| Literature DB >> 21577895 |
Narsimha Reddy Penthala, Thirupathi Reddy Yerram Reddy, Sean Parkin, Peter A Crooks.
Abstract
In the title compound, C(18)H(16)N(4)O(3)·C(2)H(5)OH, mol-ecules are linked into chains by a series of inter-molecular N-H⋯O, N-H⋯N and O-H⋯O hydrogen bonds which stabilize the crystal structure. The indole and creatinine units make a dihedral angle of 56.45 (4)°. The title compound has two chiral centres. The crystal structure indicates the compound is racemic (RR and SS).Entities:
Year: 2009 PMID: 21577895 PMCID: PMC2970360 DOI: 10.1107/S1600536809033881
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H16N4O3·C2H6O | |
| Triclinic, | |
| Hall symbol: -P 1 | Cu |
| Cell parameters from 9955 reflections | |
| θ = 3.8–68.3° | |
| µ = 0.82 mm−1 | |
| α = 78.152 (1)° | |
| β = 74.413 (1)° | Block, colourless |
| γ = 74.090 (1)° | 0.11 × 0.11 × 0.08 mm |
| Bruker X8 Proteum diffractometer | 3294 independent reflections |
| Radiation source: fine-focus rotating anode | 3126 reflections with |
| graded multilayer optics | |
| Detector resolution: 5.6 pixels mm-1 | θmax = 68.3°, θmin = 3.8° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 13576 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3294 reflections | Δρmax = 0.37 e Å−3 |
| 258 parameters | Δρmin = −0.41 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0068 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.37921 (12) | 0.08545 (8) | 0.23487 (7) | 0.0188 (2) | |
| N1 | 0.16513 (14) | 0.24923 (9) | 0.32617 (8) | 0.0159 (2) | |
| C1 | 0.29249 (17) | 0.19721 (11) | 0.23418 (10) | 0.0161 (3) | |
| O2 | 0.50070 (12) | 0.30752 (8) | 0.07786 (7) | 0.0202 (2) | |
| H2 | 0.5529 | 0.3158 | 0.1284 | 0.030* | |
| N2 | 0.03753 (14) | 0.13607 (10) | 0.04645 (8) | 0.0174 (2) | |
| C2 | 0.30826 (17) | 0.30455 (11) | 0.12863 (10) | 0.0173 (3) | |
| O3 | −0.10708 (12) | 0.31235 (9) | 0.14096 (8) | 0.0232 (2) | |
| N3 | 0.26263 (14) | 0.00056 (10) | −0.07643 (9) | 0.0185 (2) | |
| H3A | 0.3780 | −0.0201 | −0.1202 | 0.022* | |
| H3B | 0.1798 | −0.0454 | −0.0697 | 0.022* | |
| C3 | 0.18841 (17) | 0.42116 (12) | 0.18239 (10) | 0.0178 (3) | |
| N4 | 0.33379 (14) | 0.17486 (10) | −0.02748 (8) | 0.0175 (2) | |
| C4 | 0.15762 (18) | 0.54854 (12) | 0.13580 (11) | 0.0210 (3) | |
| H4 | 0.2148 | 0.5746 | 0.0573 | 0.025* | |
| C5 | 0.04026 (19) | 0.63828 (12) | 0.20688 (11) | 0.0222 (3) | |
| H5 | 0.0180 | 0.7266 | 0.1768 | 0.027* | |
| C6 | −0.04402 (18) | 0.59920 (12) | 0.32105 (11) | 0.0212 (3) | |
