Literature DB >> 21577831

2,2,4-Trimethyl-5-(4-tolyl-sulfon-yl)-2,3,4,5-tetra-hydro-1H-1,5-benzo-diazepine.

K Ravichandran, K Sathiyaraj, S S Ilango, S Ponnuswamy, M N Ponnuswamy.   

Abstract

In the title compound, C(19)H(24)N(2)O(2)S, the benzodiazepine ring adopts a distorted boat conformation. The S atom shows a distorted tetra-hedral geometry, with the O-S-O [119.16 (14)°] and N-S-C [107.48 (10)°] angles deviating significantly from ideal values. The crystal packing is controlled by C-H⋯O, N-H⋯O and C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21577831      PMCID: PMC2970367          DOI: 10.1107/S1600536809034837

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of benzodiazepines in the treatment of gastrointestinal and central nervous system disorders, see: Rahbaek et al. (1999 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶);) ; Nardelli (1983 ▶). For the Thorpe-Ingold effect, see: Bassindale (1984 ▶). For details of the preparation, see: Ponnuswamy et al. (2006 ▶).

Experimental

Crystal data

C19H24N2O2S M = 344.46 Orthorhombic, a = 7.3658 (3) Å b = 14.8013 (8) Å c = 17.4556 (10) Å V = 1903.07 (17) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 293 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.957, T max = 0.964 13544 measured reflections 5154 independent reflections 3278 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.145 S = 1.04 5154 reflections 224 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 2171 Friedel pairs Flack parameter: −0.12 (9) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034837/bt5042sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034837/bt5042Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H24N2O2SF(000) = 736
Mr = 344.46Dx = 1.202 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2546 reflections
a = 7.3658 (3) Åθ = 1.8–29.4°
b = 14.8013 (8) ŵ = 0.18 mm1
c = 17.4556 (10) ÅT = 293 K
V = 1903.07 (17) Å3Block, colourless
Z = 40.25 × 0.20 × 0.20 mm
Bruker Kappa APEXII area-detector diffractometer5154 independent reflections
Radiation source: fine-focus sealed tube3278 reflections with I > 2σ(I)
graphiteRint = 0.034
ω and φ scansθmax = 29.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −5→10
Tmin = 0.957, Tmax = 0.964k = −20→18
13544 measured reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.145w = 1/[σ2(Fo2) + (0.0742P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.009
5154 reflectionsΔρmax = 0.18 e Å3
224 parametersΔρmin = −0.19 e Å3
