Literature DB >> 21577782

2,2'-[1,1'-(Octane-1,8-diyldioxy-dinitrilo)diethyl-idyne]diphenol.

Wen-Kui Dong1, Jun-Feng Tong, Jian Yao, Shang-Sheng Gong, Jian-Chao Wu.   

Abstract

The title compound, C(24)H(32)N(2)O(4), has a crystallographic inversion centre at the mid-point of the central C-C bond. At each end of the mol-ecule, intra-molecular O-H⋯N hydrogen bonds generate six-membered S(6) ring motifs. The crystal structure is stabilized by pairs of weak inter-molecular C-H⋯O hydrogen bonds that link neighbouring mol-ecules into R(2) (2)(40) ring motifs, which in turn form infinite one-dimensional supra-molecular ribbon structures.

Entities:  

Year:  2009        PMID: 21577782      PMCID: PMC2970437          DOI: 10.1107/S1600536809033959

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to oxime-based salen-type tetra­dentate ligands, see: Akine et al. (2005 ▶); Dong, He et al. (2009 ▶); Dong, Sun et al. (2009 ▶). For the synthesis, see: Dong et al. (2008 ▶). For related structures, see: Dong, Zhao et al. (2009 ▶); Etemadi et al. (2009 ▶). For information relating to C—H⋯O hydrogen bonds, see: Desiraju (1996 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C24H32N2O4 M = 412.52 Monoclinic, a = 12.9524 (12) Å b = 4.6667 (6) Å c = 37.722 (3) Å β = 99.379 (2)° V = 2249.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.50 × 0.48 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.960, T max = 0.984 5371 measured reflections 1979 independent reflections 1172 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.173 S = 1.11 1979 reflections 137 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809033959/pk2184sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033959/pk2184Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H32N2O4F(000) = 888
Mr = 412.52Dx = 1.218 Mg m3
Monoclinic, C2/cMelting point = 345–347 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 12.9524 (12) ÅCell parameters from 1491 reflections
b = 4.6667 (6) Åθ = 2.2–27.2°
c = 37.722 (3) ŵ = 0.08 mm1
β = 99.379 (2)°T = 298 K
V = 2249.6 (4) Å3Block-like, colorless
Z = 40.50 × 0.48 × 0.20 mm
Bruker SMART CCD area-detector diffractometer1979 independent reflections
Radiation source: fine-focus sealed tube1172 reflections with I > 2σ(I)
graphiteRint = 0.069
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→15
Tmin = 0.960, Tmax = 0.984k = −5→5
5371 measured reflectionsl = −37→44
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.074H-atom parameters constrained
wR(F2) = 0.173w = 1/[σ2(Fo2) + (0.0225P)2 + 4.9486P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
1979 reflectionsΔρmax = 0.20 e Å3
137 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0080 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3869 (2)0.5102 (7)0.38238 (7)0.0490 (8)
O10.35769 (17)0.6700 (6)0.41082 (6)0.0617 (8)
O20.51778 (18)0.3352 (7)0.34323 (7)0.0746 (9)
H20.49800.42880.35930.112*
C10.4459 (3)0.8346 (9)0.42728 (9)0.0570 (10)
H1A0.42240.97860.44270.068*
H1B0.47570.93350.40870.068*
C20.5297 (2)0.6538 (9)0.44922 (9)0.0513 (9)
H2A0.55940.52540.43330.062*
H2B0.49830.53770.46590.062*
C30.6162 (2)0.8345 (9)0.46995 (9)0.0518 (9)
H3A0.58700.95130.48720.062*
H3B0.64300.96270.45340.062*
C40.7063 (2)0.6595 (9)0.48983 (9)0.0540 (10)
H4A0.67960.53330.50670.065*
H4B0.73470.54060.47270.065*
C50.3132 (2)0.3491 (8)0.36639 (8)0.0440 (9)
C60.2085 (3)0.3295 (12)0.37779 (11)0.0786 (14)
H6A0.19700.13710.38520.118*
H6B0.15520.38050.35800.118*
H6C0.20590.45850.39750.118*
C70.3382 (2)0.1742 (8)0.33664 (8)0.0447 (9)
C80.4372 (3)0.1723 (9)0.32643 (10)0.0547 (10)
C90.4582 (3)0.0008 (10)0.29864 (11)0.0699 (12)
H90.52470.00130.29240.084*
C100.3815 (4)−0.1708 (10)0.28013 (10)0.0714 (12)
H100.3961−0.28620.26150.086*
C110.2835 (4)−0.1710 (10)0.28930 (10)0.0699 (12)
H110.2313−0.28590.27670.084*
C120.2619 (3)−0.0026 (9)0.31692 (9)0.0587 (11)
H120.1948−0.00540.32280.070*
U11U22U33U12U13U23
