| Literature DB >> 21577804 |
Graham Smith, Urs D Wermuth, Jonathan M White.
Abstract
In the structure of the 1:1 proton-transfer compound of 1,10-phenanthroline with 4,5-dichloro-phthalic acid, C(12)H(9)N(2) (+)·C(8)H(3)Cl(2)O(4) (-), determined at 130 K, the 1,10-phenanthrolinium cation and the hydrogen 4,5-dichloro-phthalate anion associate through a single N-H⋯O(carbox-yl) hydrogen bond giving discrete units which have no extension except through a number of weak cation C-H⋯O(anion) associations and weak cation-anion aromatic ring π-π inter-actions [minimum centroid-centroid separation = 3.6815 (12) Å]. The anions are essentially planar "[maximum deviation 0.214 (1) Å (a carboxyl O)] with the syn-related H atom of the carboxyl group, forming a short intra-molecular O-H⋯O(carbox-yl) hydrogen bond.Entities:
Year: 2009 PMID: 21577804 PMCID: PMC2970357 DOI: 10.1107/S1600536809034448
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9N2+·C8H3Cl2O4− | |
| Monoclinic, | Melting point = 464–465 K |
| Hall symbol: P 2yb | Mo |
| Cell parameters from 3630 reflections | |
| θ = 2.2–27.5° | |
| µ = 0.41 mm−1 | |
| β = 94.978 (3)° | |
| Plate, colourless | |
| 0.55 × 0.45 × 0.05 mm |
| Bruker SMART CCD area-detector diffractometer | 3734 independent reflections |
| Radiation source: sealed tube | 3629 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.6°, θmin = 1.1° |
| Absorption correction: multi-scan ( | |
| 5464 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3734 reflections | Δρmax = 0.30 e Å−3 |
| 261 parameters | Δρmin = −0.19 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1564 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.00 (4) |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| N1A | 0.4667 (2) | 0.7304 (2) | 0.14863 (8) | 0.0192 (4) | |
| N10A | 0.4177 (2) | 0.7715 (2) | 0.29542 (8) | 0.0212 (4) | |
| C2A | 0.5046 (3) | 0.7149 (3) | 0.07881 (10) | 0.0232 (5) | |
| C3A | 0.3645 (3) | 0.7828 (3) | 0.02322 (10) | 0.0277 (5) | |
| C4A | 0.1845 (3) | 0.8641 (3) | 0.04213 (10) | 0.0268 (5) | |
| C5A | −0.0459 (3) | 0.9562 (3) | 0.13825 (11) | 0.0233 (5) | |
| C6A | −0.0804 (3) | 0.9634 (2) | 0.20961 (11) | 0.0246 (5) | |
| C7A | 0.0442 (3) | 0.9113 (2) | 0.34093 (10) | 0.0259 (6) | |
| C8A | 0.2013 (3) | 0.8540 (3) | 0.39058 (10) | 0.0286 (5) | |
| C9A | 0.3857 (3) | 0.7854 (3) | 0.36523 (10) | 0.0253 (5) | |