| H6 | −0.1239 | 0.6615 | 0.3680 | 0.025* | |
| C7 | −0.01412 (17) | 0.47040 (12) | 0.36854 (10) | 0.0183 (3) | |
| H7 | −0.0728 | 0.4437 | 0.4465 | 0.022* | |
| C8 | 0.10411 (17) | 0.38371 (11) | 0.29745 (10) | 0.0168 (3) | |
| C9 | 0.12524 (17) | 0.18231 (11) | 0.44190 (10) | 0.0161 (3) | |
| C10 | 0.27258 (18) | 0.12805 (11) | 0.49893 (11) | 0.0192 (3) | |
| H10 | 0.3994 | 0.1339 | 0.4615 | 0.023* | |
| C11 | 0.2316 (2) | 0.06493 (12) | 0.61182 (11) | 0.0233 (3) | |
| H11 | 0.3312 | 0.0268 | 0.6516 | 0.028* | |
| C12 | 0.0459 (2) | 0.05757 (12) | 0.66629 (11) | 0.0247 (3) | |
| H12 | 0.0185 | 0.0150 | 0.7435 | 0.030* | |
| C13 | −0.10000 (19) | 0.11217 (12) | 0.60827 (11) | 0.0233 (3) | |
| H13 | −0.2271 | 0.1071 | 0.6460 | 0.028* | |
| C14 | −0.06071 (18) | 0.17416 (12) | 0.49517 (11) | 0.0195 (3) | |
| H14 | −0.1599 | 0.2105 | 0.4548 | 0.023* | |
| C15 | 0.22403 (17) | 0.28338 (11) | 0.03230 (10) | 0.0173 (3) | |
| H15 | 0.2094 | 0.3626 | −0.0256 | 0.021* | |
| C16 | 0.03012 (17) | 0.24701 (12) | 0.08034 (10) | 0.0175 (3) | |
| C17 | 0.21402 (17) | 0.09987 (11) | −0.02122 (10) | 0.0162 (3) | |
| C18 | 0.49912 (18) | 0.18208 (12) | −0.12386 (10) | 0.0207 (3) | |
| H18A | 0.5813 | 0.0964 | −0.1304 | 0.031* | |
| H18B | 0.5707 | 0.2375 | −0.1096 | 0.031* | |
| H18C | 0.4562 | 0.2172 | −0.1962 | 0.031* | |
| O1S | 0.57472 (13) | 0.29564 (10) | 0.30873 (9) | 0.0304 (3) | |
| H1S | 0.6853 | 0.2952 | 0.2685 | 0.046* | |
| C1S | 0.5142 (2) | 0.39650 (15) | 0.37674 (14) | 0.0336 (3) | |
| H1S1 | 0.5991 | 0.3811 | 0.4309 | 0.040* | |
| H1S2 | 0.3837 | 0.3965 | 0.4237 | 0.040* | |
| C2S | 0.5151 (2) | 0.52356 (16) | 0.30585 (16) | 0.0413 (4) | |
| H2S1 | 0.6444 | 0.5248 | 0.2601 | 0.062* | |
| H2S2 | 0.4729 | 0.5894 | 0.3570 | 0.062* | |
| H2S3 | 0.4285 | 0.5405 | 0.2535 | 0.062* |
| O1 | 0.0220 (4) | 0.0146 (4) | 0.0180 (4) | −0.0041 (3) | −0.0011 (3) | −0.0034 (3) |
| N1 | 0.0206 (5) | 0.0124 (5) | 0.0138 (5) | −0.0041 (4) | −0.0026 (4) | −0.0012 (4) |
| C1 | 0.0187 (6) | 0.0160 (6) | 0.0152 (6) | −0.0067 (5) | −0.0032 (5) | −0.0030 (4) |
| O2 | 0.0216 (5) | 0.0249 (5) | 0.0171 (4) | −0.0115 (4) | −0.0028 (3) | −0.0033 (3) |
| N2 | 0.0185 (5) | 0.0188 (5) | 0.0149 (5) | −0.0057 (4) | −0.0020 (4) | −0.0028 (4) |
| C2 | 0.0216 (6) | 0.0160 (6) | 0.0145 (6) | −0.0076 (5) | −0.0020 (5) | −0.0016 (5) |
| O3 | 0.0225 (5) | 0.0246 (5) | 0.0212 (5) | −0.0051 (4) | 0.0000 (4) | −0.0080 (4) |
| N3 | 0.0177 (5) | 0.0193 (5) | 0.0199 (5) | −0.0067 (4) | −0.0011 (4) | −0.0068 (4) |
