Literature DB >> 21578018

N-(2-Pyridylmeth-yl)phthalimide.

Olga Garduño-Beltrán1, Perla Román-Bravo, Felipe Medrano, Hugo Tlahuext.   

Abstract

In the title compound, C(14)H(10)N(2)O(2), the phtalimide and 2-pyridylmethyl units are almost perpendicular, with an inter-planar angle of 85.74 (2)°. In the crystal, mol-ecules are linked by weak C-H⋯O inter-actions, forming chains running along the b axis. The packing is further stabilized by offset π-π inter-actions between adjacent pyridine rings, with a centroid-centroid distance of 3.855 (2) Å.

Entities:  

Year:  2009        PMID: 21578018      PMCID: PMC2970203          DOI: 10.1107/S160053680903846X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general backround to phthalimides, see: Ing & Manske (1926 ▶); Gibson & Bradshaw (1968 ▶); Ishii & Sakaguchi (2004 ▶). For their applications in photochemical synthesis and catalytic and chiral reactions, see: Yoon & Mariano (2001 ▶); Huang et al. (2006 ▶); Rodríguez et al. 2006 ▶. For their biological activity, see: Miyachi et al. (1997 ▶); Vázquez et al. (2005 ▶). For phthalimide derivatives, see: Vamecq et al. (2000 ▶). For analysis of hydrogen-bonding patterns, see: Hunter (1994 ▶); Desiraju (1991 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H10N2O2 M = 238.24 Monoclinic, a = 11.7734 (18) Å b = 14.239 (2) Å c = 7.0698 (11) Å β = 106.373 (3)° V = 1137.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.45 × 0.28 × 0.19 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.958, T max = 0.982 7150 measured reflections 1994 independent reflections 1567 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.155 S = 1.20 1994 reflections 163 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT-Plus-NT (Bruker, 2001 ▶); data reduction: SAINT-Plus-NT; program(s) used to solve structure: SHELXTL-NT (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL-NT; molecular graphics: SHELXTL-NT; software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680903846X/fl2266sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903846X/fl2266Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H10N2O2F(000) = 496
Mr = 238.24Dx = 1.392 Mg m3
Monoclinic, P21/cMelting point: 399 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 11.7734 (18) ÅCell parameters from 2665 reflections
b = 14.239 (2) Åθ = 2.3–26.8°
c = 7.0698 (11) ŵ = 0.10 mm1
β = 106.373 (3)°T = 293 K
V = 1137.1 (3) Å3Prism, colourless
Z = 40.45 × 0.28 × 0.19 mm
Bruker SMART APEX CCD area-detector diffractometer1994 independent reflections
Radiation source: fine-focus sealed tube1567 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 8.3 pixels mm-1θmax = 25.0°, θmin = 1.8°
φ and ω scansh = −13→13
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −16→16
Tmin = 0.958, Tmax = 0.982l = −8→8
7150 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.155H-atom parameters constrained
S = 1.20w = 1/[σ2(Fo2) + (0.0705P)2 + 0.1417P] where P = (Fo2 + 2Fc2)/3
1994 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8978 (2)0.03798 (15)0.1337 (3)0.0493 (6)
C21.01324 (19)0.07017 (14)0.2618 (3)0.0456 (5)
C31.1103 (2)0.01983 (16)0.3657 (3)0.0533 (6)
H31.1100−0.04550.36650.064*
C41.2086 (2)0.07039 (18)0.4690 (3)0.0613 (7)
H41.27600.03840.53990.074*
C51.2088 (2)0.16764 (17)0.4691 (3)0.0612 (6)
H51.27610.19970.54050.073*
C61.1106 (2)0.21791 (16)0.3648 (3)0.0557 (6)
H61.11050.28320.36460.067*
C71.01340 (18)0.16754 (14)0.2616 (3)0.0466 (5)
C80.8971 (2)0.19976 (15)0.1347 (3)0.0515 (6)
C90.7148 (2)0.11883 (15)−0.0729 (3)0.0576 (6)
H9A0.70480.0621−0.15170.069*
H9B0.70750.1718−0.16170.069*
C100.61635 (19)0.12393 (13)0.0243 (3)0.0484 (6)
C110.6362 (2)0.13358 (14)0.2231 (3)0.0573 (6)
H110.71280.13800.30660.069*
C120.5388 (3)0.13668 (17)0.2973 (4)0.0705 (7)
H120.54890.14370.43190.085*
C130.4280 (2)0.12929 (16)0.1695 (5)0.0708 (7)
H130.36140.13030.21560.085*
C140.4168 (2)0.12042 (16)−0.0258 (4)0.0672 (7)
H140.34100.1159−0.11180.081*
N10.83334 (16)0.11904 (11)0.0626 (3)0.0530 (5)