| C11A | 0.2617 (3) | 0.8274 (2) | 0.24641 (9) | 0.0184 (4) | |
| C12A | 0.2916 (3) | 0.8115 (2) | 0.16952 (10) | 0.0178 (4) | |
| C13A | 0.1421 (3) | 0.8783 (2) | 0.11565 (10) | 0.0207 (4) | |
| C14A | 0.0717 (3) | 0.9002 (2) | 0.26564 (10) | 0.0207 (5) | |
| Cl4 | 1.15820 (7) | 0.37080 (8) | 0.46649 (2) | 0.0332 (1) | |
| Cl5 | 1.59276 (7) | 0.22144 (8) | 0.42219 (2) | 0.0316 (1) | |
| O11 | 1.5052 (2) | 0.18688 (18) | 0.14604 (7) | 0.0251 (4) | |
| O12 | 1.2404 (2) | 0.34157 (19) | 0.09355 (7) | 0.0265 (4) | |
| O21 | 0.9277 (2) | 0.4836 (2) | 0.12771 (7) | 0.0271 (4) | |
| O22 | 0.76248 (19) | 0.53666 (18) | 0.22655 (7) | 0.0254 (4) | |
| C1 | 1.2820 (3) | 0.3211 (2) | 0.22748 (9) | 0.0179 (5) | |
| C2 | 1.0928 (3) | 0.3971 (2) | 0.24707 (9) | 0.0178 (4) | |
| C3 | 1.0603 (3) | 0.4092 (2) | 0.32117 (10) | 0.0206 (5) | |
| C4 | 1.2096 (3) | 0.3536 (3) | 0.37559 (9) | 0.0215 (5) | |
| C5 | 1.3983 (3) | 0.2862 (2) | 0.35636 (10) | 0.0207 (5) | |
| C6 | 1.4314 (3) | 0.2693 (2) | 0.28333 (10) | 0.0196 (4) | |
| C11 | 1.3502 (3) | 0.2788 (2) | 0.15083 (9) | 0.0195 (5) | |
| C21 | 0.9127 (3) | 0.4764 (2) | 0.19673 (9) | 0.0193 (4) | |
| H1A | 0.556 (3) | 0.683 (3) | 0.1842 (12) | 0.021 (5)* | |
| H2A | 0.62580 | 0.65840 | 0.06680 | 0.0280* | |
| H3A | 0.39190 | 0.77330 | −0.02570 | 0.0330* | |
| H4A | 0.09010 | 0.91030 | 0.00560 | 0.0320* | |
| H5A | −0.14490 | 1.00210 | 0.10310 | 0.0280* | |
| H6A | −0.20540 | 1.01040 | 0.22290 | 0.0300* | |
| H7A | −0.07860 | 0.95670 | 0.35670 | 0.0310* | |
| H8A | 0.18650 | 0.86030 | 0.44060 | 0.0340* | |
| H9A | 0.49080 | 0.74780 | 0.39980 | 0.0300* | |
| H3 | 0.93520 | 0.45580 | 0.33450 | 0.0250* | |
| H6 | 1.55700 | 0.22200 | 0.27080 | 0.0230* | |
| H12 | 1.113 (5) | 0.400 (4) | 0.1072 (17) | 0.035 (9)* |
| N1A | 0.0167 (6) | 0.0212 (7) | 0.0195 (7) | −0.0015 (6) | 0.0013 (5) | 0.0001 (6) |
| N10A | 0.0217 (7) | 0.0224 (7) | 0.0193 (7) | 0.0012 (6) | 0.0005 (6) | −0.0004 (6) |
| C2A | 0.0222 (8) | 0.0261 (8) | 0.0222 (8) | −0.0047 (8) | 0.0078 (7) | −0.0028 (7) |
| C3A | 0.0292 (10) | 0.0360 (10) | 0.0182 (8) | −0.0077 (8) | 0.0036 (7) | 0.0005 (7) |
| C4A | 0.0268 (9) | 0.0298 (9) | 0.0230 (8) | −0.0069 (8) | −0.0029 (7) | 0.0060 (8) |
| C5A | 0.0176 (8) | 0.0211 (8) | 0.0302 (9) | −0.0004 (7) | −0.0040 (7) | 0.0041 (7) |
| C6A | 0.0164 (8) | 0.0202 (9) | 0.0375 (10) | 0.0014 (7) | 0.0033 (7) | −0.0017 (8) |
| C7A | 0.0242 (9) | 0.0253 (10) | 0.0295 (10) | 0.0011 (8) | 0.0104 (7) | −0.0027 (7) |
