Literature DB >> 21577974

Methyl 2-[5-(4-hydroxy-phen-yl)-3-methyl-sulfanyl-1-benzofuran-2-yl]acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(18)H(16)O(4)S, the 4-hydroxy-phenyl ring is rotated out of the benzofuran plane, making a dihedral angle of 34.52 (6)°. The methyl group of the methyl-sulfanyl substituent is almost perpendicular to the plane of the benzofuran fragment [100.90 (8)°] and is slightly tilted towards it. The crystal structure is stabilized by inter-molecular O-H⋯O hydrogen bonds, and by inter-molecular C-H⋯π inter-actions between a methyl H atom of the methyl-sulfanyl substituent and the 4-hydroxy-phenyl ring.

Entities:  

Year:  2009        PMID: 21577974      PMCID: PMC2970204          DOI: 10.1107/S1600536809037763

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar alkyl 2-[5-(4-hydroxy­phen­yl)-3-methyl­sulfanyl-1-benzofuran-2-yl]acetate derivatives, see: Choi et al. (2006 ▶, 2009 ▶). For the pharmacological activity of benzofuran compounds, see: Howlett et al. (1999 ▶); Twyman & Allsop (1999 ▶). For natural products involving a benzofuran ring, see: Akgul & Anil (2003 ▶); von Reuss & König (2004 ▶).

