Literature DB >> 21578008

Cyclo-hexane-1,2-diammonium bis-(pyridine-2-carboxyl-ate).

Nam-Ho Kim, In-Chul Hwang, Kwang Ha.   

Abstract

In the dication of the title salt, C(6)H(16)N(2) (2+)·2C(6)H(4)NO(2) (-), the two ammonium groups are in the equatorial positions of the chair-shaped cyclo-hexyl ring. In the crystal, the cations and anions are linked by N-H⋯O and N-H⋯N hydrogen bonds, forming a layer network parallel to the ac plane. Weak π-π inter-actions between adjacent pyridine rings with a centroid-centroid distance of 3.589 (2) Å are also present.

Entities:  

Year:  2009        PMID: 21578008      PMCID: PMC2970198          DOI: 10.1107/S1600536809038689

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses and structures of cyclo­hexane-1,2-diammonium compounds, see: Lin & Lii (1998 ▶); Lin & Wang (2000 ▶). For the crystal structures of pyridine-2-carboxyl­ates, see: Kim & Ha (2009a ▶,b ▶,c ▶).

Experimental

Crystal data

C6H16N2 2+·2C6H4NO2 − M = 360.41 Monoclinic, a = 9.2942 (11) Å b = 20.329 (2) Å c = 10.2189 (11) Å β = 101.775 (3)° V = 1890.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.20 × 0.10 × 0.10 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: none 11005 measured reflections 3854 independent reflections 1741 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.171 S = 0.98 3854 reflections 237 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809038689/ng2649sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809038689/ng2649Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H16N22+·2C6H4NO2F(000) = 768
Mr = 360.41Dx = 1.267 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 784 reflections
a = 9.2942 (11) Åθ = 2.3–17.2°
b = 20.329 (2) ŵ = 0.09 mm1
c = 10.2189 (11) ÅT = 293 K
β = 101.775 (3)°Rod, colorless
V = 1890.1 (4) Å30.20 × 0.10 × 0.10 mm
Z = 4
Bruker SMART 1000 CCD diffractometer1741 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.064
graphiteθmax = 26.4°, θmin = 2.3°
φ and ω scansh = −11→11
11005 measured reflectionsk = −25→25
3854 independent reflectionsl = −12→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0581P)2] where P = (Fo2 + 2Fc2)/3
3854 reflections(Δ/σ)max < 0.001
237 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5813 (2)0.56693 (10)0.5900 (2)0.0580 (6)
O20.6448 (3)0.60901 (12)0.7932 (2)0.0874 (9)
O30.9341 (2)0.53730 (12)1.1294 (2)0.0629 (7)
O40.7329 (2)0.53120 (12)1.2114 (2)0.0705 (7)
N10.7776 (2)0.49308 (12)0.8877 (2)0.0497 (7)
H1A0.82520.50930.96170.060*