0 restraintsAbsolute structure: Flack (1983), 2171 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.12 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.08799 (9)0.63541 (4)0.80960 (4)0.0620 (2)
O10.2717 (3)0.63113 (17)0.78264 (12)0.0849 (6)
O20.0096 (3)0.55749 (13)0.84498 (12)0.0870 (7)
N1−0.0887 (3)0.84795 (14)0.70370 (13)0.0566 (5)
H1−0.072 (4)0.897 (2)0.6945 (18)0.073 (9)*
C2−0.2833 (3)0.83013 (16)0.71790 (15)0.0520 (6)
C3−0.3323 (3)0.73221 (16)0.70025 (16)0.0577 (6)
H3A−0.46230.72570.70740.069*
H3B−0.30780.72180.64640.069*
C4−0.2402 (3)0.65759 (15)0.74511 (17)0.0589 (7)
H4−0.27190.66420.79930.071*
N5−0.0387 (3)0.66325 (13)0.73728 (11)0.0524 (5)
C60.0396 (3)0.70241 (16)0.66986 (13)0.0497 (6)
C70.1455 (3)0.6493 (2)0.62250 (16)0.0659 (7)
H70.15650.58770.63200.079*
C80.2354 (4)0.6879 (3)0.56082 (18)0.0855 (10)
H80.30700.65240.52890.103*
C90.2182 (4)0.7779 (3)0.54737 (17)0.0862 (11)
H90.28190.80410.50710.103*
C100.1077 (4)0.8310 (2)0.59246 (15)0.0676 (7)
H100.09540.89220.58140.081*
C110.0141 (3)0.79417 (17)0.65442 (13)0.0501 (6)
C12−0.3967 (5)0.8894 (2)0.6654 (2)0.0813 (9)
H12A−0.37350.95180.67670.122*
H12B−0.52310.87660.67320.122*
H12C−0.36520.87730.61300.122*
C13−0.3238 (4)0.8554 (2)0.80092 (17)0.0704 (7)
H13A−0.25260.81820.83450.106*
H13B−0.45040.84600.81130.106*
H13C−0.29390.91770.80920.106*
C14−0.3082 (5)0.5663 (2)0.7171 (3)0.0999 (13)
H14A−0.28210.56000.66350.150*
H14B−0.43690.56230.72510.150*
H14C−0.24850.51900.74510.150*
C150.0750 (3)0.72366 (16)0.87704 (14)0.0516 (5)
C160.1482 (4)0.80712 (19)0.85876 (15)0.0640 (7)
H160.20350.81650.81150.077*
C170.1378 (4)0.8753 (2)0.91126 (17)0.0759 (8)
H170.18730.93130.89880.091*
C180.0569 (4)0.8647 (2)0.98198 (17)0.0722 (7)
C19−0.0125 (4)0.7808 (2)0.99895 (18)0.0796 (9)
H19−0.06660.77121.04640.095*
C20−0.0035 (4)0.7106 (2)0.94719 (17)0.0700 (8)
H20−0.05080.65430.96000.084*
C210.0455 (7)0.9425 (3)1.0377 (2)0.1170 (14)
H21A−0.01470.92291.08360.176*
H21B−0.02170.99111.01500.176*
H21C0.16570.96281.05010.176*
U11U22U33U12U13U23
S10.0663 (4)0.0509 (3)0.0687 (4)0.0183 (3)0.0157 (3)0.0095 (3)
O10.0646 (11)0.1087 (16)0.0812 (13)0.0422 (12)0.0166 (10)0.0088 (13)
O20.1298 (19)0.0453 (10)0.0858 (13)0.0116 (11)0.0213 (13)0.0147 (10)
N10.0579 (12)0.0403 (11)0.0715 (13)−0.0081 (9)0.0017 (11)−0.0036 (10)
C20.0474 (12)0.0439 (12)0.0648 (15)0.0013 (9)−0.0032 (11)−0.0035 (11)
C30.0432 (11)0.0530 (13)0.0770 (17)−0.0057 (10)0.0066 (12)−0.0146 (13)
C40.0530 (13)0.0434 (13)0.0803 (17)−0.0027 (11)0.0239 (13)−0.0049 (12)
N50.0497 (11)0.0486 (11)0.0591 (11)0.0025 (8)0.0130 (9)−0.0015 (9)