Experimental

Crystal data

C18H16O4S M = 328.37 Monoclinic, a = 13.6661 (6) Å b = 7.6643 (3) Å c = 15.6344 (7) Å β = 95.4731 (6)° V = 1630.10 (12) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 173 K 0.45 × 0.25 × 0.25 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.940, T max = 0.961 13917 measured reflections 3703 independent reflections 2894 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.097 S = 1.08 3703 reflections 213 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809037763/si2201sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809037763/si2201Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16O4SF(000) = 688
Mr = 328.37Dx = 1.338 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6226 reflections
a = 13.6661 (6) Åθ = 2.6–27.3°
b = 7.6643 (3) ŵ = 0.22 mm1
c = 15.6344 (7) ÅT = 173 K
β = 95.4731 (6)°Block, colorless
V = 1630.10 (12) Å30.45 × 0.25 × 0.25 mm
Z = 4
Bruker SMART CCD diffractometer3703 independent reflections
Radiation source: fine-focus sealed tube2894 reflections with I > 2σ(I)
graphiteRint = 0.046
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 1.5°
φ and ω scansh = −17→17
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)k = −9→9
Tmin = 0.940, Tmax = 0.961l = −20→20
13917 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: difference Fourier map
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.038P)2 + 0.664P] where P = (Fo2 + 2Fc2)/3
3703 reflections(Δ/σ)max < 0.001
213 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.69956 (3)0.01335 (5)0.51042 (3)0.02878 (12)
O10.80580 (8)0.44720 (15)0.62041 (7)0.0290 (3)
O21.05303 (8)0.08785 (16)0.60370 (7)0.0330 (3)
O30.94920 (8)0.15452 (18)0.70121 (8)0.0379 (3)
O40.09318 (9)0.48769 (18)0.64861 (9)0.0377 (3)
H40.0789 (17)0.535 (3)0.6922 (17)0.061 (8)*
C10.72205 (11)0.2164 (2)0.55937 (9)0.0244 (3)
C20.65254 (11)0.33024 (19)0.59592 (9)0.0227 (3)
C30.55110 (11)0.3275 (2)0.60033 (9)0.0229 (3)
H30.51330.23620.57590.027*
C40.50698 (11)0.4634 (2)0.64192 (9)0.0236 (3)
C50.56623 (11)0.6008 (2)0.67804 (10)0.0277 (3)
H50.53650.69110.70570.033*
C60.66711 (12)0.6063 (2)0.67373 (10)0.0291 (3)
H60.70540.69770.69740.035*
C70.70754 (11)0.4684 (2)0.63246 (10)0.0254 (3)
C80.81116 (11)0.2933 (2)0.57520 (10)0.0268 (3)
C90.91070 (11)0.2406 (2)0.55381 (10)0.0289 (3)
H9A0.94500.34280.53540.035*
H9B0.90400.15910.50620.035*
C100.97139 (11)0.1573 (2)0.62834 (10)0.0266 (3)
C111.11920 (14)0.0120 (3)0.67179 (13)0.0460 (5)
H11A1.0857−0.07870.69970.055*
H11B1.14030.10060.71290.055*
H11C1.1754−0.03620.64780.055*
C120.39861 (11)0.46601 (19)0.64631 (10)0.0227 (3)
C130.33451 (11)0.4013 (2)0.57879 (10)0.0246 (3)
H130.36040.35310.53120.030*
C140.23358 (12)0.4071 (2)0.58084 (10)0.0272 (3)
H140.19250.36180.53540.033*
C150.19364 (11)0.4809 (2)0.65104 (10)0.0267 (3)
C160.25574 (12)0.5440 (2)0.71976 (10)0.0289 (3)
H160.22960.59190.76730.035*
C170.35686 (12)0.5352 (2)0.71715 (10)0.0273 (3)
H170.39790.57650.76370.033*
C180.62715 (13)0.0771 (2)0.41243 (12)0.0365 (4)
H18A0.56450.12010.42600.055*
H18B0.6176−0.02200.37500.055*
H18C0.66100.16710.38430.055*
U11U22U33U12U13U23
S10.0320 (2)0.0222 (2)0.0323 (2)0.00435 (16)0.00399 (16)−0.00155 (16)
O10.0219 (5)0.0333 (6)0.0313 (6)0.0002 (5)0.0002 (4)−0.0056 (5)
O20.0240 (6)0.0455 (7)0.0299 (6)0.0094 (5)0.0041 (4)0.0007 (5)
O30.0297 (6)0.0546 (8)0.0309 (6)0.0048 (6)0.0105 (5)0.0091 (6)
O40.0244 (6)0.0501 (8)0.0394 (7)−0.0021 (5)0.0082 (5)−0.0150 (6)
C10.0250 (8)0.0242 (7)0.0241 (7)0.0036 (6)0.0028 (6)0.0005 (6)
C20.0246 (7)0.0218 (7)0.0218 (7)0.0030 (6)0.0023 (6)0.0008 (6)
C30.0238 (7)0.0210 (7)0.0239 (7)0.0001 (6)0.0020 (6)−0.0002 (6)
C40.0253 (7)0.0241 (8)0.0212 (7)0.0030 (6)0.0011 (6)0.0011 (6)
C50.0279 (8)0.0268 (8)0.0277 (8)0.0059 (6)−0.0004 (6)−0.0059 (6)
C60.0299 (8)0.0275 (8)0.0289 (8)−0.0013 (7)−0.0031 (6)−0.0064 (6)
C70.0210 (7)0.0300 (8)0.0246 (8)0.0020 (6)−0.0006 (6)−0.0003 (6)
C80.0259 (8)0.0305 (8)0.0240 (7)0.0033 (6)0.0019 (6)−0.0001 (6)
C90.0227 (8)0.0370 (9)0.0274 (8)0.0022 (7)0.0039 (6)0.0001 (7)
C100.0204 (7)0.0295 (8)0.0304 (8)−0.0025 (6)0.0055 (6)−0.0002 (6)
C110.0311 (9)0.0670 (14)0.0392 (10)0.0158 (9)0.0007 (8)0.0111 (10)