| C8A | 0.0358 (10) | 0.0308 (10) | 0.0203 (8) | 0.0001 (9) | 0.0096 (7) | −0.0023 (8) |
| C9A | 0.0295 (9) | 0.0263 (9) | 0.0197 (8) | 0.0025 (8) | −0.0007 (7) | 0.0020 (7) |
| C11A | 0.0182 (8) | 0.0164 (7) | 0.0207 (8) | −0.0009 (6) | 0.0026 (6) | 0.0009 (6) |
| C12A | 0.0163 (7) | 0.0166 (7) | 0.0204 (8) | −0.0040 (6) | 0.0005 (6) | 0.0001 (6) |
| C13A | 0.0186 (7) | 0.0188 (7) | 0.0241 (8) | −0.0039 (7) | −0.0020 (6) | 0.0027 (7) |
| C14A | 0.0195 (8) | 0.0181 (8) | 0.0248 (8) | −0.0031 (7) | 0.0039 (6) | −0.0021 (7) |
| Cl4 | 0.0291 (2) | 0.0541 (3) | 0.0169 (2) | 0.0014 (2) | 0.0045 (2) | −0.0034 (2) |
| Cl5 | 0.0251 (2) | 0.0463 (3) | 0.0221 (2) | 0.0067 (2) | −0.0046 (2) | −0.0001 (2) |
| O11 | 0.0227 (6) | 0.0297 (7) | 0.0236 (6) | 0.0044 (6) | 0.0058 (5) | −0.0029 (5) |
| O12 | 0.0260 (6) | 0.0354 (7) | 0.0187 (6) | 0.0056 (6) | 0.0052 (5) | 0.0018 (5) |
| O21 | 0.0264 (7) | 0.0343 (7) | 0.0204 (6) | 0.0068 (6) | 0.0009 (5) | 0.0030 (5) |
| O22 | 0.0200 (6) | 0.0284 (7) | 0.0277 (7) | 0.0044 (5) | 0.0023 (5) | 0.0012 (5) |
| C1 | 0.0189 (8) | 0.0157 (8) | 0.0192 (8) | −0.0027 (6) | 0.0029 (6) | 0.0006 (6) |
| C2 | 0.0188 (8) | 0.0149 (7) | 0.0197 (8) | −0.0012 (6) | 0.0024 (6) | 0.0007 (6) |
| C3 | 0.0189 (8) | 0.0215 (9) | 0.0215 (8) | −0.0012 (7) | 0.0032 (7) | −0.0034 (6) |
| C4 | 0.0229 (8) | 0.0263 (9) | 0.0161 (7) | −0.0035 (7) | 0.0057 (6) | −0.0019 (7) |
| C5 | 0.0188 (8) | 0.0231 (8) | 0.0196 (8) | −0.0005 (7) | −0.0019 (6) | 0.0019 (7) |
| C6 | 0.0155 (7) | 0.0207 (8) | 0.0229 (8) | 0.0010 (6) | 0.0040 (6) | −0.0014 (7) |
| C11 | 0.0202 (8) | 0.0197 (8) | 0.0192 (8) | −0.0041 (7) | 0.0055 (6) | −0.0012 (6) |
| C21 | 0.0168 (7) | 0.0173 (8) | 0.0233 (8) | −0.0023 (6) | −0.0005 (6) | −0.0004 (6) |
| Cl4—C4 | 1.7291 (17) | C11A—C12A | 1.442 (2) |
| Cl5—C5 | 1.7305 (19) | C11A—C14A | 1.412 (3) |
| O11—C11 | 1.218 (2) | C12A—C13A | 1.408 (3) |
| O12—C11 | 1.299 (2) | C2A—H2A | 0.9300 |
| O21—C21 | 1.276 (2) | C3A—H3A | 0.9300 |
| O22—C21 | 1.236 (2) | C4A—H4A | 0.9300 |
| O12—H12 | 0.98 (3) | C5A—H5A | 0.9300 |
| N1A—C12A | 1.363 (2) | C6A—H6A | 0.9300 |
| N1A—C2A | 1.327 (2) | C7A—H7A | 0.9300 |
| N10A—C11A | 1.354 (2) | C8A—H8A | 0.9300 |
| N10A—C9A | 1.316 (2) | C9A—H9A | 0.9300 |
| N1A—H1A | 0.90 (2) | C1—C2 | 1.419 (3) |
| C2A—C3A | 1.395 (3) | C1—C11 | 1.538 (2) |
| C3A—C4A | 1.379 (3) | C1—C6 | 1.397 (3) |
