Literature DB >> 21577820

(E)-Ethyl 2-cyano-3-(3,4-dihydr-oxy-5-nitro-phen-yl)acrylate.

Shi-Jie Zhang, Xian-Ming Zheng, Wei-Xiao Hu.   

Abstract

The title compound, C(12)H(10)N(2)O(6), was synthesized via a Knoevenagel condensation and crystallized from ethanol. In the crystal, strong classical inter-molecular O-H⋯O hydrogen bonds and weak C-H⋯N contacts link the mol-ecules into ribbons extending along [010]. Intra-molecular O-H⋯O and C-H⋯N contacts support the planar conformation of the mol-ecules (mean deivation 0.0270 Å).

Entities:  

Year:  2009        PMID: 21577820      PMCID: PMC2970386          DOI: 10.1107/S1600536809035132

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses of some potent and selective catechol O-methyl­transferase inhibitors, see: Bäckström et al. (1989 ▶). For structure–activity relationships of catechol O-methyl­transferase inhibitors, see: Tervo et al. (2003 ▶). For Entacapone-related crystal structures, see: Zheng et al. (2007 ▶). For the synthesis and anti­cancer evaluation of E-2-cyano-(3-substituted phen­yl)acyl­amides, see: Zhou et al. (2009 ▶).

Experimental

Crystal data

C12H10N2O6 M = 278.22 Monoclinic, a = 24.983 (9) Å b = 13.485 (5) Å c = 7.312 (3) Å β = 105.911 (4)° V = 2369.0 (16) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 93 K 0.40 × 0.20 × 0.10 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer Absorption correction: none 9288 measured reflections 2714 independent reflections 2134 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.118 S = 1.00 2714 reflections 190 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809035132/si2196sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035132/si2196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N2O6F(000) = 1152
Mr = 278.22Dx = 1.560 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3450 reflections
a = 24.983 (9) Åθ = 3.0–27.5°
b = 13.485 (5) ŵ = 0.13 mm1
c = 7.312 (3) ÅT = 93 K
β = 105.911 (4)°Prism, yellow
V = 2369.0 (16) Å30.40 × 0.20 × 0.10 mm
Z = 8
Rigaku AFC10/Saturn724+ diffractometer2134 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.042
graphiteθmax = 27.6°, θmin = 3.0°
Detector resolution: 28.5714 pixels mm-1h = −28→32
multi–scank = −17→17
9288 measured reflectionsl = −9→6
2714 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0596P)2 + 0.69P] where P = (Fo2 + 2Fc2)/3
2714 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.39296 (5)0.60992 (8)0.12800 (18)0.0219 (3)
O20.45623 (5)0.47578 (9)0.04941 (17)0.0222 (3)
O30.47644 (5)0.28865 (9)0.03118 (18)0.0269 (3)
O40.41766 (5)0.17833 (9)0.07290 (19)0.0292 (3)
O50.13633 (5)0.39925 (8)0.35194 (16)0.0196 (3)
O60.17659 (5)0.25177 (9)0.32497 (17)0.0251 (3)
N10.20946 (6)0.59192 (11)0.2676 (2)0.0237 (3)
N20.43188 (6)0.26508 (11)0.0670 (2)0.0222 (3)
C10.32709 (7)0.48910 (12)0.1768 (2)0.0179 (4)
H10.30330.53910.20230.022*
C20.37531 (7)0.51576 (12)0.1344 (2)0.0174 (4)
C30.41109 (7)0.44238 (13)0.0937 (2)0.0180 (4)
C40.39609 (7)0.34321 (12)0.1026 (2)0.0178 (4)
C50.34721 (7)0.31586 (12)0.1455 (2)0.0189 (4)
H50.33790.24770.14890.023*
C60.31215 (7)0.38778 (12)0.1831 (2)0.0177 (4)
C70.26290 (7)0.35205 (12)0.2309 (2)0.0186 (4)
H70.26010.28190.23520.022*
C80.22018 (7)0.40137 (12)0.2704 (2)0.0182 (4)
C90.17571 (7)0.34244 (12)0.3181 (2)0.0188 (4)
C100.21410 (7)0.50688 (13)0.2690 (2)0.0189 (4)
C110.09158 (7)0.34963 (13)0.4102 (2)0.0216 (4)
H11A0.10720.30130.51290.026*
H11B0.06680.31380.30130.026*
C120.05971 (7)0.42919 (13)0.4796 (3)0.0248 (4)
H12A0.08400.46090.59270.030*
H12B0.02760.39950.51190.030*
H12C0.04670.47890.37950.030*
H2O0.4735 (10)0.4161 (19)0.024 (3)0.055 (7)*
H1O0.3692 (11)0.659 (2)0.139 (3)0.063 (8)*
