Literature DB >> 21577560

Butane-1,4-diammonium bis-(pyridine-2-carboxyl-ate) monohydrate.

Nam-Ho Kim1, Kwang Ha.   

Abstract

The asymmetric unit of the title compound, C(4)H(14)N(2) (2+)·2C(6)H(4)n class="Chemical">NO(2) (-)·H(2)O, consists of half of a doubly protonated tetra-methyl-enediammonium dication, a pyridine-2-carboxyl-ate anion and half of a solvent water mol-ecule; the dication is located on a centre of inversion and a twofold rotation axis passes through the O atom of the water mol-ecule. The carboxyl-ate group of the anion appears to be delocalized on the basis of the C-O bond lengths. In the crystal structure, the components are linked by inter-molecular N-H⋯O, N-H⋯N and O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577560      PMCID: PMC2970077          DOI: 10.1107/S1600536809031493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of some butane-1,4-diammonium compounds, see: n class="Chemical">Natarajan & Cheetham (1997 ▶); Zheng et al. (1999 ▶); Sediri et al. (2002 ▶); Srinivasan et al. (2005 ▶); Lemmerer & Billing (2006 ▶); van Blerk & Kruger (2007 ▶, 2008 ▶); Jayasundera et al. (2008 ▶). For the structure of pyridine-2-carboxylic acid, see: Hamazaki et al. (1998 ▶). For a related hexane-1,6-diammonium compound, see: Kim & Ha (2009 ▶).