C120.0255 (7)0.0190 (7)0.0238 (7)0.0035 (6)0.0033 (6)0.0010 (6)
C130.0290 (8)0.0223 (7)0.0232 (7)0.0026 (6)0.0061 (6)−0.0021 (6)
C140.0279 (8)0.0276 (8)0.0257 (8)−0.0010 (6)0.0006 (6)−0.0038 (6)
C150.0240 (7)0.0268 (8)0.0299 (8)0.0001 (6)0.0057 (6)−0.0007 (6)
C160.0311 (8)0.0314 (8)0.0252 (8)0.0018 (7)0.0080 (6)−0.0054 (7)
C170.0295 (8)0.0284 (8)0.0239 (8)0.0017 (6)0.0015 (6)−0.0039 (6)
C180.0385 (10)0.0337 (9)0.0361 (9)0.0017 (8)−0.0020 (7)−0.0023 (7)
S1—C11.7488 (16)C8—C91.487 (2)
S1—C181.8099 (18)C9—C101.506 (2)
O1—C81.3810 (19)C9—H9A0.9700
O1—C71.3833 (18)C9—H9B0.9700
O2—C101.3260 (18)C11—H11A0.9600
O2—C111.451 (2)C11—H11B0.9600
O3—C101.2067 (19)C11—H11C0.9600
O4—C151.3708 (19)C12—C131.397 (2)
O4—H40.81 (3)C12—C171.398 (2)
C1—C81.354 (2)C13—C141.383 (2)
C1—C21.447 (2)C13—H130.9300
C2—C71.390 (2)C14—C151.392 (2)
C2—C31.395 (2)C14—H140.9300
C3—C41.395 (2)C15—C161.391 (2)
C3—H30.9300C16—C171.388 (2)
C4—C51.413 (2)C16—H160.9300
C4—C121.489 (2)C17—H170.9300
C5—C61.387 (2)C18—H18A0.9600
C5—H50.9300C18—H18B0.9600
C6—C71.380 (2)C18—H18C0.9600
C6—H60.9300
C1—S1—C18100.90 (8)O3—C10—O2124.16 (15)
C8—O1—C7105.64 (12)O3—C10—C9124.63 (14)
C10—O2—C11115.50 (13)O2—C10—C9111.21 (13)
C15—O4—H4108.3 (17)O2—C11—H11A109.5
C8—C1—C2106.18 (14)O2—C11—H11B109.5
C8—C1—S1125.76 (12)H11A—C11—H11B109.5
C2—C1—S1127.94 (12)O2—C11—H11C109.5
C7—C2—C3119.49 (14)H11A—C11—H11C109.5
C7—C2—C1105.79 (13)H11B—C11—H11C109.5
C3—C2—C1134.71 (14)C13—C12—C17117.36 (14)
C2—C3—C4119.18 (14)C13—C12—C4121.01 (13)
C2—C3—H3120.4C17—C12—C4121.63 (14)
C4—C3—H3120.4C14—C13—C12121.72 (14)
C3—C4—C5119.09 (14)C14—C13—H13119.1
C3—C4—C12120.49 (14)C12—C13—H13119.1
C5—C4—C12120.41 (13)C13—C14—C15119.89 (14)
C6—C5—C4122.50 (14)C13—C14—H14120.1
C6—C5—H5118.8C15—C14—H14120.1
C4—C5—H5118.8O4—C15—C16122.95 (14)
C7—C6—C5116.33 (15)O4—C15—C14117.44 (14)
C7—C6—H6121.8C16—C15—C14119.61 (14)
C5—C6—H6121.8C17—C16—C15119.76 (14)
C6—C7—O1126.20 (14)C17—C16—H16120.1
C6—C7—C2123.41 (14)C15—C16—H16120.1
O1—C7—C2110.39 (13)C16—C17—C12121.63 (15)
C1—C8—O1111.98 (13)C16—C17—H17119.2
C1—C8—C9131.83 (15)C12—C17—H17119.2
O1—C8—C9116.18 (14)S1—C18—H18A109.5
C8—C9—C10112.89 (13)S1—C18—H18B109.5
C8—C9—H9A109.0H18A—C18—H18B109.5
C10—C9—H9A109.0S1—C18—H18C109.5
C8—C9—H9B109.0H18A—C18—H18C109.5
C10—C9—H9B109.0H18B—C18—H18C109.5
H9A—C9—H9B107.8
C18—S1—C1—C8−114.97 (15)S1—C1—C8—C93.7 (3)
C18—S1—C1—C269.48 (15)C7—O1—C8—C1−0.77 (17)
C8—C1—C2—C7−0.71 (17)C7—O1—C8—C9179.94 (13)
S1—C1—C2—C7175.53 (12)C1—C8—C9—C10−99.8 (2)
C8—C1—C2—C3178.91 (17)O1—C8—C9—C1079.33 (18)
S1—C1—C2—C3−4.8 (3)C11—O2—C10—O3−2.6 (2)
C7—C2—C3—C4−0.4 (2)C11—O2—C10—C9176.96 (15)
C1—C2—C3—C4−179.96 (16)C8—C9—C10—O3−10.1 (2)
C2—C3—C4—C50.4 (2)C8—C9—C10—O2170.26 (14)
C2—C3—C4—C12178.85 (13)C3—C4—C12—C13−34.2 (2)
C3—C4—C5—C60.1 (2)C5—C4—C12—C13144.26 (15)
C12—C4—C5—C6−178.41 (14)C3—C4—C12—C17146.78 (15)
C4—C5—C6—C7−0.5 (2)C5—C4—C12—C17−34.8 (2)
C5—C6—C7—O1179.75 (14)C17—C12—C13—C140.8 (2)
C5—C6—C7—C20.5 (2)C4—C12—C13—C14−178.21 (14)
C8—O1—C7—C6−179.09 (15)C12—C13—C14—C150.8 (2)
C8—O1—C7—C20.28 (17)C13—C14—C15—O4178.18 (15)
C3—C2—C7—C60.0 (2)C13—C14—C15—C16−1.8 (2)
C1—C2—C7—C6179.65 (15)O4—C15—C16—C17−178.96 (16)
C3—C2—C7—O1−179.43 (13)C14—C15—C16—C171.0 (2)
C1—C2—C7—O10.26 (17)C15—C16—C17—C120.8 (3)
C2—C1—C8—O10.92 (18)C13—C12—C17—C16−1.7 (2)
S1—C1—C8—O1−175.42 (11)C4—C12—C17—C16177.40 (15)
C2—C1—C8—C9−179.93 (16)
D—H···AD—HH···AD···AD—H···A
O4—H4···O3i0.81 (3)1.97 (3)2.7826 (18)177 (2)
C18—H18C···Cgii0.962.883.762 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O3i0.81 (3)1.97 (3)2.7826 (18)177 (2)
C18—H18CCgii0.962.883.762 (2)153

Symmetry codes: (i) ; (ii) . Cg is the centroid of the C12–C17 phenyl ring.

  5 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Isopropyl 2-[5-(4-hydroxy-phen-yl)-3-methyl-sulfanyl-1-benzofuran-2-yl]acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29

5.  Corsifurans A-C, 2-arylbenzofurans of presumed stilbenoid origin from Corsinia coriandrina (Hepaticae).

Authors:  Stephan H von Reuss; Wilfried A König
Journal:  Phytochemistry       Date:  2004-12       Impact factor: 4.072

  5 in total

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