U11U22U33U12U13U23
O10.0197 (6)0.0149 (6)0.0348 (7)−0.0012 (5)0.0136 (5)0.0001 (5)
O20.0176 (6)0.0218 (7)0.0314 (7)−0.0007 (5)0.0138 (5)0.0004 (5)
O30.0211 (7)0.0268 (7)0.0379 (7)0.0035 (5)0.0169 (6)0.0005 (6)
O40.0312 (7)0.0163 (6)0.0449 (8)0.0022 (5)0.0184 (6)−0.0011 (5)
O50.0177 (6)0.0184 (6)0.0259 (6)−0.0003 (5)0.0115 (5)0.0015 (5)
O60.0243 (7)0.0172 (6)0.0395 (8)−0.0008 (5)0.0183 (6)0.0000 (5)
N10.0206 (8)0.0207 (8)0.0323 (8)0.0006 (6)0.0117 (6)0.0001 (6)
N20.0214 (8)0.0199 (7)0.0268 (8)0.0047 (6)0.0094 (6)−0.0005 (6)
C10.0162 (8)0.0175 (8)0.0215 (8)0.0014 (6)0.0076 (7)−0.0003 (6)
C20.0180 (9)0.0144 (8)0.0206 (8)0.0010 (6)0.0067 (7)0.0008 (6)
C30.0154 (8)0.0203 (8)0.0195 (8)0.0004 (6)0.0068 (7)0.0000 (6)
C40.0173 (8)0.0164 (8)0.0208 (8)0.0039 (6)0.0069 (7)−0.0003 (6)
C50.0192 (8)0.0176 (8)0.0211 (8)−0.0004 (7)0.0074 (7)−0.0004 (6)
C60.0169 (8)0.0176 (8)0.0198 (8)−0.0014 (6)0.0070 (7)−0.0004 (6)
C70.0204 (9)0.0157 (8)0.0211 (8)−0.0019 (6)0.0081 (7)0.0003 (6)
C80.0188 (8)0.0170 (8)0.0202 (8)−0.0005 (6)0.0076 (7)−0.0003 (6)
C90.0183 (9)0.0193 (8)0.0206 (8)−0.0007 (7)0.0085 (7)−0.0013 (7)
C100.0146 (8)0.0216 (9)0.0223 (8)−0.0013 (7)0.0082 (7)−0.0005 (7)
C110.0194 (9)0.0221 (9)0.0274 (9)−0.0044 (7)0.0133 (7)−0.0010 (7)
C120.0224 (10)0.0227 (9)0.0346 (10)−0.0005 (7)0.0167 (8)−0.0016 (7)
O1—C21.3491 (19)C3—C41.395 (2)
O1—H1O0.90 (3)C4—C51.391 (2)
O2—C31.334 (2)C5—C61.384 (2)
O2—H2O0.95 (3)C5—H50.9500
O3—N21.2528 (19)C6—C71.450 (2)
O4—N21.2266 (19)C7—C81.354 (2)
O5—C91.322 (2)C7—H70.9500
O5—C111.463 (2)C8—C101.431 (2)
O6—C91.224 (2)C8—C91.484 (2)
N1—C101.152 (2)C11—C121.505 (2)
N2—C41.451 (2)C11—H11A0.9900
C1—C21.372 (2)C11—H11B0.9900
C1—C61.420 (2)C12—H12A0.9800
C1—H10.9500C12—H12B0.9800
C2—C31.419 (2)C12—H12C0.9800
C2—O1—H1O117.0 (17)C1—C6—C7125.12 (15)
C3—O2—H2O102.7 (15)C8—C7—C6131.17 (16)
C9—O5—C11117.16 (13)C8—C7—H7114.4
O4—N2—O3122.12 (14)C6—C7—H7114.4
O4—N2—C4119.20 (15)C7—C8—C10125.13 (15)
O3—N2—C4118.68 (14)C7—C8—C9118.16 (16)
C2—C1—C6120.95 (15)C10—C8—C9116.71 (15)
C2—C1—H1119.5O6—C9—O5125.26 (15)
C6—C1—H1119.5O6—C9—C8122.58 (15)
O1—C2—C1124.76 (15)O5—C9—C8112.16 (15)
O1—C2—C3114.74 (15)N1—C10—C8179.64 (18)
C1—C2—C3120.49 (15)O5—C11—C12106.83 (14)
O2—C3—C4126.20 (15)O5—C11—H11A110.4
O2—C3—C2116.01 (15)C12—C11—H11A110.4
C4—C3—C2117.79 (15)O5—C11—H11B110.4
C5—C4—C3121.88 (15)C12—C11—H11B110.4
C5—C4—N2118.04 (15)H11A—C11—H11B108.6
C3—C4—N2120.08 (15)C11—C12—H12A109.5
C6—C5—C4120.10 (15)C11—C12—H12B109.5
C6—C5—H5119.9H12A—C12—H12B109.5
C4—C5—H5119.9C11—C12—H12C109.5
C5—C6—C1118.76 (15)H12A—C12—H12C109.5
C5—C6—C7116.10 (15)H12B—C12—H12C109.5
C6—C1—C2—O1−179.03 (15)C4—C5—C6—C10.1 (2)
C6—C1—C2—C30.7 (2)C4—C5—C6—C7−178.53 (15)
O1—C2—C3—O2−1.9 (2)C2—C1—C6—C50.0 (2)
C1—C2—C3—O2178.35 (14)C2—C1—C6—C7178.44 (15)
O1—C2—C3—C4178.37 (14)C5—C6—C7—C8−178.25 (17)
C1—C2—C3—C4−1.4 (2)C1—C6—C7—C83.3 (3)
O2—C3—C4—C5−178.26 (15)C6—C7—C8—C101.4 (3)
C2—C3—C4—C51.4 (2)C6—C7—C8—C9−178.89 (16)
O2—C3—C4—N21.8 (3)C11—O5—C9—O62.8 (2)
C2—C3—C4—N2−178.46 (14)C11—O5—C9—C8−176.96 (13)
O4—N2—C4—C51.1 (2)C7—C8—C9—O60.8 (3)
O3—N2—C4—C5−178.91 (14)C10—C8—C9—O6−179.52 (16)
O4—N2—C4—C3−179.01 (15)C7—C8—C9—O5−179.44 (14)
O3—N2—C4—C31.0 (2)C10—C8—C9—O50.3 (2)
C3—C4—C5—C6−0.8 (2)C9—O5—C11—C12168.12 (14)
N2—C4—C5—C6179.10 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O6i0.91 (3)1.76 (3)2.6692 (18)176 (2)
C5—H5···N1ii0.952.573.467 (3)159
O2—H2O···O30.96 (3)1.72 (3)2.584 (2)149 (2)
C1—H1···N10.952.623.474 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O6i0.91 (3)1.76 (3)2.6692 (18)176 (2)
C5—H5⋯N1ii0.952.573.467 (3)159
O2—H2O⋯O30.96 (3)1.72 (3)2.584 (2)149 (2)
C1—H1⋯N10.952.623.474 (3)150

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of some novel potent and selective catechol O-methyltransferase inhibitors.

Authors:  R Bäckström; E Honkanen; A Pippuri; P Kairisalo; J Pystynen; K Heinola; E Nissinen; I B Linden; P T Männistö; S Kaakkola
Journal:  J Med Chem       Date:  1989-04       Impact factor: 7.446

3.  The synthesis and biological evaluation of some caffeic acid amide derivatives: E-2-cyano-(3-substituted phenyl)acrylamides.

Authors:  Wei Zhou; Hai-bo Li; Chun-nian Xia; Xian-ming Zheng; Wei-xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2009-02-25       Impact factor: 2.823

4.  A structure-activity relationship study of catechol-O-methyltransferase inhibitors combining molecular docking and 3D QSAR methods.

Authors:  Anu J Tervo; Tommi H Nyrönen; Toni Rönkkö; Antti Poso
Journal:  J Comput Aided Mol Des       Date:  2003-12       Impact factor: 3.686

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  (E)-Ethyl 2-cyano-3-[5-nitro-2-(pyrrolidin-1-yl)phen-yl]acrylate.

Authors:  Yapi Marcellin Yapo; Bakary Coulibaly Abou; Ané Adjou; Rita Kakou-Yao; Jules A Tenon
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

2.  (E)-Ethyl 2-cyano-3-(furan-2-yl)acrylate.

Authors:  Rajesh G Kalkhambkar; D Gayathri; Vivek K Gupta; Rajni Kant; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

3.  (E)-Ethyl 2-cyano-3-(1H-pyrrol-2-yl)acrylate.

Authors:  Haldorai Yuvaraj; D Gayathri; Rajesh G Kalkhambkar; Vivek K Gupta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23
  3 in total

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