H1B0.72470.52330.84250.060*
H1C0.83870.47800.84230.060*
N20.5142 (2)0.44461 (12)0.6901 (2)0.0515 (7)
H2A0.48870.42320.61640.062*
H2B0.56330.47900.67680.062*
H2C0.43700.45630.71820.062*
N30.4687 (3)0.68504 (14)0.4928 (3)0.0660 (8)
N41.1006 (3)0.56390 (14)1.3686 (3)0.0606 (8)
C10.6809 (3)0.43883 (15)0.9164 (3)0.0469 (8)
H10.60480.45730.95930.056*
C20.6076 (3)0.40179 (15)0.7922 (3)0.0494 (8)
H20.68440.38200.75190.059*
C30.5124 (4)0.34650 (16)0.8301 (3)0.0646 (10)
H3A0.43530.36520.86980.078*
H3B0.46640.32270.75030.078*
C40.6042 (4)0.29907 (18)0.9290 (4)0.0789 (11)
H4A0.54080.26570.95500.095*
H4B0.67540.27720.88650.095*
C50.6839 (5)0.33547 (18)1.0523 (3)0.0802 (12)
H5A0.61280.35291.10070.096*
H5B0.74740.30521.11080.096*
C60.7750 (4)0.39129 (16)1.0134 (3)0.0625 (10)
H6A0.85160.37330.97220.075*
H6B0.82190.41501.09310.075*
C70.4020 (5)0.74176 (19)0.4510 (4)0.0801 (12)
H70.36410.74650.36000.096*
C80.3859 (5)0.79253 (18)0.5318 (4)0.0832 (12)
H80.33720.83070.49770.100*
C90.4430 (5)0.78617 (18)0.6647 (4)0.0863 (13)
H90.43440.82030.72310.104*
C100.5136 (4)0.72897 (17)0.7119 (3)0.0668 (10)
H100.55460.72410.80240.080*
C110.5224 (3)0.67897 (15)0.6232 (3)0.0493 (8)
C120.5894 (3)0.61329 (16)0.6723 (4)0.0542 (9)
C131.1815 (4)0.58402 (19)1.4852 (4)0.0769 (11)
H131.28330.58321.49580.092*
C141.1234 (4)0.60559 (18)1.5892 (4)0.0715 (11)
H141.18460.61961.66780.086*
C150.9757 (5)0.60653 (18)1.5775 (4)0.0723 (11)
H150.93380.62121.64740.087*
C160.8879 (4)0.58488 (17)1.4573 (3)0.0646 (10)
H160.78610.58431.44630.078*
C170.9540 (3)0.56461 (14)1.3564 (3)0.0452 (8)
C180.8658 (4)0.54258 (15)1.2225 (3)0.0496 (8)
U11U22U33U12U13U23
O10.0663 (15)0.0528 (14)0.0526 (14)0.0046 (11)0.0071 (11)−0.0075 (11)
O20.126 (2)0.0742 (18)0.0482 (16)0.0264 (16)−0.0142 (15)−0.0071 (12)
O30.0525 (14)0.0915 (18)0.0459 (14)−0.0065 (12)0.0128 (11)−0.0127 (12)
O40.0427 (14)0.102 (2)0.0660 (17)−0.0010 (13)0.0095 (12)−0.0170 (13)
N10.0466 (16)0.0592 (17)0.0403 (15)0.0014 (13)0.0018 (12)−0.0019 (12)
N20.0448 (15)0.0642 (18)0.0444 (16)−0.0042 (13)0.0061 (12)−0.0097 (13)
N30.077 (2)0.062 (2)0.053 (2)0.0113 (16)−0.0005 (15)−0.0010 (14)
N40.0504 (18)0.078 (2)0.0512 (18)−0.0100 (15)0.0052 (14)−0.0030 (14)
C10.0436 (18)0.055 (2)0.0424 (19)−0.0030 (16)0.0109 (15)0.0000 (15)
C20.0467 (18)0.057 (2)0.0450 (19)0.0038 (16)0.0096 (15)−0.0014 (15)
C30.069 (2)0.065 (2)0.062 (2)−0.014 (2)0.0177 (19)−0.0052 (18)
C40.105 (3)0.061 (2)0.072 (3)−0.006 (2)0.021 (2)0.007 (2)
C50.111 (3)0.069 (3)0.061 (3)0.002 (2)0.018 (2)0.013 (2)