C60.0443 (12)0.0558 (13)0.0491 (12)−0.0020 (10)0.0070 (10)−0.0089 (10)
C70.0542 (14)0.0773 (19)0.0663 (15)0.0042 (13)0.0106 (12)−0.0189 (15)
C80.0705 (19)0.128 (3)0.0583 (18)−0.001 (2)0.0171 (16)−0.0234 (19)
C90.0677 (19)0.140 (4)0.0504 (16)−0.031 (2)0.0072 (14)0.005 (2)
C100.0623 (16)0.087 (2)0.0541 (14)−0.0195 (15)−0.0074 (13)0.0098 (14)
C110.0442 (11)0.0583 (14)0.0478 (12)−0.0100 (10)−0.0031 (10)−0.0029 (11)
C120.081 (2)0.0666 (17)0.097 (2)0.0052 (16)−0.0252 (18)0.0046 (16)
C130.0620 (15)0.0673 (17)0.0819 (18)0.0051 (13)0.0077 (14)−0.0183 (16)
C140.077 (2)0.0482 (15)0.174 (4)−0.0146 (14)0.024 (2)−0.018 (2)
C150.0412 (11)0.0547 (13)0.0590 (13)0.0080 (10)0.0036 (11)0.0126 (11)
C160.0731 (17)0.0651 (17)0.0538 (14)−0.0065 (14)−0.0021 (13)0.0170 (13)
C170.091 (2)0.0607 (17)0.0764 (19)−0.0149 (15)−0.0173 (16)0.0148 (15)
C180.0755 (18)0.0681 (18)0.0730 (17)0.0079 (16)−0.0034 (15)−0.0024 (16)
C190.079 (2)0.092 (2)0.0674 (17)0.0025 (17)0.0194 (16)−0.0025 (17)
C200.0712 (17)0.0671 (18)0.0717 (17)−0.0057 (14)0.0213 (15)0.0072 (14)
C210.144 (4)0.103 (3)0.104 (3)0.019 (3)−0.017 (3)−0.032 (2)
S1—O21.430 (2)C10—C111.394 (3)
S1—O11.434 (2)C10—H100.9300
S1—N51.623 (2)C12—H12A0.9600
S1—C151.761 (3)C12—H12B0.9600
N1—C111.395 (3)C12—H12C0.9600
N1—C21.478 (3)C13—H13A0.9600
N1—H10.75 (3)C13—H13B0.9600
C2—C121.519 (4)C13—H13C0.9600
C2—C131.526 (4)C14—H14A0.9600
C2—C31.525 (3)C14—H14B0.9600
C3—C41.515 (4)C14—H14C0.9600
C3—H3A0.9700C15—C201.368 (4)
C3—H3B0.9700C15—C161.385 (4)
C4—N51.493 (3)C16—C171.366 (4)
C4—C141.522 (4)C16—H160.9300
C4—H40.9800C17—C181.380 (4)
N5—C61.433 (3)C17—H170.9300
C6—C71.382 (3)C18—C191.375 (4)
C6—C111.397 (3)C18—C211.510 (5)
C7—C81.387 (5)C19—C201.379 (4)
C7—H70.9300C19—H190.9300
C8—C91.359 (5)C20—H200.9300
C8—H80.9300C21—H21A0.9600
C9—C101.378 (5)C21—H21B0.9600
C9—H90.9300C21—H21C0.9600
O2—S1—O1119.16 (14)N1—C11—C10121.6 (2)
O2—S1—N5107.96 (13)N1—C11—C6120.6 (2)
O1—S1—N5107.36 (11)C10—C11—C6117.6 (2)
O2—S1—C15106.71 (12)C2—C12—H12A109.5
O1—S1—C15107.67 (14)C2—C12—H12B109.5
N5—S1—C15107.48 (10)H12A—C12—H12B109.5
C11—N1—C2121.86 (19)C2—C12—H12C109.5
C11—N1—H1109 (2)H12A—C12—H12C109.5
C2—N1—H1112 (3)H12B—C12—H12C109.5
N1—C2—C12109.2 (2)C2—C13—H13A109.5
N1—C2—C13107.8 (2)C2—C13—H13B109.5
C12—C2—C13108.9 (2)H13A—C13—H13B109.5
N1—C2—C3111.42 (19)C2—C13—H13C109.5
C12—C2—C3107.3 (2)H13A—C13—H13C109.5
C13—C2—C3112.2 (2)H13B—C13—H13C109.5
C4—C3—C2118.8 (2)C4—C14—H14A109.5
C4—C3—H3A107.6C4—C14—H14B109.5
C2—C3—H3A107.6H14A—C14—H14B109.5
C4—C3—H3B107.6C4—C14—H14C109.5
C2—C3—H3B107.6H14A—C14—H14C109.5
H3A—C3—H3B107.0H14B—C14—H14C109.5