| C3 | 0.0231 (6) | 0.0168 (6) | 0.0160 (6) | −0.0068 (5) | −0.0061 (5) | −0.0026 (5) |
| N4 | 0.0191 (5) | 0.0193 (5) | 0.0151 (5) | −0.0075 (4) | 0.0000 (4) | −0.0056 (4) |
| C4 | 0.0289 (7) | 0.0183 (6) | 0.0182 (6) | −0.0084 (5) | −0.0086 (5) | 0.0002 (5) |
| C5 | 0.0306 (7) | 0.0136 (6) | 0.0253 (7) | −0.0054 (5) | −0.0126 (5) | −0.0003 (5) |
| C6 | 0.0253 (6) | 0.0173 (6) | 0.0234 (6) | −0.0017 (5) | −0.0096 (5) | −0.0068 (5) |
| C7 | 0.0220 (6) | 0.0179 (6) | 0.0165 (6) | −0.0048 (5) | −0.0061 (5) | −0.0033 (5) |
| C8 | 0.0215 (6) | 0.0140 (6) | 0.0173 (6) | −0.0058 (5) | −0.0071 (5) | −0.0017 (4) |
| C9 | 0.0236 (6) | 0.0110 (5) | 0.0131 (6) | −0.0043 (4) | −0.0017 (5) | −0.0028 (4) |
| C10 | 0.0230 (6) | 0.0150 (6) | 0.0188 (6) | −0.0033 (5) | −0.0032 (5) | −0.0042 (5) |
| C11 | 0.0337 (7) | 0.0156 (6) | 0.0194 (6) | −0.0009 (5) | −0.0089 (5) | −0.0024 (5) |
| C12 | 0.0409 (8) | 0.0152 (6) | 0.0154 (6) | −0.0078 (5) | −0.0014 (5) | −0.0011 (5) |
| C13 | 0.0280 (7) | 0.0191 (6) | 0.0206 (6) | −0.0099 (5) | 0.0044 (5) | −0.0053 (5) |
| C14 | 0.0221 (6) | 0.0162 (6) | 0.0203 (6) | −0.0047 (5) | −0.0032 (5) | −0.0043 (5) |
| C15 | 0.0216 (6) | 0.0165 (6) | 0.0140 (6) | −0.0060 (5) | −0.0023 (5) | −0.0029 (4) |
| C16 | 0.0201 (6) | 0.0190 (6) | 0.0130 (5) | −0.0053 (5) | −0.0032 (5) | −0.0014 (4) |
| C17 | 0.0186 (6) | 0.0179 (6) | 0.0126 (5) | −0.0056 (5) | −0.0039 (4) | −0.0005 (4) |
| C18 | 0.0218 (6) | 0.0246 (6) | 0.0164 (6) | −0.0099 (5) | 0.0011 (5) | −0.0054 (5) |
| O1S | 0.0213 (5) | 0.0303 (5) | 0.0384 (6) | −0.0077 (4) | −0.0007 (4) | −0.0078 (4) |
| C1S | 0.0254 (7) | 0.0339 (8) | 0.0426 (9) | −0.0049 (6) | −0.0067 (6) | −0.0115 (7) |
| C2S | 0.0424 (9) | 0.0358 (9) | 0.0530 (10) | −0.0102 (7) | −0.0231 (8) | −0.0044 (7) |
| O1—C1 | 1.2226 (15) | C7—C8 | 1.3770 (17) |
| N1—C1 | 1.3658 (15) | C7—H7 | 0.9500 |
| N1—C8 | 1.4220 (15) | C9—C14 | 1.3876 (18) |
| N1—C9 | 1.4353 (15) | C9—C10 | 1.3886 (18) |
| C1—C2 | 1.5531 (16) | C10—C11 | 1.3929 (18) |
| O2—C2 | 1.4136 (15) | C10—H10 | 0.9500 |
| O2—H2 | 0.8400 | C11—C12 | 1.386 (2) |
| N2—C16 | 1.3477 (16) | C11—H11 | 0.9500 |
| N2—C17 | 1.3562 (15) | C12—C13 | 1.388 (2) |
| C2—C3 | 1.5071 (17) | C12—H12 | 0.9500 |
| C2—C15 | 1.5472 (16) | C13—C14 | 1.3895 (18) |
| O3—C16 | 1.2314 (15) | C13—H13 | 0.9500 |
| N3—C17 | 1.3123 (16) | C14—H14 | 0.9500 |
| N3—H3A | 0.8800 | C15—C16 | 1.5419 (17) |
| N3—H3B | 0.8800 | C15—H15 | 1.0000 |
| C3—C4 | 1.3794 (17) | C18—H18A | 0.9800 |
| C3—C8 | 1.3918 (17) | C18—H18B | 0.9800 |