C60.073 (2)0.062 (2)0.050 (2)0.0062 (19)0.0045 (17)0.0067 (17)
C70.104 (3)0.070 (3)0.058 (3)0.012 (2)−0.002 (2)0.001 (2)
C80.107 (3)0.056 (3)0.083 (3)0.012 (2)0.011 (3)0.004 (2)
C90.132 (4)0.048 (2)0.081 (3)0.005 (2)0.025 (3)−0.016 (2)
C100.086 (3)0.054 (2)0.058 (2)−0.002 (2)0.0076 (19)−0.0057 (18)
C110.0482 (19)0.050 (2)0.050 (2)−0.0064 (16)0.0087 (16)−0.0029 (16)
C120.052 (2)0.057 (2)0.052 (2)−0.0021 (17)0.0063 (17)−0.0047 (18)
C130.059 (2)0.106 (3)0.062 (3)−0.019 (2)0.004 (2)−0.004 (2)
C140.079 (3)0.088 (3)0.045 (2)−0.022 (2)0.006 (2)−0.0053 (19)
C150.083 (3)0.083 (3)0.056 (3)0.001 (2)0.028 (2)−0.0101 (19)
C160.054 (2)0.087 (3)0.056 (2)−0.0048 (19)0.0173 (19)−0.0143 (19)
C170.046 (2)0.0454 (19)0.043 (2)−0.0001 (15)0.0074 (15)0.0047 (14)
C180.044 (2)0.053 (2)0.051 (2)0.0054 (16)0.0081 (17)−0.0018 (16)
O1—C121.255 (3)C4—H4A0.9700
O2—C121.241 (3)C4—H4B0.9700
O3—C181.251 (3)C5—C61.517 (5)
O4—C181.239 (3)C5—H5A0.9700
N1—C11.489 (3)C5—H5B0.9700
N1—H1A0.8600C6—H6A0.9700
N1—H1B0.8600C6—H6B0.9700
N1—H1C0.8600C7—C81.349 (5)
N2—C21.493 (3)C7—H70.9300
N2—H2A0.8600C8—C91.359 (5)
N2—H2B0.8600C8—H80.9300
N2—H2C0.8600C9—C101.374 (5)
N3—C111.330 (4)C9—H90.9300
N3—C71.337 (4)C10—C111.376 (4)
N4—C131.337 (4)C10—H100.9300
N4—C171.343 (4)C11—C121.515 (4)
C1—C21.513 (4)C13—C141.359 (5)
C1—C61.526 (4)C13—H130.9300
C1—H10.9800C14—C151.353 (5)
C2—C31.528 (4)C14—H140.9300
C2—H20.9800C15—C161.400 (4)
C3—C41.525 (4)C15—H150.9300
C3—H3A0.9700C16—C171.368 (4)
C3—H3B0.9700C16—H160.9300
C4—C51.517 (5)C17—C181.512 (4)
C1—N1—H1A109.5H5A—C5—H5B108.1
C1—N1—H1B109.5C5—C6—C1111.6 (3)
H1A—N1—H1B109.5C5—C6—H6A109.3
C1—N1—H1C109.5C1—C6—H6A109.3
H1A—N1—H1C109.5C5—C6—H6B109.3
H1B—N1—H1C109.5C1—C6—H6B109.3
C2—N2—H2A109.5H6A—C6—H6B108.0
C2—N2—H2B109.5N3—C7—C8124.5 (4)
H2A—N2—H2B109.5N3—C7—H7117.8
C2—N2—H2C109.5C8—C7—H7117.8
H2A—N2—H2C109.5C7—C8—C9118.0 (4)
H2B—N2—H2C109.5C7—C8—H8121.0
C11—N3—C7117.1 (3)C9—C8—H8121.0
C13—N4—C17117.1 (3)C8—C9—C10119.5 (3)
N1—C1—C2112.9 (2)C8—C9—H9120.2
N1—C1—C6108.0 (2)C10—C9—H9120.2
C2—C1—C6109.3 (3)C9—C10—C11118.8 (3)
N1—C1—H1108.9C9—C10—H10120.6
C2—C1—H1108.9C11—C10—H10120.6
C6—C1—H1108.9N3—C11—C10122.1 (3)
N2—C2—C1113.2 (2)N3—C11—C12117.3 (3)
N2—C2—C3108.8 (2)C10—C11—C12120.6 (3)
C1—C2—C3109.8 (2)O2—C12—O1124.8 (3)
N2—C2—H2108.3O2—C12—C11116.8 (3)
C1—C2—H2108.3O1—C12—C11118.4 (3)
C3—C2—H2108.3N4—C13—C14123.7 (4)
C4—C3—C2111.0 (3)N4—C13—H13118.2
C4—C3—H3A109.4C14—C13—H13118.2
C2—C3—H3A109.4C15—C14—C13119.6 (3)
C4—C3—H3B109.4C15—C14—H14120.2