N20.50806 (18)0.11779 (12)−0.1016 (3)0.0610 (6)
O10.86171 (15)−0.04110 (11)0.0924 (2)0.0652 (5)
O20.85977 (15)0.27886 (11)0.0976 (2)0.0681 (5)
U11U22U33U12U13U23
C10.0604 (15)0.0411 (13)0.0521 (13)−0.0013 (10)0.0249 (11)0.0003 (10)
C20.0532 (13)0.0419 (12)0.0483 (12)0.0033 (10)0.0251 (10)0.0040 (9)
C30.0655 (16)0.0427 (12)0.0571 (13)0.0090 (11)0.0260 (12)0.0072 (10)
C40.0564 (15)0.0678 (17)0.0592 (14)0.0082 (12)0.0154 (12)0.0116 (12)
C50.0554 (15)0.0658 (17)0.0603 (14)−0.0079 (12)0.0126 (12)0.0027 (12)
C60.0610 (15)0.0447 (13)0.0630 (14)−0.0036 (11)0.0201 (12)0.0014 (11)
C70.0528 (13)0.0407 (12)0.0507 (12)0.0014 (9)0.0217 (10)0.0034 (9)
C80.0566 (14)0.0404 (13)0.0608 (14)0.0018 (10)0.0218 (11)0.0040 (10)
C90.0572 (14)0.0559 (15)0.0555 (13)−0.0027 (11)0.0088 (11)0.0002 (10)
C100.0528 (13)0.0335 (12)0.0540 (12)0.0012 (9)0.0069 (10)0.0016 (9)
C110.0575 (14)0.0506 (14)0.0571 (13)−0.0010 (11)0.0052 (11)−0.0051 (10)
C120.088 (2)0.0634 (17)0.0610 (15)0.0016 (14)0.0220 (15)−0.0102 (12)
C130.0612 (16)0.0625 (17)0.091 (2)0.0054 (12)0.0250 (15)−0.0024 (14)
C140.0513 (15)0.0626 (17)0.0794 (18)−0.0002 (11)0.0050 (13)0.0013 (13)
N10.0516 (11)0.0409 (11)0.0647 (12)−0.0015 (8)0.0135 (9)0.0013 (8)
N20.0555 (12)0.0563 (13)0.0627 (12)−0.0001 (9)0.0029 (10)0.0025 (9)
O10.0795 (12)0.0428 (10)0.0732 (11)−0.0070 (8)0.0214 (9)−0.0059 (8)
O20.0689 (11)0.0409 (10)0.0873 (12)0.0063 (8)0.0100 (9)0.0071 (8)
C1—O11.210 (3)C8—N11.389 (3)
C1—N11.395 (3)C9—N11.453 (3)
C1—C21.477 (3)C9—C101.506 (3)
C2—C31.374 (3)C9—H9A0.9700
C2—C71.386 (3)C9—H9B0.9700
C3—C41.383 (3)C10—N21.336 (3)
C3—H30.9300C10—C111.366 (3)
C4—C51.385 (4)C11—C121.391 (3)
C4—H40.9300C11—H110.9300
C5—C61.382 (3)C12—C131.365 (4)
C5—H50.9300C12—H120.9300
C6—C71.373 (3)C13—C141.356 (4)
C6—H60.9300C13—H130.9300
C7—C81.483 (3)C14—N21.329 (3)
C8—O21.210 (2)C14—H140.9300
O1—C1—N1124.4 (2)N1—C9—H9A108.6
O1—C1—C2129.5 (2)C10—C9—H9A108.6
N1—C1—C2106.10 (18)N1—C9—H9B108.6
C3—C2—C7121.4 (2)C10—C9—H9B108.6
C3—C2—C1130.5 (2)H9A—C9—H9B107.5
C7—C2—C1108.13 (18)N2—C10—C11123.1 (2)
C2—C3—C4117.2 (2)N2—C10—C9113.95 (19)
C2—C3—H3121.4C11—C10—C9122.9 (2)
C4—C3—H3121.4C10—C11—C12118.1 (2)
C3—C4—C5121.5 (2)C10—C11—H11120.9
C3—C4—H4119.3C12—C11—H11120.9
C5—C4—H4119.3C13—C12—C11118.9 (3)
C6—C5—C4121.1 (2)C13—C12—H12120.5
C6—C5—H5119.4C11—C12—H12120.5
C4—C5—H5119.4C14—C13—C12118.8 (2)
C7—C6—C5117.3 (2)C14—C13—H13120.6
C7—C6—H6121.3C12—C13—H13120.6
C5—C6—H6121.3N2—C14—C13123.8 (2)
C6—C7—C2121.5 (2)N2—C14—H14118.1
C6—C7—C8130.5 (2)C13—C14—H14118.1
C2—C7—C8107.97 (19)C8—N1—C1111.69 (19)
O2—C8—N1124.4 (2)C8—N1—C9124.25 (18)
O2—C8—C7129.5 (2)C1—N1—C9124.06 (18)
N1—C8—C7106.11 (18)C14—N2—C10117.2 (2)
N1—C9—C10114.79 (19)
O1—C1—C2—C30.9 (4)N1—C9—C10—C113.7 (3)
N1—C1—C2—C3−178.73 (19)N2—C10—C11—C120.3 (3)
O1—C1—C2—C7179.4 (2)C9—C10—C11—C12−179.42 (19)
N1—C1—C2—C7−0.2 (2)C10—C11—C12—C130.5 (3)
C7—C2—C3—C4−0.5 (3)C11—C12—C13—C14−0.9 (4)
C1—C2—C3—C4177.91 (19)C12—C13—C14—N20.5 (4)
C2—C3—C4—C50.5 (3)O2—C8—N1—C1−178.6 (2)
C3—C4—C5—C6−0.3 (3)C7—C8—N1—C10.7 (2)
C4—C5—C6—C70.0 (3)O2—C8—N1—C92.3 (3)
C5—C6—C7—C20.1 (3)C7—C8—N1—C9−178.38 (18)
C5—C6—C7—C8−178.8 (2)O1—C1—N1—C8−180.0 (2)
C3—C2—C7—C60.2 (3)C2—C1—N1—C8−0.3 (2)
C1—C2—C7—C6−178.53 (18)O1—C1—N1—C9−0.9 (3)
C3—C2—C7—C8179.31 (18)C2—C1—N1—C9178.74 (18)
C1—C2—C7—C80.6 (2)C10—C9—N1—C8−87.1 (2)
C6—C7—C8—O2−2.5 (4)C10—C9—N1—C193.9 (2)
C2—C7—C8—O2178.4 (2)C13—C14—N2—C100.3 (3)
C6—C7—C8—N1178.2 (2)C11—C10—N2—C14−0.7 (3)
C2—C7—C8—N1−0.8 (2)C9—C10—N2—C14179.06 (18)
N1—C9—C10—N2−176.06 (17)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.932.533.452 (3)171
C6—H6···O1ii0.932.533.452 (3)171
C14—H14···O1iii0.932.653.373 (3)135
C11—H11···O2iv0.932.573.401 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.932.533.452 (3)171
C6—H6⋯O1ii0.932.533.452 (3)171
C14—H14⋯O1iii0.932.653.373 (3)135
C11—H11⋯O2iv0.932.573.401 (3)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  Synthesis and anticonvulsant and neurotoxic properties of substituted N-phenyl derivatives of the phthalimide pharmacophore.