| N4—C17 | 1.3546 (16) | C18—H18C | 0.9800 |
| N4—C15 | 1.4560 (15) | O1S—C1S | 1.4181 (18) |
| N4—C18 | 1.4621 (15) | O1S—H1S | 0.8400 |
| C4—C5 | 1.3972 (18) | C1S—C2S | 1.483 (2) |
| C4—H4 | 0.9500 | C1S—H1S1 | 0.9900 |
| C5—C6 | 1.3870 (19) | C1S—H1S2 | 0.9900 |
| C5—H5 | 0.9500 | C2S—H2S1 | 0.9800 |
| C6—C7 | 1.3960 (18) | C2S—H2S2 | 0.9800 |
| C6—H6 | 0.9500 | C2S—H2S3 | 0.9800 |
| C1—N1—C8 | 110.74 (10) | C12—C11—C10 | 120.23 (12) |
| C1—N1—C9 | 124.57 (10) | C12—C11—H11 | 119.9 |
| C8—N1—C9 | 123.74 (10) | C10—C11—H11 | 119.9 |
| O1—C1—N1 | 125.87 (11) | C11—C12—C13 | 120.17 (12) |
| O1—C1—C2 | 125.91 (10) | C11—C12—H12 | 119.9 |
| N1—C1—C2 | 108.21 (10) | C13—C12—H12 | 119.9 |
| C2—O2—H2 | 109.5 | C12—C13—C14 | 120.17 (12) |
| C16—N2—C17 | 106.75 (10) | C12—C13—H13 | 119.9 |
| O2—C2—C3 | 115.27 (10) | C14—C13—H13 | 119.9 |
| O2—C2—C15 | 106.63 (9) | C9—C14—C13 | 119.20 (12) |
| C3—C2—C15 | 110.59 (10) | C9—C14—H14 | 120.4 |
| O2—C2—C1 | 111.04 (9) | C13—C14—H14 | 120.4 |
| C3—C2—C1 | 101.86 (9) | N4—C15—C16 | 100.87 (9) |
| C15—C2—C1 | 111.52 (9) | N4—C15—C2 | 114.64 (10) |
| C17—N3—H3A | 120.0 | C16—C15—C2 | 112.68 (9) |
| C17—N3—H3B | 120.0 | N4—C15—H15 | 109.4 |
| H3A—N3—H3B | 120.0 | C16—C15—H15 | 109.4 |
| C4—C3—C8 | 120.49 (11) | C2—C15—H15 | 109.4 |
| C4—C3—C2 | 130.40 (11) | O3—C16—N2 | 127.04 (11) |
| C8—C3—C2 | 109.10 (10) | O3—C16—C15 | 123.08 (11) |
| C17—N4—C15 | 107.56 (10) | N2—C16—C15 | 109.88 (10) |
| C17—N4—C18 | 122.36 (10) | N3—C17—N4 | 123.26 (11) |
| C15—N4—C18 | 122.80 (10) | N3—C17—N2 | 122.16 (11) |
| C3—C4—C5 | 118.36 (11) | N4—C17—N2 | 114.58 (10) |
| C3—C4—H4 | 120.8 | N4—C18—H18A | 109.5 |
| C5—C4—H4 | 120.8 | N4—C18—H18B | 109.5 |
| C6—C5—C4 | 120.40 (11) | H18A—C18—H18B | 109.5 |
| C6—C5—H5 | 119.8 | N4—C18—H18C | 109.5 |
| C4—C5—H5 | 119.8 | H18A—C18—H18C | 109.5 |
| C5—C6—C7 | 121.51 (12) | H18B—C18—H18C | 109.5 |
| C5—C6—H6 | 119.2 | C1S—O1S—H1S | 109.5 |
| C7—C6—H6 | 119.2 | O1S—C1S—C2S | 112.92 (14) |
| C8—C7—C6 | 117.14 (11) | O1S—C1S—H1S1 | 109.0 |
| C8—C7—H7 | 121.4 | C2S—C1S—H1S1 | 109.0 |
| C6—C7—H7 | 121.4 | O1S—C1S—H1S2 | 109.0 |
| C7—C8—C3 | 122.10 (11) | C2S—C1S—H1S2 | 109.0 |
| C7—C8—N1 | 128.13 (11) | H1S1—C1S—H1S2 | 107.8 |
| C3—C8—N1 | 109.73 (10) | C1S—C2S—H2S1 | 109.5 |
| C14—C9—C10 | 121.20 (11) | C1S—C2S—H2S2 | 109.5 |
| C14—C9—N1 | 119.23 (11) | H2S1—C2S—H2S2 | 109.5 |
| C10—C9—N1 | 119.56 (11) | C1S—C2S—H2S3 | 109.5 |
| C9—C10—C11 | 119.02 (12) | H2S1—C2S—H2S3 | 109.5 |
| C9—C10—H10 | 120.5 | H2S2—C2S—H2S3 | 109.5 |
| C11—C10—H10 | 120.5 | ||