C2—C3—H3B109.4C13—C14—H14120.2
H3A—C3—H3B108.0C14—C15—C16118.2 (3)
C5—C4—C3110.7 (3)C14—C15—H15120.9
C5—C4—H4A109.5C16—C15—H15120.9
C3—C4—H4A109.5C17—C16—C15119.0 (3)
C5—C4—H4B109.5C17—C16—H16120.5
C3—C4—H4B109.5C15—C16—H16120.5
H4A—C4—H4B108.1N4—C17—C16122.4 (3)
C6—C5—C4110.6 (3)N4—C17—C18115.7 (3)
C6—C5—H5A109.5C16—C17—C18121.9 (3)
C4—C5—H5A109.5O4—C18—O3124.4 (3)
C6—C5—H5B109.5O4—C18—C17119.0 (3)
C4—C5—H5B109.5O3—C18—C17116.6 (3)
N1—C1—C2—N2−59.0 (3)C9—C10—C11—C12−175.5 (3)
C6—C1—C2—N2−179.2 (2)N3—C11—C12—O2177.0 (3)
N1—C1—C2—C3179.2 (2)C10—C11—C12—O2−5.3 (5)
C6—C1—C2—C359.0 (3)N3—C11—C12—O1−5.1 (4)
N2—C2—C3—C4177.0 (3)C10—C11—C12—O1172.6 (3)
C1—C2—C3—C4−58.6 (4)C17—N4—C13—C14−0.9 (5)
C2—C3—C4—C556.3 (4)N4—C13—C14—C150.9 (6)
C3—C4—C5—C6−54.9 (4)C13—C14—C15—C160.1 (6)
C4—C5—C6—C156.8 (4)C14—C15—C16—C17−0.9 (5)
N1—C1—C6—C5177.9 (3)C13—N4—C17—C160.1 (5)
C2—C1—C6—C5−58.9 (4)C13—N4—C17—C18179.1 (3)
C11—N3—C7—C8−0.1 (6)C15—C16—C17—N40.8 (5)
N3—C7—C8—C91.0 (7)C15—C16—C17—C18−178.1 (3)
C7—C8—C9—C10−0.4 (6)N4—C17—C18—O4167.7 (3)
C8—C9—C10—C11−1.0 (6)C16—C17—C18—O4−13.2 (5)
C7—N3—C11—C10−1.5 (5)N4—C17—C18—O3−12.5 (4)
C7—N3—C11—C12176.2 (3)C16—C17—C18—O3166.5 (3)
C9—C10—C11—N32.0 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.861.892.749 (3)175
N1—H1B···O20.861.922.743 (3)160
N1—H1C···O3i0.862.102.790 (3)137
N1—H1C···N4i0.862.493.271 (4)152
N2—H2A···O1ii0.862.092.828 (3)144
N2—H2A···N3ii0.862.533.254 (4)142
N2—H2B···O10.862.022.807 (3)152
N2—H2C···O4iii0.861.882.734 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.861.892.749 (3)175
N1—H1B⋯O20.861.922.743 (3)160
N1—H1C⋯O3i0.862.102.790 (3)137
N1—H1C⋯N4i0.862.493.271 (4)152
N2—H2A⋯O1ii0.862.092.828 (3)144
N2—H2A⋯N3ii0.862.533.254 (4)142
N2—H2B⋯O10.862.022.807 (3)152
N2—H2C⋯O4iii0.861.882.734 (3)171

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and Structure of [(1R,2R)-C(6)H(10)(NH(3))(2)][Ga(OH)(HPO(4))(2)].H(2)O, the First Metal Phosphate Containing a Chiral Amine.

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Authors:  Nam-Ho Kim; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15

4.  Hexane-1,6-diammonium bis-(pyridine-2-carboxyl-ate).

Authors:  Nam-Ho Kim; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

5.  4,11-Diaza-1,8-diazo-niacyclo-tetra-decane bis-(pyridine-2-carboxyl-ate) dihydrate.

Authors:  Nam-Ho Kim; Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-19

6.  Structure validation in chemical crystallography.

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