| C4A—C13A | 1.400 (3) | C2—C21 | 1.536 (3) |
| C5A—C6A | 1.345 (3) | C2—C3 | 1.393 (2) |
| C5A—C13A | 1.436 (3) | C3—C4 | 1.387 (3) |
| C6A—C14A | 1.435 (3) | C4—C5 | 1.390 (3) |
| C7A—C14A | 1.407 (3) | C5—C6 | 1.377 (3) |
| C7A—C8A | 1.369 (3) | C3—H3 | 0.9300 |
| C8A—C9A | 1.409 (3) | C6—H6 | 0.9300 |
| C11—O12—H12 | 111 (2) | C14A—C6A—H6A | 119.00 |
| C2A—N1A—C12A | 122.34 (16) | C5A—C6A—H6A | 119.00 |
| C9A—N10A—C11A | 116.68 (15) | C8A—C7A—H7A | 121.00 |
| C12A—N1A—H1A | 117.5 (13) | C14A—C7A—H7A | 121.00 |
| C2A—N1A—H1A | 120.1 (13) | C9A—C8A—H8A | 120.00 |
| N1A—C2A—C3A | 120.63 (18) | C7A—C8A—H8A | 120.00 |
| C2A—C3A—C4A | 118.74 (17) | C8A—C9A—H9A | 118.00 |
| C3A—C4A—C13A | 120.89 (17) | N10A—C9A—H9A | 118.00 |
| C6A—C5A—C13A | 120.73 (18) | C2—C1—C11 | 129.18 (16) |
| C5A—C6A—C14A | 121.35 (18) | C2—C1—C6 | 118.60 (15) |
| C8A—C7A—C14A | 118.87 (17) | C6—C1—C11 | 112.19 (16) |
| C7A—C8A—C9A | 119.43 (17) | C1—C2—C21 | 128.55 (15) |
| N10A—C9A—C8A | 123.79 (17) | C1—C2—C3 | 118.51 (16) |
| N10A—C11A—C14A | 124.31 (15) | C3—C2—C21 | 112.92 (16) |
| C12A—C11A—C14A | 117.85 (16) | C2—C3—C4 | 121.74 (17) |
| N10A—C11A—C12A | 117.83 (16) | Cl4—C4—C5 | 121.05 (14) |
| C11A—C12A—C13A | 120.89 (17) | C3—C4—C5 | 119.63 (16) |
| N1A—C12A—C11A | 119.61 (16) | Cl4—C4—C3 | 119.32 (15) |
| N1A—C12A—C13A | 119.50 (16) | C4—C5—C6 | 119.44 (17) |
| C5A—C13A—C12A | 118.94 (17) | Cl5—C5—C4 | 121.47 (14) |
| C4A—C13A—C5A | 123.19 (17) | Cl5—C5—C6 | 119.09 (15) |
| C4A—C13A—C12A | 117.87 (17) | C1—C6—C5 | 122.00 (17) |
| C6A—C14A—C7A | 122.97 (17) | O11—C11—C1 | 118.72 (15) |
| C7A—C14A—C11A | 116.91 (16) | O12—C11—C1 | 118.97 (15) |
| C6A—C14A—C11A | 120.09 (16) | O11—C11—O12 | 122.32 (16) |
| C3A—C2A—H2A | 120.00 | O22—C21—C2 | 117.04 (15) |
| N1A—C2A—H2A | 120.00 | O21—C21—O22 | 123.49 (17) |
| C2A—C3A—H3A | 121.00 | O21—C21—C2 | 119.41 (16) |
| C4A—C3A—H3A | 121.00 | C2—C3—H3 | 119.00 |
| C3A—C4A—H4A | 120.00 | C4—C3—H3 | 119.00 |
| C13A—C4A—H4A | 120.00 | C1—C6—H6 | 119.00 |
| C6A—C5A—H5A | 120.00 | C5—C6—H6 | 119.00 |
| C13A—C5A—H5A | 120.00 | ||
| C12A—N1A—C2A—C3A | 0.2 (3) | N1A—C12A—C13A—C5A | 177.27 (16) |
| C2A—N1A—C12A—C11A | −178.71 (17) | C11A—C12A—C13A—C4A | 177.79 (16) |
| C2A—N1A—C12A—C13A | 1.4 (3) | C11A—C12A—C13A—C5A | −2.6 (2) |
| C11A—N10A—C9A—C8A | 0.0 (3) | C6—C1—C2—C3 | −2.9 (2) |
| C9A—N10A—C11A—C12A | −179.22 (16) | C6—C1—C2—C21 | 175.21 (15) |