Authors:  J Vamecq; P Bac; C Herrenknecht; P Maurois; P Delcourt; J P Stables
Journal:  J Med Chem       Date:  2000-04-06       Impact factor: 7.446

2.  Solvent-free asymmetric organocatalysis in a ball mill.

Authors:  Belén Rodríguez; Toni Rantanen; Carsten Bolm
Journal:  Angew Chem Int Ed Engl       Date:  2006-10-20       Impact factor: 15.336

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Rhodium-catalyzed enantioselective hydrogenation of beta-phthalimide acrylates to synthesis of beta2-amino acids.

Authors:  Hanmin Huang; Xiongcai Liu; Jun Deng; Min Qiu; Zhuo Zheng
Journal:  Org Lett       Date:  2006-07-20       Impact factor: 6.005

5.  Photophysics and biological applications of the environment-sensitive fluorophore 6-N,N-dimethylamino-2,3-naphthalimide.

Authors:  M Eugenio Vázquez; Juan B Blanco; B Imperiali
Journal:  J Am Chem Soc       Date:  2005-02-02       Impact factor: 15.419

6.  The synthetic potential of phthalimide SET photochemistry.

Authors:  U C Yoon; P S Mariano
Journal:  Acc Chem Res       Date:  2001-07       Impact factor: 22.384

Review 7.  [Novel biological response modifiers: phthalimides with TNF-alpha production regulating activity].

Authors:  H Miyachi; A Azuma; Y Hashimoto
Journal:  Yakugaku Zasshi       Date:  1997-02       Impact factor: 0.302

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  6-Benzyl-6,7-dihydro-5H-pyrrolo-[3,4-b]pyridine-5,7-dione.

Authors:  Hong-Shun Sun; Long Jiang; Hong Xu; Xin-Hua Lu; Yu-Long Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.