Literature DB >> 21577829

5-Chloro-acetyl-4-methyl-2,3,4,5-tetra-hydro-1H-1,5-benzodiazepin-2-one.

K Ravichandran, P Sakthivel, S Ponnuswamy, P Ramesh, M N Ponnuswamy.   

Abstract

In the title compound, C(12)H(13)ClN(2)O(2), the benzodiazepine ring adopts a distorted boat conformation. The carbonyl O atom and the Cl atom of the chloro-acetyl group are in a cis conformation. The crystal packing is controlled by inter-molecular C-H⋯O and N-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21577829      PMCID: PMC2970477          DOI: 10.1107/S1600536809034813

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶). For the use of benzodiazepines in the treatment of gastrointestinal and central nervous system disorders, see: Rahbaek et al. (1999 ▶).

Experimental

Crystal data

C12H13ClN2O2 M = 252.69 Monoclinic, a = 16.7656 (4) Å b = 8.8171 (2) Å c = 17.0125 (4) Å β = 105.803 (1)° V = 2419.80 (10) Å3 Z = 8 Mo Kα radiation μ = 0.31 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.912, T max = 0.940 17051 measured reflections 4087 independent reflections 2835 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.128 S = 1.02 4087 reflections 159 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034813/bt5035sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034813/bt5035Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13ClN2O2F(000) = 1056
Mr = 252.69Dx = 1.387 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3025 reflections
a = 16.7656 (4) Åθ = 2.5–31.7°
b = 8.8171 (2) ŵ = 0.31 mm1
c = 17.0125 (4) ÅT = 293 K
β = 105.803 (1)°Block, colourless
V = 2419.80 (10) Å30.30 × 0.25 × 0.20 mm
Z = 8
Bruker Kappa APEXII area-detector diffractometer4087 independent reflections
Radiation source: fine-focus sealed tube2835 reflections with I > 2σ(I)
graphiteRint = 0.026
ω and φ scansθmax = 31.7°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −24→24
Tmin = 0.912, Tmax = 0.940k = −13→12
17051 measured reflectionsl = −25→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0588P)2 + 0.9172P] where P = (Fo2 + 2Fc2)/3
4087 reflections(Δ/σ)max = 0.001
159 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.44292 (4)−0.22883 (6)0.84052 (3)0.07928 (19)
O10.40338 (7)−0.08925 (12)0.45164 (6)0.0519 (3)
O20.31233 (7)−0.25824 (11)0.68948 (6)0.0512 (3)
N10.42899 (7)0.08091 (13)0.55371 (7)0.0417 (2)
H10.4810 (11)0.0878 (19)0.5523 (10)0.052 (4)*
C20.37704 (8)−0.00571 (15)0.49681 (7)0.0406 (3)
C30.28614 (8)0.00659 (16)0.48988 (8)0.0422 (3)
H3A0.2551−0.03820.43860.051*
H3B0.27110.11290.48900.051*
C40.26188 (8)−0.07178 (15)0.55987 (8)0.0413 (3)
H40.2691−0.18120.55430.050*
N50.31771 (7)−0.02397 (11)0.63873 (6)0.0373 (2)
C60.34684 (8)0.12893 (13)0.64881 (7)0.0361 (2)
C70.31913 (9)0.22890 (15)0.69873 (8)0.0439 (3)
H70.27900.19820.72380.053*
C80.35122 (10)0.37389 (16)0.71114 (9)0.0497 (3)
H80.33280.44060.74470.060*
C90.41025 (10)0.41982 (16)0.67405 (9)0.0503 (3)
H90.43270.51670.68370.060*
C100.43651 (9)0.32312 (16)0.62248 (9)0.0452 (3)
H100.47630.35520.59730.054*
C110.40373 (7)0.17797 (14)0.60811 (7)0.0364 (2)
C120.17216 (10)−0.0438 (2)0.55670 (11)0.0639 (4)
H12A0.1588−0.09710.60070.096*
H12B0.1373−0.07940.50550.096*
H12C0.16340.06290.56190.096*
C130.33861 (8)−0.12933 (14)0.69903 (7)0.0377 (3)
C140.39552 (10)−0.07538 (17)0.77936 (8)0.0502 (3)
H14A0.3639−0.01650.80850.060*
H14B0.4379−0.01000.76870.060*
U11U22U33U12U13U23
Cl10.1088 (4)0.0608 (3)0.0534 (3)0.0146 (2)−0.0032 (2)0.00910 (19)
O10.0638 (6)0.0553 (6)0.0420 (5)−0.0034 (5)0.0236 (5)−0.0139 (4)
O20.0711 (7)0.0363 (5)0.0469 (6)−0.0094 (4)0.0173 (5)0.0016 (4)