N5—C4—C3110.93 (19)C20—C15—C16119.8 (3)
N5—C4—C14110.3 (2)C20—C15—S1121.1 (2)
C3—C4—C14109.5 (3)C16—C15—S1119.09 (19)
N5—C4—H4108.7C17—C16—C15118.9 (3)
C3—C4—H4108.7C17—C16—H16120.6
C14—C4—H4108.7C15—C16—H16120.6
C6—N5—C4119.9 (2)C16—C17—C18122.7 (3)
C6—N5—S1120.68 (16)C16—C17—H17118.7
C4—N5—S1119.08 (17)C18—C17—H17118.7
C7—C6—C11120.9 (2)C19—C18—C17117.2 (3)
C7—C6—N5119.2 (2)C19—C18—C21121.9 (3)
C11—C6—N5119.8 (2)C17—C18—C21120.9 (3)
C6—C7—C8120.0 (3)C18—C19—C20121.5 (3)
C6—C7—H7120.0C18—C19—H19119.3
C8—C7—H7120.0C20—C19—H19119.3
C9—C8—C7119.6 (3)C15—C20—C19120.0 (3)
C9—C8—H8120.2C15—C20—H20120.0
C7—C8—H8120.2C19—C20—H20120.0
C8—C9—C10121.0 (3)C18—C21—H21A109.5
C8—C9—H9119.5C18—C21—H21B109.5
C10—C9—H9119.5H21A—C21—H21B109.5
C9—C10—C11120.8 (3)C18—C21—H21C109.5
C9—C10—H10119.6H21A—C21—H21C109.5
C11—C10—H10119.6H21B—C21—H21C109.5
C11—N1—C2—C12−95.9 (3)C8—C9—C10—C111.7 (4)
C11—N1—C2—C13145.9 (2)C2—N1—C11—C10123.8 (3)
C11—N1—C2—C322.4 (3)C2—N1—C11—C6−62.0 (3)
N1—C2—C3—C461.1 (3)C9—C10—C11—N1175.7 (2)
C12—C2—C3—C4−179.4 (2)C9—C10—C11—C61.3 (4)
C13—C2—C3—C4−59.8 (3)C7—C6—C11—N1−178.1 (2)
C2—C3—C4—N5−57.2 (3)N5—C6—C11—N1−0.7 (3)
C2—C3—C4—C14−179.3 (2)C7—C6—C11—C10−3.7 (3)
C3—C4—N5—C6−27.7 (3)N5—C6—C11—C10173.7 (2)
C14—C4—N5—C693.9 (3)O2—S1—C15—C20−1.4 (3)
C3—C4—N5—S1145.32 (18)O1—S1—C15—C20−130.5 (2)
C14—C4—N5—S1−93.1 (3)N5—S1—C15—C20114.2 (2)
O2—S1—N5—C6−146.99 (18)O2—S1—C15—C16177.6 (2)
O1—S1—N5—C6−17.3 (2)O1—S1—C15—C1648.5 (2)
C15—S1—N5—C698.24 (18)N5—S1—C15—C16−66.8 (2)
O2—S1—N5—C440.06 (19)C20—C15—C16—C17−1.0 (4)
O1—S1—N5—C4169.70 (18)S1—C15—C16—C17−180.0 (2)
C15—S1—N5—C4−74.71 (19)C15—C16—C17—C18−0.1 (4)
C4—N5—C6—C7−116.8 (2)C16—C17—C18—C191.0 (4)
S1—N5—C6—C770.3 (3)C16—C17—C18—C21−178.9 (3)
C4—N5—C6—C1165.7 (3)C17—C18—C19—C20−0.8 (5)
S1—N5—C6—C11−107.2 (2)C21—C18—C19—C20179.1 (3)
C11—C6—C7—C83.2 (4)C16—C15—C20—C191.2 (4)
N5—C6—C7—C8−174.3 (2)S1—C15—C20—C19−179.8 (2)
C6—C7—C8—C9−0.1 (4)C18—C19—C20—C15−0.3 (5)
C7—C8—C9—C10−2.3 (5)
D—H···AD—HH···AD···AD—H···A
C20—H20···O20.932.512.885 (4)105
N1—H1···O2i0.75 (3)2.52 (3)3.268 (3)176 (3)
C14—H14B···O1ii0.962.583.436 (4)149
C13—H13A···Cg20.962.903.7592 (31)150
C19—H19···Cg2i0.932.903.5192 (34)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C20—H20⋯O20.932.512.885 (4)105
N1—H1⋯O2i0.75 (3)2.52 (3)3.268 (3)176 (3)
C14—H14B⋯O1ii0.962.583.436 (4)149
C13—H13ACg20.962.903.7592 (31)150
C19—H19⋯Cg2i0.932.903.5192 (34)126

Symmetry codes: (i) ; (ii) . Cg2 is the centroid of the = C15–C20 ring.

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