| C8—N1—C1—O1 | 174.88 (11) | C1—N1—C9—C10 | 57.36 (16) |
| C9—N1—C1—O1 | 5.70 (19) | C8—N1—C9—C10 | −110.45 (13) |
| C8—N1—C1—C2 | −5.06 (13) | C14—C9—C10—C11 | −0.27 (18) |
| C9—N1—C1—C2 | −174.24 (10) | N1—C9—C10—C11 | 179.09 (10) |
| O1—C1—C2—O2 | −50.77 (15) | C9—C10—C11—C12 | −0.49 (18) |
| N1—C1—C2—O2 | 129.18 (10) | C10—C11—C12—C13 | 0.53 (19) |
| O1—C1—C2—C3 | −174.02 (12) | C11—C12—C13—C14 | 0.19 (19) |
| N1—C1—C2—C3 | 5.93 (12) | C10—C9—C14—C13 | 0.99 (18) |
| O1—C1—C2—C15 | 68.01 (15) | N1—C9—C14—C13 | −178.38 (11) |
| N1—C1—C2—C15 | −112.05 (11) | C12—C13—C14—C9 | −0.94 (18) |
| O2—C2—C3—C4 | 53.97 (17) | C17—N4—C15—C16 | 4.68 (12) |
| C15—C2—C3—C4 | −67.06 (16) | C18—N4—C15—C16 | 155.35 (10) |
| C1—C2—C3—C4 | 174.30 (13) | C17—N4—C15—C2 | 126.01 (10) |
| O2—C2—C3—C8 | −125.10 (11) | C18—N4—C15—C2 | −83.31 (13) |
| C15—C2—C3—C8 | 113.87 (11) | O2—C2—C15—N4 | 52.11 (12) |
| C1—C2—C3—C8 | −4.77 (12) | C3—C2—C15—N4 | 178.14 (9) |
| C8—C3—C4—C5 | 0.01 (18) | C1—C2—C15—N4 | −69.27 (13) |
| C2—C3—C4—C5 | −178.97 (12) | O2—C2—C15—C16 | 166.73 (9) |
| C3—C4—C5—C6 | −0.60 (19) | C3—C2—C15—C16 | −67.24 (13) |
| C4—C5—C6—C7 | 0.32 (19) | C1—C2—C15—C16 | 45.36 (13) |
| C5—C6—C7—C8 | 0.56 (18) | C17—N2—C16—O3 | 178.51 (12) |
| C6—C7—C8—C3 | −1.17 (18) | C17—N2—C16—C15 | −1.87 (13) |
| C6—C7—C8—N1 | 176.39 (11) | N4—C15—C16—O3 | 177.90 (11) |
| C4—C3—C8—C7 | 0.91 (19) | C2—C15—C16—O3 | 55.19 (15) |
| C2—C3—C8—C7 | −179.91 (11) | N4—C15—C16—N2 | −1.74 (12) |
| C4—C3—C8—N1 | −177.05 (11) | C2—C15—C16—N2 | −124.45 (11) |
| C2—C3—C8—N1 | 2.13 (14) | C15—N4—C17—N3 | 172.92 (11) |
| C1—N1—C8—C7 | −175.84 (12) | C18—N4—C17—N3 | 22.09 (18) |
| C9—N1—C8—C7 | −6.55 (19) | C15—N4—C17—N2 | −6.58 (13) |
| C1—N1—C8—C3 | 1.96 (14) | C18—N4—C17—N2 | −157.41 (11) |
| C9—N1—C8—C3 | 171.25 (11) | C16—N2—C17—N3 | −174.16 (11) |
| C1—N1—C9—C14 | −123.26 (13) | C16—N2—C17—N4 | 5.35 (14) |
| C8—N1—C9—C14 | 68.92 (15) |
| H··· | ||||
| O2—H2···O1S | 0.84 | 2.19 | 2.9579 (14) | 152 |
| O2—H2···O3i | 0.84 | 2.58 | 3.2440 (12) | 137 |
| N3—H3A···O1ii | 0.88 | 2.02 | 2.8898 (13) | 169 |
| N3—H3B···N2iii | 0.88 | 2.06 | 2.9391 (15) | 174 |
| O1S—H1S···O3i | 0.84 | 1.89 | 2.7048 (13) | 162 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O1 | 0.84 | 2.19 | 2.9579 (14) | 152 |
| O2—H2⋯O3i | 0.84 | 2.58 | 3.2440 (12) | 137 |
| N3—H3 | 0.88 | 2.02 | 2.8898 (13) | 169 |
| N3—H3 | 0.88 | 2.06 | 2.9391 (15) | 174 |
| O1 | 0.84 | 1.89 | 2.7048 (13) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) .