Experimental

Crystal data

C4H14N2 2+·2n class="CellLine">C6H4NO2 −·H2O M = 352.39 Monoclinic, a = 20.655 (3) Å b = 7.6170 (11) Å c = 12.910 (2) Å β = 113.789 (4)° V = 1858.5 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.27 × 0.21 × 0.16 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (; Bruker, 2000 ▶) T min = 0.740, T max = 0.985 6674 measured reflections 2298 independent reflections 1040 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.152 S = 0.99 2298 reflections 162 parameters All H-atom parameters refined Δρmax = 0.18 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031493/is2449sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031493/is2449Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H14N22+·2C6H4NO2·H2OF(000) = 752
Mr = 352.39Dx = 1.259 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1114 reflections
a = 20.655 (3) Åθ = 2.9–22.5°
b = 7.6170 (11) ŵ = 0.10 mm1
c = 12.910 (2) ÅT = 296 K
β = 113.789 (4)°Block, colorless
V = 1858.5 (5) Å30.27 × 0.21 × 0.16 mm
Z = 4
Bruker SMART 1000 CCD diffractometer2298 independent reflections
Radiation source: fine-focus sealed tube1040 reflections with I > 2σ(I)
graphiteRint = 0.048
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −27→27
Tmin = 0.740, Tmax = 0.985k = −10→9
6674 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152All H-atom parameters refined
S = 0.99w = 1/[σ2(Fo2) + (0.0576P)2] where P = (Fo2 + 2Fc2)/3
2298 reflections(Δ/σ)max < 0.001
162 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.42900 (8)0.4778 (2)0.55250 (14)0.0629 (6)
O20.36511 (9)0.6362 (3)0.61996 (15)0.0793 (7)
N10.31266 (9)0.3696 (3)0.37672 (16)0.0541 (6)
C10.25453 (15)0.3005 (4)0.2959 (2)0.0663 (8)
H10.2608 (13)0.230 (4)0.235 (2)0.089 (9)*
C20.18842 (15)0.3185 (4)0.2948 (3)0.0685 (8)
H20.1484 (13)0.262 (3)0.233 (2)0.073 (8)*
C30.18017 (14)0.4148 (4)0.3778 (3)0.0646 (8)
H30.1342 (14)0.439 (3)0.380 (2)0.085 (9)*
C40.23908 (13)0.4901 (4)0.4606 (2)0.0547 (7)
H40.2350 (11)0.556 (3)0.517 (2)0.055 (7)*
C50.30461 (11)0.4623 (3)0.45825 (18)0.0429 (6)
C60.37158 (13)0.5323 (3)0.5513 (2)0.0483 (6)
N20.05485 (12)0.8325 (3)0.15154 (19)0.0463 (5)
H2A0.0797 (12)0.853 (3)0.234 (2)0.072 (8)*
H2B0.0116 (14)0.898 (3)0.121 (2)0.070 (8)*
H2C0.0864 (14)0.863 (4)0.117 (2)0.091 (10)*
C70.00642 (18)0.5974 (3)0.0102 (2)0.0599 (8)
H7A−0.0362 (16)0.665 (4)−0.025 (3)0.106 (11)*
H7B0.0374 (16)0.642 (4)−0.025 (3)0.116 (12)*
C80.04043 (18)0.6425 (4)0.1318 (2)0.0612 (8)
H8A0.0144 (16)0.604 (4)0.173 (3)0.113 (13)*
H8B0.0889 (17)0.577 (4)0.175 (3)0.127 (13)*
O30.00000.2467 (4)0.25000.0872 (10)
H3O0.018 (2)0.173 (5)0.311 (3)0.176 (18)*
U11U22U33U12U13U23
O10.0443 (9)0.0705 (12)0.0630 (12)−0.0030 (9)0.0102 (8)−0.0125 (9)
O20.0782 (13)0.0863 (15)0.0542 (12)0.0161 (11)0.0066 (10)−0.0263 (11)
N10.0472 (12)0.0625 (14)0.0459 (12)−0.0017 (10)0.0117 (10)−0.0095 (10)
C10.0599 (18)0.0692 (19)0.0532 (17)−0.0025 (15)0.0056 (14)−0.0149 (14)
C20.0483 (17)0.0638 (19)0.068 (2)−0.0074 (14)−0.0032 (14)0.0020 (15)
C30.0429 (16)0.073 (2)0.071 (2)0.0037 (14)0.0156 (15)0.0136 (16)
C40.0538 (16)0.0597 (18)0.0500 (16)0.0119 (13)0.0202 (13)0.0062 (13)
C50.0462 (13)0.0407 (13)0.0368 (13)0.0041 (11)0.0116 (10)0.0035 (10)
C60.0527 (14)0.0423 (14)0.0412 (14)0.0048 (12)0.0097 (12)0.0015 (11)
N20.0456 (12)0.0466 (13)0.0425 (13)0.0015 (10)0.0134 (11)−0.0049 (10)
C70.082 (2)0.0495 (16)0.0436 (15)−0.0082 (16)0.0205 (15)−0.0045 (12)
C80.089 (2)0.0471 (17)0.0409 (15)−0.0074 (15)0.0191 (15)−0.0047 (12)
O30.108 (2)0.072 (2)0.063 (2)0.0000.0152 (18)0.000
O1—C61.251 (3)C5—C61.517 (3)
O2—C61.235 (3)N2—C81.479 (3)
N1—C51.332 (3)N2—H2A0.99 (3)
N1—C11.341 (3)N2—H2B0.96 (3)
C1—C21.367 (4)N2—H2C0.95 (3)
C1—H11.01 (3)C7—C81.478 (3)
C2—C31.364 (4)C7—C7i1.512 (5)
C2—H20.98 (2)C7—H7A0.96 (3)
C3—C41.380 (4)C7—H7B0.98 (3)
C3—H30.98 (3)C8—H8A0.95 (3)
C4—C51.383 (3)C8—H8B1.05 (3)
C4—H40.91 (2)O3—H3O0.92 (4)
C5—N1—C1117.7 (2)C8—N2—H2A108.6 (15)
N1—C1—C2123.1 (3)C8—N2—H2B110.4 (14)
N1—C1—H1117.5 (15)H2A—N2—H2B111 (2)
C2—C1—H1119.4 (15)C8—N2—H2C106.6 (17)
C3—C2—C1119.1 (3)H2A—N2—H2C108 (2)
C3—C2—H2122.5 (15)H2B—N2—H2C112 (2)
C1—C2—H2118.4 (15)C8—C7—C7i112.8 (3)
C2—C3—C4118.8 (3)C8—C7—H7A109.3 (19)
C2—C3—H3123.6 (16)C7i—C7—H7A112.5 (19)
C4—C3—H3117.5 (16)C8—C7—H7B106.8 (19)
C3—C4—C5119.0 (3)C7i—C7—H7B111.1 (19)
C3—C4—H4120.6 (14)H7A—C7—H7B104 (2)
C5—C4—H4120.4 (14)C7—C8—N2112.7 (2)
N1—C5—C4122.3 (2)C7—C8—H8A113.3 (19)
N1—C5—C6116.6 (2)N2—C8—H8A108.9 (19)
C4—C5—C6121.1 (2)C7—C8—H8B113.5 (17)
O2—C6—O1125.5 (2)N2—C8—H8B106.6 (17)
O2—C6—C5117.7 (2)H8A—C8—H8B101 (3)
O1—C6—C5116.8 (2)
C5—N1—C1—C2−1.1 (4)C3—C4—C5—C6−176.1 (2)
N1—C1—C2—C31.7 (5)N1—C5—C6—O2171.3 (2)
C1—C2—C3—C4−0.4 (4)C4—C5—C6—O2−10.4 (3)
C2—C3—C4—C5−1.4 (4)N1—C5—C6—O1−9.5 (3)
C1—N1—C5—C4−0.8 (4)C4—C5—C6—O1168.8 (2)
C1—N1—C5—C6177.5 (2)C7i—C7—C8—N2178.3 (3)
C3—C4—C5—N12.1 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2ii0.99 (3)1.77 (3)2.749 (3)170 (2)
N2—H2B···O1iii0.96 (3)1.84 (3)2.792 (3)176 (2)
N2—H2C···O1iv0.95 (3)2.26 (3)2.997 (3)134 (2)
N2—H2C···N1iv0.95 (3)2.06 (3)2.917 (3)149 (2)
O3—H3O···O1v0.92 (4)2.02 (4)2.926 (3)172 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.99 (3)1.77 (3)2.749 (3)170 (2)
N2—H2B⋯O1ii0.96 (3)1.84 (3)2.792 (3)176 (2)
N2—H2C⋯O1iii0.95 (3)2.26 (3)2.997 (3)134 (2)
N2—H2C⋯N1iii0.95 (3)2.06 (3)2.917 (3)149 (2)
O3—H3O⋯O1iv0.92 (4)2.02 (4)2.926 (3)172 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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