |
| O11i—Zn1—O1W | 93.82 (18) | O1—C1—P2 | 110.8 (4) |
| O11—Zn1—O1W | 86.18 (18) | C2—C1—P2 | 112.6 (4) |
| O21—Zn1—O1W | 92.63 (18) | P1—C1—P2 | 113.1 (3) |
| O21i—Zn1—O1W | 87.37 (18) | N1—C2—C1 | 114.5 (5) |
| O1Wi—Zn1—O1W | 180.000 (1) | N1—C2—H2A | 108.6 |
| O11—P1—O13 | 115.5 (2) | C1—C2—H2A | 108.6 |
| O11—P1—O12 | 108.9 (2) | N1—C2—H2B | 108.6 |
| O13—P1—O12 | 109.9 (2) | C1—C2—H2B | 108.6 |
| O11—P1—C1 | 108.2 (3) | H2A—C2—H2B | 107.6 |
| O13—P1—C1 | 107.9 (3) | N1—C3—N2 | 108.0 (6) |
| O12—P1—C1 | 106.0 (3) | N1—C3—H3 | 126.0 |
| O21—P2—O23 | 115.7 (2) | N2—C3—H3 | 126.0 |
| O21—P2—O22 | 108.0 (3) | C4—C5—N1 | 106.1 (6) |
| O23—P2—O22 | 110.9 (2) | C4—C5—H5 | 127.0 |
| O21—P2—C1 | 107.4 (3) | N1—C5—H5 | 127.0 |
| O23—P2—C1 | 109.4 (3) | N2—C4—C5 | 107.4 (6) |
| O22—P2—C1 | 104.9 (3) | N2—C4—H4 | 126.3 |
| P1—O11—Zn1 | 134.2 (2) | C5—C4—H4 | 126.3 |
| P1—O12—H12 | 117.6 | Zn1—O1W—H1WA | 118.1 |
| P2—O21—Zn1 | 132.6 (3) | Zn1—O1W—H1WB | 130.4 |
| P2—O22—H22 | 116.2 | H1WA—O1W—H1WB | 110.8 |
| O13—P1—O11—Zn1 | 167.0 (3) | O12—P1—C1—P2 | 63.4 (3) |
| O12—P1—O11—Zn1 | −68.8 (4) | O21—P2—C1—O1 | 177.3 (4) |
| C1—P1—O11—Zn1 | 46.0 (4) | O23—P2—C1—O1 | −56.4 (4) |
| O21—Zn1—O11—P1 | −30.0 (4) | O22—P2—C1—O1 | 62.6 (4) |
| O21i—Zn1—O11—P1 | 150.0 (4) | O21—P2—C1—C2 | −63.6 (5) |
| O1Wi—Zn1—O11—P1 | −117.4 (4) | O23—P2—C1—C2 | 62.7 (5) |
| O1W—Zn1—O11—P1 | 62.6 (4) | O22—P2—C1—C2 | −178.3 (4) |
| O23—P2—O21—Zn1 | −172.3 (3) | O21—P2—C1—P1 | 55.2 (4) |
| O22—P2—O21—Zn1 | 62.8 (4) | O23—P2—C1—P1 | −178.5 (3) |
| C1—P2—O21—Zn1 | −49.8 (4) | O22—P2—C1—P1 | −59.5 (3) |
| O11i—Zn1—O21—P2 | −147.8 (4) | C3—N1—C2—C1 | 104.1 (7) |
| O11—Zn1—O21—P2 | 32.2 (4) | C5—N1—C2—C1 | −72.1 (8) |
| O1Wi—Zn1—O21—P2 | 126.0 (4) | O1—C1—C2—N1 | 62.2 (6) |
| O1W—Zn1—O21—P2 | −54.0 (4) | P1—C1—C2—N1 | 177.1 (4) |
| O11—P1—C1—O1 | −176.6 (3) | P2—C1—C2—N1 | −59.4 (6) |
| O13—P1—C1—O1 | 57.8 (4) | C5—N1—C3—N2 | 0.4 (8) |
| O12—P1—C1—O1 | −59.9 (4) | C2—N1—C3—N2 | −176.3 (6) |
| O11—P1—C1—C2 | 69.9 (4) | C4—N2—C3—N1 | 0.3 (8) |
| O13—P1—C1—C2 | −55.8 (4) | C3—N1—C5—C4 | −0.9 (8) |
| O12—P1—C1—C2 | −173.4 (4) | C2—N1—C5—C4 | 175.8 (6) |
| O11—P1—C1—P2 | −53.3 (4) | C3—N2—C4—C5 | −0.9 (9) |
| O13—P1—C1—P2 | −178.9 (3) | N1—C5—C4—N2 | 1.1 (8) |
| H··· | ||||
| O22—H22···O23ii | 0.82 | 1.90 | 2.676 (6) | 159 |
| O12—H12···O13iii | 0.82 | 1.79 | 2.607 (6) | 176 |
| O1—H1···O23ii | 0.82 | 2.28 | 2.910 (6) | 134 |
| O1W—H1WA···O12 | 0.82 | 2.43 | 3.078 (6) | 137 |
| O1W—H1WB···O13iv | 0.82 | 1.94 | 2.745 (6) | 167 |
| N2—H2···O21v | 0.86 | 1.90 | 2.740 (7) | 164 |
| Zn1—O11 | 2.042 (4) |
| Zn1—O21 | 2.079 (4) |
| Zn1—O1 | 2.096 (4) |
| O11—Zn1—O21 | 90.65 (16) |
| O11—Zn1—O1 | 86.18 (18) |
| O21—Zn1—O1 | 92.63 (18) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O22—H22⋯O23i | 0.82 | 1.90 | 2.676 (6) | 159 |
| O12—H12⋯O13ii | 0.82 | 1.79 | 2.607 (6) | 176 |
| O1—H1⋯O23i | 0.82 | 2.28 | 2.910 (6) | 134 |
| O1 | 0.82 | 2.43 | 3.078 (6) | 137 |
| O1 | 0.82 | 1.94 | 2.745 (6) | 167 |
| N2—H2⋯O21iv | 0.86 | 1.90 | 2.740 (7) | 164 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .