Literature DB >> 21577804

1,10-Phenanthrolin-1-ium 2-carb-oxy-4,5-dichloro-benzoate.

Graham Smith, Urs D Wermuth, Jonathan M White.   

Abstract

In the structure of the 1:1 proton-transfer compound of 1,10-phenanthroline with 4,5-dichloro-phthalic acid, C(12)H(9)N(2) (+)·C(8)H(3)Cl(2)O(4) (-), determined at 130 K, the 1,10-phenanthrolinium cation and the hydrogen 4,5-dichloro-phthalate anion associate through a single N-H⋯O(carbox-yl) hydrogen bond giving discrete units which have no extension except through a number of weak cation C-H⋯O(anion) associations and weak cation-anion aromatic ring π-π inter-actions [minimum centroid-centroid separation = 3.6815 (12) Å]. The anions are essentially planar "[maximum deviation 0.214 (1) Å (a carboxyl O)] with the syn-related H atom of the carboxyl group, forming a short intra-molecular O-H⋯O(carbox-yl) hydrogen bond.

Entities:  

Year:  2009        PMID: 21577804      PMCID: PMC2970357          DOI: 10.1107/S1600536809034448

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of other hydrogen 4,5-dichloro­phthalate salts, see: Mallinson et al. (2003 ▶); Bozkurt et al. (2006 ▶); Smith et al. (2007 ▶, 2008a ▶,b ▶, 2009a ▶,b ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C12H9N2 +·C8H3Cl2O4 M = 415.22 Monoclinic, a = 6.4598 (11) Å b = 7.3696 (12) Å c = 18.302 (3) Å β = 94.978 (3)° V = 868.0 (2) Å3 Z = 2 Mo Kα radiation μ = 0.41 mm−1 T = 130 K 0.55 × 0.45 × 0.05 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.81, T max = 0.98 5464 measured reflections 3734 independent reflections 3629 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.085 S = 1.04 3734 reflections 261 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 1564 Friedel pairs Flack parameter: 0.00 (4) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034448/fl2261sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034448/fl2261Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9N2+·C8H3Cl2O4F(000) = 424
Mr = 415.22Dx = 1.589 Mg m3
Monoclinic, P21Melting point = 464–465 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 6.4598 (11) ÅCell parameters from 3630 reflections
b = 7.3696 (12) Åθ = 2.2–27.5°
c = 18.302 (3) ŵ = 0.41 mm1
β = 94.978 (3)°T = 130 K
V = 868.0 (2) Å3Plate, colourless
Z = 20.55 × 0.45 × 0.05 mm
Bruker SMART CCD area-detector diffractometer3734 independent reflections
Radiation source: sealed tube3629 reflections with I > 2σ(I)
graphiteRint = 0.017
φ and ω scansθmax = 27.6°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −5→8
Tmin = 0.81, Tmax = 0.98k = −9→9
5464 measured reflectionsl = −23→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.085w = 1/[σ2(Fo2) + (0.053P)2 + 0.0522P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3734 reflectionsΔρmax = 0.30 e Å3
261 parametersΔρmin = −0.19 e Å3
1 restraintAbsolute structure: Flack (1983), 1564 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (4)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1A0.4667 (2)0.7304 (2)0.14863 (8)0.0192 (4)
N10A0.4177 (2)0.7715 (2)0.29542 (8)0.0212 (4)
C2A0.5046 (3)0.7149 (3)0.07881 (10)0.0232 (5)
C3A0.3645 (3)0.7828 (3)0.02322 (10)0.0277 (5)
C4A0.1845 (3)0.8641 (3)0.04213 (10)0.0268 (5)
C5A−0.0459 (3)0.9562 (3)0.13825 (11)0.0233 (5)
C6A−0.0804 (3)0.9634 (2)0.20961 (11)0.0246 (5)
C7A0.0442 (3)0.9113 (2)0.34093 (10)0.0259 (6)
C8A0.2013 (3)0.8540 (3)0.39058 (10)0.0286 (5)
C9A0.3857 (3)0.7854 (3)0.36523 (10)0.0253 (5)
C11A0.2617 (3)0.8274 (2)0.24641 (9)0.0184 (4)
C12A0.2916 (3)0.8115 (2)0.16952 (10)0.0178 (4)
C13A0.1421 (3)0.8783 (2)0.11565 (10)0.0207 (4)
C14A0.0717 (3)0.9002 (2)0.26564 (10)0.0207 (5)
Cl41.15820 (7)0.37080 (8)0.46649 (2)0.0332 (1)
Cl51.59276 (7)0.22144 (8)0.42219 (2)0.0316 (1)
O111.5052 (2)0.18688 (18)0.14604 (7)0.0251 (4)
O121.2404 (2)0.34157 (19)0.09355 (7)0.0265 (4)
O210.9277 (2)0.4836 (2)0.12771 (7)0.0271 (4)
O220.76248 (19)0.53666 (18)0.22655 (7)0.0254 (4)
C11.2820 (3)0.3211 (2)0.22748 (9)0.0179 (5)
C21.0928 (3)0.3971 (2)0.24707 (9)0.0178 (4)
C31.0603 (3)0.4092 (2)0.32117 (10)0.0206 (5)
C41.2096 (3)0.3536 (3)0.37559 (9)0.0215 (5)
C51.3983 (3)0.2862 (2)0.35636 (10)0.0207 (5)
C61.4314 (3)0.2693 (2)0.28333 (10)0.0196 (4)
C111.3502 (3)0.2788 (2)0.15083 (9)0.0195 (5)
C210.9127 (3)0.4764 (2)0.19673 (9)0.0193 (4)
H1A0.556 (3)0.683 (3)0.1842 (12)0.021 (5)*
H2A0.625800.658400.066800.0280*
H3A0.391900.77330−0.025700.0330*
H4A0.090100.910300.005600.0320*
H5A−0.144901.002100.103100.0280*
H6A−0.205401.010400.222900.0300*
H7A−0.078600.956700.356700.0310*
H8A0.186500.860300.440600.0340*
H9A0.490800.747800.399800.0300*
H30.935200.455800.334500.0250*
H61.557000.222000.270800.0230*
H121.113 (5)0.400 (4)0.1072 (17)0.035 (9)*
U11U22U33U12U13U23
N1A0.0167 (6)0.0212 (7)0.0195 (7)−0.0015 (6)0.0013 (5)0.0001 (6)
N10A0.0217 (7)0.0224 (7)0.0193 (7)0.0012 (6)0.0005 (6)−0.0004 (6)
C2A0.0222 (8)0.0261 (8)0.0222 (8)−0.0047 (8)0.0078 (7)−0.0028 (7)
C3A0.0292 (10)0.0360 (10)0.0182 (8)−0.0077 (8)0.0036 (7)0.0005 (7)
C4A0.0268 (9)0.0298 (9)0.0230 (8)−0.0069 (8)−0.0029 (7)0.0060 (8)
C5A0.0176 (8)0.0211 (8)0.0302 (9)−0.0004 (7)−0.0040 (7)0.0041 (7)
C6A0.0164 (8)0.0202 (9)0.0375 (10)0.0014 (7)0.0033 (7)−0.0017 (8)
C7A0.0242 (9)0.0253 (10)0.0295 (10)0.0011 (8)0.0104 (7)−0.0027 (7)
C8A0.0358 (10)0.0308 (10)0.0203 (8)0.0001 (9)0.0096 (7)−0.0023 (8)
C9A0.0295 (9)0.0263 (9)0.0197 (8)0.0025 (8)−0.0007 (7)0.0020 (7)
C11A0.0182 (8)0.0164 (7)0.0207 (8)−0.0009 (6)0.0026 (6)0.0009 (6)
C12A0.0163 (7)0.0166 (7)0.0204 (8)−0.0040 (6)0.0005 (6)0.0001 (6)
C13A0.0186 (7)0.0188 (7)0.0241 (8)−0.0039 (7)−0.0020 (6)0.0027 (7)
C14A0.0195 (8)0.0181 (8)0.0248 (8)−0.0031 (7)0.0039 (6)−0.0021 (7)
Cl40.0291 (2)0.0541 (3)0.0169 (2)0.0014 (2)0.0045 (2)−0.0034 (2)
Cl50.0251 (2)0.0463 (3)0.0221 (2)0.0067 (2)−0.0046 (2)−0.0001 (2)
O110.0227 (6)0.0297 (7)0.0236 (6)0.0044 (6)0.0058 (5)−0.0029 (5)
O120.0260 (6)0.0354 (7)0.0187 (6)0.0056 (6)0.0052 (5)0.0018 (5)
O210.0264 (7)0.0343 (7)0.0204 (6)0.0068 (6)0.0009 (5)0.0030 (5)
O220.0200 (6)0.0284 (7)0.0277 (7)0.0044 (5)0.0023 (5)0.0012 (5)
C10.0189 (8)0.0157 (8)0.0192 (8)−0.0027 (6)0.0029 (6)0.0006 (6)
C20.0188 (8)0.0149 (7)0.0197 (8)−0.0012 (6)0.0024 (6)0.0007 (6)
C30.0189 (8)0.0215 (9)0.0215 (8)−0.0012 (7)0.0032 (7)−0.0034 (6)
C40.0229 (8)0.0263 (9)0.0161 (7)−0.0035 (7)0.0057 (6)−0.0019 (7)
C50.0188 (8)0.0231 (8)0.0196 (8)−0.0005 (7)−0.0019 (6)0.0019 (7)
C60.0155 (7)0.0207 (8)0.0229 (8)0.0010 (6)0.0040 (6)−0.0014 (7)
C110.0202 (8)0.0197 (8)0.0192 (8)−0.0041 (7)0.0055 (6)−0.0012 (6)
C210.0168 (7)0.0173 (8)0.0233 (8)−0.0023 (6)−0.0005 (6)−0.0004 (6)
Cl4—C41.7291 (17)C11A—C12A1.442 (2)
Cl5—C51.7305 (19)C11A—C14A1.412 (3)
O11—C111.218 (2)C12A—C13A1.408 (3)
O12—C111.299 (2)C2A—H2A0.9300
O21—C211.276 (2)C3A—H3A0.9300
O22—C211.236 (2)C4A—H4A0.9300
O12—H120.98 (3)C5A—H5A0.9300
N1A—C12A1.363 (2)C6A—H6A0.9300
N1A—C2A1.327 (2)C7A—H7A0.9300
N10A—C11A1.354 (2)C8A—H8A0.9300
N10A—C9A1.316 (2)C9A—H9A0.9300
N1A—H1A0.90 (2)C1—C21.419 (3)
C2A—C3A1.395 (3)C1—C111.538 (2)
C3A—C4A1.379 (3)C1—C61.397 (3)
C4A—C13A1.400 (3)C2—C211.536 (3)
C5A—C6A1.345 (3)C2—C31.393 (2)
C5A—C13A1.436 (3)C3—C41.387 (3)
C6A—C14A1.435 (3)C4—C51.390 (3)
C7A—C14A1.407 (3)C5—C61.377 (3)
C7A—C8A1.369 (3)C3—H30.9300
C8A—C9A1.409 (3)C6—H60.9300
C11—O12—H12111 (2)C14A—C6A—H6A119.00
C2A—N1A—C12A122.34 (16)C5A—C6A—H6A119.00
C9A—N10A—C11A116.68 (15)C8A—C7A—H7A121.00
C12A—N1A—H1A117.5 (13)C14A—C7A—H7A121.00
C2A—N1A—H1A120.1 (13)C9A—C8A—H8A120.00
N1A—C2A—C3A120.63 (18)C7A—C8A—H8A120.00
C2A—C3A—C4A118.74 (17)C8A—C9A—H9A118.00
C3A—C4A—C13A120.89 (17)N10A—C9A—H9A118.00
C6A—C5A—C13A120.73 (18)C2—C1—C11129.18 (16)
C5A—C6A—C14A121.35 (18)C2—C1—C6118.60 (15)
C8A—C7A—C14A118.87 (17)C6—C1—C11112.19 (16)
C7A—C8A—C9A119.43 (17)C1—C2—C21128.55 (15)
N10A—C9A—C8A123.79 (17)C1—C2—C3118.51 (16)
N10A—C11A—C14A124.31 (15)C3—C2—C21112.92 (16)
C12A—C11A—C14A117.85 (16)C2—C3—C4121.74 (17)
N10A—C11A—C12A117.83 (16)Cl4—C4—C5121.05 (14)
C11A—C12A—C13A120.89 (17)C3—C4—C5119.63 (16)
N1A—C12A—C11A119.61 (16)Cl4—C4—C3119.32 (15)
N1A—C12A—C13A119.50 (16)C4—C5—C6119.44 (17)
C5A—C13A—C12A118.94 (17)Cl5—C5—C4121.47 (14)
C4A—C13A—C5A123.19 (17)Cl5—C5—C6119.09 (15)
C4A—C13A—C12A117.87 (17)C1—C6—C5122.00 (17)
C6A—C14A—C7A122.97 (17)O11—C11—C1118.72 (15)
C7A—C14A—C11A116.91 (16)O12—C11—C1118.97 (15)
C6A—C14A—C11A120.09 (16)O11—C11—O12122.32 (16)
C3A—C2A—H2A120.00O22—C21—C2117.04 (15)
N1A—C2A—H2A120.00O21—C21—O22123.49 (17)
C2A—C3A—H3A121.00O21—C21—C2119.41 (16)
C4A—C3A—H3A121.00C2—C3—H3119.00
C3A—C4A—H4A120.00C4—C3—H3119.00
C13A—C4A—H4A120.00C1—C6—H6119.00
C6A—C5A—H5A120.00C5—C6—H6119.00
C13A—C5A—H5A120.00
C12A—N1A—C2A—C3A0.2 (3)N1A—C12A—C13A—C5A177.27 (16)
C2A—N1A—C12A—C11A−178.71 (17)C11A—C12A—C13A—C4A177.79 (16)
C2A—N1A—C12A—C13A1.4 (3)C11A—C12A—C13A—C5A−2.6 (2)
C11A—N10A—C9A—C8A0.0 (3)C6—C1—C2—C3−2.9 (2)
C9A—N10A—C11A—C12A−179.22 (16)C6—C1—C2—C21175.21 (15)
C9A—N10A—C11A—C14A0.8 (2)C11—C1—C2—C3174.90 (15)
N1A—C2A—C3A—C4A−0.9 (3)C11—C1—C2—C21−7.0 (3)
C2A—C3A—C4A—C13A−0.1 (3)C2—C1—C6—C51.5 (2)
C3A—C4A—C13A—C5A−177.89 (19)C11—C1—C6—C5−176.68 (14)
C3A—C4A—C13A—C12A1.7 (3)C2—C1—C11—O11−168.30 (16)
C13A—C5A—C6A—C14A2.4 (3)C2—C1—C11—O1211.4 (3)
C6A—C5A—C13A—C4A178.76 (18)C6—C1—C11—O119.6 (2)
C6A—C5A—C13A—C12A−0.8 (3)C6—C1—C11—O12−170.67 (15)
C5A—C6A—C14A—C7A177.74 (17)C1—C2—C3—C41.7 (2)
C5A—C6A—C14A—C11A−0.5 (2)C21—C2—C3—C4−176.64 (16)
C14A—C7A—C8A—C9A−0.1 (3)C1—C2—C21—O21−2.2 (3)
C8A—C7A—C14A—C6A−177.47 (17)C1—C2—C21—O22−179.53 (16)
C8A—C7A—C14A—C11A0.8 (2)C3—C2—C21—O21175.96 (15)
C7A—C8A—C9A—N10A−0.3 (3)C3—C2—C21—O22−1.4 (2)
N10A—C11A—C12A—N1A4.5 (2)C2—C3—C4—Cl4−179.50 (14)
N10A—C11A—C12A—C13A−175.62 (15)C2—C3—C4—C50.9 (3)
C14A—C11A—C12A—N1A−175.47 (15)Cl4—C4—C5—Cl5−1.6 (2)
C14A—C11A—C12A—C13A4.4 (2)Cl4—C4—C5—C6178.04 (14)
N10A—C11A—C14A—C6A177.13 (15)C3—C4—C5—Cl5178.02 (14)
N10A—C11A—C14A—C7A−1.2 (2)C3—C4—C5—C6−2.4 (3)
C12A—C11A—C14A—C6A−2.9 (2)Cl5—C5—C6—C1−179.20 (12)
C12A—C11A—C14A—C7A178.83 (14)C4—C5—C6—C11.2 (2)
N1A—C12A—C13A—C4A−2.4 (2)
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O220.90 (2)1.83 (2)2.6926 (19)158 (2)
N1A—H1A···N10A0.90 (2)2.38 (2)2.749 (2)104.3 (15)
O12—H12···O210.98 (3)1.43 (3)2.4054 (19)179 (4)
C2A—H2A···O210.932.523.279 (2)140
C3—H3···O220.932.262.647 (2)104
C3A—H3A···O11i0.932.443.355 (2)168
C4A—H4A···O21ii0.932.493.252 (2)139
C6—H6···O110.932.292.668 (2)103
C6A—H6A···O11iii0.932.593.270 (2)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H1A⋯O220.90 (2)1.83 (2)2.6926 (19)158 (2)
N1A—H1A⋯N10A0.90 (2)2.38 (2)2.749 (2)104.3 (15)
O12—H12⋯O210.98 (3)1.43 (3)2.4054 (19)179 (4)
C2A—H2A⋯O210.932.523.279 (2)140
C3—H3⋯O220.932.262.647 (2)104
C3A—H3A⋯O11i0.932.443.355 (2)168
C4A—H4A⋯O21ii0.932.493.252 (2)139
C6—H6⋯O110.932.292.668 (2)103
C6A—H6A⋯O11iii0.932.593.270 (2)130

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  From weak interactions to covalent bonds: a continuum in the complexes of 1,8-bis(dimethylamino)naphthalene.

Authors:  Paul R Mallinson; Garry T Smith; Chick C Wilson; Eugeniusz Grech; Krzysztof Wozniak
Journal:  J Am Chem Soc       Date:  2003-04-09       Impact factor: 15.419

4.  4-Chloro-anilinium 2-carb-oxy-4,5-dichloro-benzoate.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

5.  Zero-, one- and two-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with the monocyclic heteroaromatic Lewis bases 2-aminopyrimidine, nicotinamide and isonicotinamide.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2009-02-21       Impact factor: 1.172

6.  Two- and three-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with the isomeric monoaminobenzoic acids.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2008-08-29       Impact factor: 1.172

7.  One-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with 8-hydroxyquinoline, 8-aminoquinoline and quinoline-2-carboxylic acid (quinaldic acid).

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2008-02-23       Impact factor: 1.172

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  Isopropyl-aminium 2-carb-oxy-4,5-di-chloro-benzoate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.