N10.0372 (16)0.058 (2)0.0459 (16)0.0005 (15)−0.0117 (12)−0.0031 (17)
O10.0381 (14)0.081 (2)0.0591 (15)0.0022 (14)−0.0132 (11)−0.0207 (16)
O20.0399 (14)0.092 (2)0.0886 (19)−0.0111 (16)0.0020 (13)−0.0267 (19)
C10.044 (2)0.061 (2)0.057 (2)0.001 (2)−0.0190 (16)−0.017 (2)
C20.0416 (19)0.060 (2)0.0460 (19)−0.0056 (19)−0.0126 (15)−0.001 (2)
C30.0413 (19)0.060 (2)0.0483 (19)−0.002 (2)−0.0097 (15)−0.012 (2)
C40.0395 (19)0.061 (2)0.056 (2)−0.004 (2)−0.0099 (15)−0.009 (2)
C50.0320 (18)0.050 (2)0.0437 (18)−0.0007 (17)−0.0128 (14)0.0062 (19)
C60.045 (2)0.108 (4)0.080 (3)−0.017 (3)0.0029 (19)−0.024 (3)
C70.0380 (19)0.046 (2)0.0433 (18)−0.0042 (17)−0.0124 (14)0.0072 (18)
C80.050 (2)0.054 (2)0.055 (2)−0.001 (2)−0.0078 (17)−0.003 (2)
C90.061 (3)0.080 (3)0.067 (3)0.002 (3)0.005 (2)−0.003 (3)
C100.092 (3)0.068 (3)0.051 (2)0.005 (3)0.001 (2)−0.002 (2)
C110.083 (3)0.066 (3)0.051 (2)−0.019 (3)−0.016 (2)0.003 (2)
C120.055 (2)0.064 (3)0.051 (2)−0.012 (2)−0.0112 (17)0.009 (2)
N1—C51.285 (4)C4—H4B0.9700
N1—O11.408 (3)C5—C71.466 (5)
O1—C11.432 (4)C5—C61.491 (5)
O2—C81.361 (4)C6—H6A0.9600
O2—H20.8200C6—H6B0.9600
C1—C21.511 (5)C6—H6C0.9600
C1—H1A0.9700C7—C81.398 (5)
C1—H1B0.9700C7—C121.404 (5)
C2—C31.514 (5)C8—C91.380 (5)
C2—H2A0.9700C9—C101.375 (6)
C2—H2B0.9700C9—H90.9300
C3—C41.518 (5)C10—C111.369 (5)
C3—H3A0.9700C10—H100.9300
C3—H3B0.9700C11—C121.370 (5)
C4—C4i1.517 (6)C11—H110.9300
C4—H4A0.9700C12—H120.9300
C5—N1—O1113.3 (3)N1—C5—C7116.5 (3)
N1—O1—C1108.7 (3)N1—C5—C6122.8 (3)
C8—O2—H2109.5C7—C5—C6120.7 (3)
O1—C1—C2112.9 (3)C5—C6—H6A109.5
O1—C1—H1A109.0C5—C6—H6B109.5
C2—C1—H1A109.0H6A—C6—H6B109.5
O1—C1—H1B109.0C5—C6—H6C109.5
C2—C1—H1B109.0H6A—C6—H6C109.5
H1A—C1—H1B107.8H6B—C6—H6C109.5
C1—C2—C3112.1 (3)C8—C7—C12116.7 (3)
C1—C2—H2A109.2C8—C7—C5122.7 (3)
C3—C2—H2A109.2C12—C7—C5120.6 (3)
C1—C2—H2B109.2O2—C8—C9116.5 (4)
C3—C2—H2B109.2O2—C8—C7122.4 (3)
H2A—C2—H2B107.9C9—C8—C7121.0 (4)
C2—C3—C4113.6 (3)C10—C9—C8120.5 (4)
C2—C3—H3A108.8C10—C9—H9119.7
C4—C3—H3A108.8C8—C9—H9119.7
C2—C3—H3B108.8C11—C10—C9119.7 (4)
C4—C3—H3B108.8C11—C10—H10120.2
H3A—C3—H3B107.7C9—C10—H10120.2
C4i—C4—C3113.6 (4)C10—C11—C12120.3 (4)
C4i—C4—H4A108.8C10—C11—H11119.9
C3—C4—H4A108.8C12—C11—H11119.9
C4i—C4—H4B108.8C11—C12—C7121.8 (4)
C3—C4—H4B108.8C11—C12—H12119.1
H4A—C4—H4B107.7C7—C12—H12119.1
C5—N1—O1—C1178.4 (3)C12—C7—C8—O2179.6 (3)
N1—O1—C1—C2−72.6 (4)C5—C7—C8—O2−0.6 (6)
O1—C1—C2—C3−173.2 (3)C12—C7—C8—C9−1.0 (5)
C1—C2—C3—C4−175.1 (3)C5—C7—C8—C9178.8 (3)
C2—C3—C4—C4i179.2 (4)O2—C8—C9—C10−180.0 (4)
O1—N1—C5—C7−179.5 (3)C7—C8—C9—C100.6 (6)
O1—N1—C5—C6−1.6 (5)C8—C9—C10—C110.1 (6)
N1—C5—C7—C82.0 (5)C9—C10—C11—C12−0.4 (6)
C6—C5—C7—C8−176.0 (4)C10—C11—C12—C70.0 (6)
N1—C5—C7—C12−178.2 (3)C8—C7—C12—C110.7 (5)
C6—C5—C7—C123.8 (5)C5—C7—C12—C11−179.1 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.842.558 (4)145
C12—H12···O2ii0.932.643.544 (5)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N10.821.842.558 (4)145
C12—H12⋯O2i0.932.643.544 (5)164

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The C-h···o hydrogen bond:  structural implications and supramolecular design.

Authors:  G R Desiraju
Journal:  Acc Chem Res       Date:  1996-09       Impact factor: 22.384

3.  Oxime-based salen-type tetradentate ligands with high stability against imine metathesis reaction.

Authors:  Shigehisa Akine; Takanori Taniguchi; Wenkui Dong; Sayuri Masubuchi; Tatsuya Nabeshima
Journal:  J Org Chem       Date:  2005-03-04       Impact factor: 4.354

4.  Bis(2-hydroxy-benzaldehyde oxime) O,O'-butane-1,4-diyldicarbonyl ether.

Authors:  Bijan Etemadi; Reza Kia; Hashem Sharghi; Mona Hosseini Sarvari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

5.  2,2'-[1,1'-(Propane-1,3-diyldioxy-dinitrilo)diethyl-idyne]diphenol.

Authors:  Wen-Kui Dong; Xue-Ni He; Jin-Kui Zhong; Xiao Chen; Tian-Zhi Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17
  5 in total

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