| C9A—N10A—C11A—C14A | 0.8 (2) | C11—C1—C2—C3 | 174.90 (15) |
| N1A—C2A—C3A—C4A | −0.9 (3) | C11—C1—C2—C21 | −7.0 (3) |
| C2A—C3A—C4A—C13A | −0.1 (3) | C2—C1—C6—C5 | 1.5 (2) |
| C3A—C4A—C13A—C5A | −177.89 (19) | C11—C1—C6—C5 | −176.68 (14) |
| C3A—C4A—C13A—C12A | 1.7 (3) | C2—C1—C11—O11 | −168.30 (16) |
| C13A—C5A—C6A—C14A | 2.4 (3) | C2—C1—C11—O12 | 11.4 (3) |
| C6A—C5A—C13A—C4A | 178.76 (18) | C6—C1—C11—O11 | 9.6 (2) |
| C6A—C5A—C13A—C12A | −0.8 (3) | C6—C1—C11—O12 | −170.67 (15) |
| C5A—C6A—C14A—C7A | 177.74 (17) | C1—C2—C3—C4 | 1.7 (2) |
| C5A—C6A—C14A—C11A | −0.5 (2) | C21—C2—C3—C4 | −176.64 (16) |
| C14A—C7A—C8A—C9A | −0.1 (3) | C1—C2—C21—O21 | −2.2 (3) |
| C8A—C7A—C14A—C6A | −177.47 (17) | C1—C2—C21—O22 | −179.53 (16) |
| C8A—C7A—C14A—C11A | 0.8 (2) | C3—C2—C21—O21 | 175.96 (15) |
| C7A—C8A—C9A—N10A | −0.3 (3) | C3—C2—C21—O22 | −1.4 (2) |
| N10A—C11A—C12A—N1A | 4.5 (2) | C2—C3—C4—Cl4 | −179.50 (14) |
| N10A—C11A—C12A—C13A | −175.62 (15) | C2—C3—C4—C5 | 0.9 (3) |
| C14A—C11A—C12A—N1A | −175.47 (15) | Cl4—C4—C5—Cl5 | −1.6 (2) |
| C14A—C11A—C12A—C13A | 4.4 (2) | Cl4—C4—C5—C6 | 178.04 (14) |
| N10A—C11A—C14A—C6A | 177.13 (15) | C3—C4—C5—Cl5 | 178.02 (14) |
| N10A—C11A—C14A—C7A | −1.2 (2) | C3—C4—C5—C6 | −2.4 (3) |
| C12A—C11A—C14A—C6A | −2.9 (2) | Cl5—C5—C6—C1 | −179.20 (12) |
| C12A—C11A—C14A—C7A | 178.83 (14) | C4—C5—C6—C1 | 1.2 (2) |
| N1A—C12A—C13A—C4A | −2.4 (2) |
| H··· | ||||
| N1A—H1A···O22 | 0.90 (2) | 1.83 (2) | 2.6926 (19) | 158 (2) |
| N1A—H1A···N10A | 0.90 (2) | 2.38 (2) | 2.749 (2) | 104.3 (15) |
| O12—H12···O21 | 0.98 (3) | 1.43 (3) | 2.4054 (19) | 179 (4) |
| C2A—H2A···O21 | 0.93 | 2.52 | 3.279 (2) | 140 |
| C3—H3···O22 | 0.93 | 2.26 | 2.647 (2) | 104 |
| C3A—H3A···O11i | 0.93 | 2.44 | 3.355 (2) | 168 |
| C4A—H4A···O21ii | 0.93 | 2.49 | 3.252 (2) | 139 |
| C6—H6···O11 | 0.93 | 2.29 | 2.668 (2) | 103 |
| C6A—H6A···O11iii | 0.93 | 2.59 | 3.270 (2) | 130 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1 | 0.90 (2) | 1.83 (2) | 2.6926 (19) | 158 (2) |
| N1 | 0.90 (2) | 2.38 (2) | 2.749 (2) | 104.3 (15) |
| O12—H12⋯O21 | 0.98 (3) | 1.43 (3) | 2.4054 (19) | 179 (4) |
| C2 | 0.93 | 2.52 | 3.279 (2) | 140 |
| C3—H3⋯O22 | 0.93 | 2.26 | 2.647 (2) | 104 |
| C3 | 0.93 | 2.44 | 3.355 (2) | 168 |
| C4 | 0.93 | 2.49 | 3.252 (2) | 139 |
| C6—H6⋯O11 | 0.93 | 2.29 | 2.668 (2) | 103 |
| C6 | 0.93 | 2.59 | 3.270 (2) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) .