N10.0455 (6)0.0460 (6)0.0362 (5)−0.0005 (5)0.0157 (4)−0.0071 (4)
C20.0535 (7)0.0411 (6)0.0296 (6)0.0012 (5)0.0157 (5)0.0000 (5)
C30.0510 (7)0.0443 (7)0.0297 (6)0.0010 (5)0.0084 (5)−0.0011 (5)
C40.0514 (7)0.0388 (6)0.0329 (6)−0.0055 (5)0.0101 (5)−0.0041 (5)
N50.0521 (6)0.0314 (5)0.0300 (5)−0.0039 (4)0.0139 (4)−0.0040 (4)
C60.0473 (6)0.0300 (5)0.0317 (5)0.0003 (4)0.0121 (5)−0.0033 (4)
C70.0547 (7)0.0401 (7)0.0403 (7)0.0036 (5)0.0189 (6)−0.0069 (5)
C80.0658 (9)0.0368 (7)0.0450 (7)0.0071 (6)0.0123 (6)−0.0112 (5)
C90.0611 (8)0.0322 (6)0.0517 (8)−0.0038 (6)0.0050 (6)−0.0069 (6)
C100.0495 (7)0.0398 (7)0.0459 (7)−0.0057 (5)0.0122 (6)−0.0007 (5)
C110.0430 (6)0.0339 (6)0.0315 (5)0.0020 (5)0.0090 (5)−0.0024 (4)
C120.0541 (9)0.0832 (12)0.0549 (9)−0.0114 (8)0.0160 (7)0.0011 (8)
C130.0491 (6)0.0354 (6)0.0335 (6)−0.0010 (5)0.0195 (5)−0.0014 (4)
C140.0695 (9)0.0445 (7)0.0346 (6)−0.0015 (6)0.0108 (6)0.0016 (5)
Cl1—C141.7591 (15)C6—C111.3913 (17)
O1—C21.2299 (15)C7—C81.3808 (19)
O2—C131.2138 (15)C7—H70.9300
N1—C21.3490 (17)C8—C91.372 (2)
N1—C111.4077 (15)C8—H80.9300
N1—H10.881 (18)C9—C101.379 (2)
C2—C31.5002 (19)C9—H90.9300
C3—C41.5247 (18)C10—C111.3880 (18)
C3—H3A0.9700C10—H100.9300
C3—H3B0.9700C12—H12A0.9600
C4—N51.4730 (16)C12—H12B0.9600
C4—C121.511 (2)C12—H12C0.9600
C4—H40.9800C13—C141.5147 (19)
N5—C131.3573 (16)C14—H14A0.9700
N5—C61.4283 (15)C14—H14B0.9700
C6—C71.3888 (16)
C2—N1—C11124.40 (11)C9—C8—C7120.19 (13)
C2—N1—H1118.0 (11)C9—C8—H8119.9
C11—N1—H1116.9 (11)C7—C8—H8119.9
O1—C2—N1121.06 (12)C8—C9—C10120.36 (13)
O1—C2—C3121.61 (12)C8—C9—H9119.8
N1—C2—C3117.32 (11)C10—C9—H9119.8
C2—C3—C4112.78 (11)C9—C10—C11120.17 (13)
C2—C3—H3A109.0C9—C10—H10119.9
C4—C3—H3A109.0C11—C10—H10119.9
C2—C3—H3B109.0C10—C11—C6119.41 (11)
C4—C3—H3B109.0C10—C11—N1120.05 (12)
H3A—C3—H3B107.8C6—C11—N1120.53 (11)
N5—C4—C12111.43 (11)C4—C12—H12A109.5
N5—C4—C3110.07 (10)C4—C12—H12B109.5
C12—C4—C3111.88 (12)H12A—C12—H12B109.5
N5—C4—H4107.8C4—C12—H12C109.5
C12—C4—H4107.8H12A—C12—H12C109.5
C3—C4—H4107.8H12B—C12—H12C109.5
C13—N5—C6123.09 (10)O2—C13—N5122.02 (12)
C13—N5—C4117.50 (10)O2—C13—C14122.09 (12)
C6—N5—C4119.42 (10)N5—C13—C14115.88 (11)
C7—C6—C11119.74 (11)C13—C14—Cl1111.36 (10)
C7—C6—N5120.80 (11)C13—C14—H14A109.4
C11—C6—N5119.46 (10)Cl1—C14—H14A109.4
C8—C7—C6119.98 (13)C13—C14—H14B109.4
C8—C7—H7120.0Cl1—C14—H14B109.4
C6—C7—H7120.0H14A—C14—H14B108.0
C11—N1—C2—O1−179.31 (12)C7—C8—C9—C101.7 (2)
C11—N1—C2—C31.92 (19)C8—C9—C10—C11−0.4 (2)
O1—C2—C3—C4107.11 (14)C9—C10—C11—C6−2.7 (2)
N1—C2—C3—C4−74.12 (15)C9—C10—C11—N1178.28 (13)
C2—C3—C4—N549.39 (14)C7—C6—C11—C104.55 (19)
C2—C3—C4—C12173.86 (12)N5—C6—C11—C10−175.39 (12)
C12—C4—N5—C1391.37 (15)C7—C6—C11—N1−176.42 (12)
C3—C4—N5—C13−143.90 (11)N5—C6—C11—N13.64 (18)
C12—C4—N5—C6−88.25 (14)C2—N1—C11—C10−135.90 (14)
C3—C4—N5—C636.49 (15)C2—N1—C11—C645.08 (18)
C13—N5—C6—C7−69.95 (17)C6—N5—C13—O2179.08 (12)
C4—N5—C6—C7109.65 (14)C4—N5—C13—O2−0.52 (18)
C13—N5—C6—C11110.00 (14)C6—N5—C13—C140.10 (18)
C4—N5—C6—C11−70.41 (16)C4—N5—C13—C14−179.51 (11)
C11—C6—C7—C8−3.4 (2)O2—C13—C14—Cl119.10 (18)
N5—C6—C7—C8176.59 (13)N5—C13—C14—Cl1−161.92 (10)
C6—C7—C8—C90.2 (2)
D—H···AD—HH···AD···AD—H···A
C4—H4···O20.982.322.6952 (17)102
N1—H1···O1i0.881 (18)1.958 (18)2.8375 (16)176.4 (16)
C7—H7···O2ii0.932.433.2818 (17)153
C14—H14A···O1iii0.972.523.2411 (18)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O20.982.322.6952 (17)102
N1—H1⋯O1i0.881 (18)1.958 (18)2.8375 (16)176.4 (16)
C7—H7⋯O2ii0.932.433.2818 (17)153
C14—H14A⋯O1iii0.972.523.2411 (18)131

Symmetry codes: (i) ; (ii) ; (iii) .

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