Literature DB >> 21577755

catena-Poly[[pyridinecopper(II)]-μ-N-[(2-oxido-1-naphth-yl)methyl-ene]glycinato].

Ling-Wei Xue1, Xing-Wu Li, Gan-Qing Zhao, Qin-Long Peng.   

Abstract

In the title compound, [Cu(C(13)H(9)n class="Chemical">NO(3))(C(5)H(5)N)], the Cu(II) atom is coordinated in a distorted square-pyramidal geometry, with two N and two O atoms in the basal positions and one O atom in the apical position. The apical Cu-O bond [2.3520 (16) Å] is much longer than the basal Cu-O and Cu-N bonds [1.9139 (14)-2.0136 (17) Å]. The carboxyl-ate group bridges Cu(II) atoms, forming a zigzag chain along the a axis.

Entities:  

Year:  2009        PMID: 21577755      PMCID: PMC2970287          DOI: 10.1107/S1600536809037520

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Basu Baul et al. (2007 ▶); Parekh et al. (2006 ▶); Usman et al. (2003 ▶); Vigato & Tamburini (2004 ▶); Casella & Gullotti (1983 ▶).

Experimental

Crystal data

[Cu(n class="CellLine">C13H9NO3)(C5H5N)] M = 369.85 Monoclinic, a = 14.508 (4) Å b = 11.747 (3) Å c = 9.407 (3) Å β = 101.805 (3)° V = 1569.5 (8) Å3 Z = 4 Mo Kα radiation μ = 1.41 mm−1 T = 296 K 0.30 × 0.30 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.662, T max = 0.703 7938 measured reflections 2770 independent reflections 2460 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.069 S = 1.04 2770 reflections 218 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAIn class="Chemical">NT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809037520/is2450sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809037520/is2450Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C13H9NO3)(C5H5N)]F(000) = 756
Mr = 369.85Dx = 1.565 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4385 reflections
a = 14.508 (4) Åθ = 2.3–27.5°
b = 11.747 (3) ŵ = 1.41 mm1
c = 9.407 (3) ÅT = 296 K
β = 101.805 (3)°Block, brown
V = 1569.5 (8) Å30.30 × 0.30 × 0.25 mm
Z = 4
Bruker APEXII CCD diffractometer2770 independent reflections
Radiation source: fine-focus sealed tube2460 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→17
Tmin = 0.662, Tmax = 0.703k = −13→13
7938 measured reflectionsl = −10→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0336P)2 + 0.6894P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2770 reflectionsΔρmax = 0.26 e Å3
218 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0072 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.754799 (16)0.40947 (2)0.14007 (3)0.03547 (11)
C10.58094 (14)0.47447 (17)0.2269 (2)0.0363 (5)
C20.53738 (17)0.5434 (2)0.3195 (3)0.0499 (6)
H20.57340.59670.37970.060*
C30.44485 (18)0.5327 (2)0.3216 (3)0.0555 (6)
H30.41940.57740.38550.067*
C40.38571 (16)0.4559 (2)0.2299 (3)0.0468 (6)
C50.28967 (18)0.4444 (3)0.2361 (3)0.0638 (7)
H50.26570.48640.30410.077*
C60.23200 (19)0.3736 (3)0.1457 (4)0.0716 (8)
H60.16930.36590.15250.086*
C70.26763 (17)0.3122 (2)0.0417 (3)0.0645 (7)
H70.22790.2647−0.02240.077*
C80.36069 (15)0.3211 (2)0.0331 (3)0.0494 (6)
H80.38270.2801−0.03780.059*
C90.42367 (15)0.39105 (17)0.1292 (2)0.0389 (5)
C100.52409 (14)0.39925 (16)0.1297 (2)0.0335 (4)
C110.56303 (14)0.33185 (17)0.0311 (2)0.0354 (5)
H110.52140.2884−0.03570.042*
C120.68024 (15)0.25177 (19)−0.0810 (2)0.0436 (5)
H12A0.63760.2612−0.17420.052*
H12B0.67750.1729−0.05150.052*
C130.77987 (14)0.28074 (17)−0.0955 (2)0.0358 (5)
C140.93488 (18)0.5307 (3)0.1688 (3)0.0643 (7)
H140.93530.49590.08020.077*
C151.0076 (2)0.6014 (3)0.2262 (4)0.0809 (10)
H151.05600.61460.17680.097*
C161.00878 (19)0.6523 (3)0.3557 (4)0.0771 (9)
H161.05720.70170.39570.093*
C170.9372 (2)0.6294 (3)0.4269 (4)0.0774 (9)
H170.93710.66130.51730.093*
C180.86512 (17)0.5579 (2)0.3615 (3)0.0601 (7)
H180.81610.54360.40900.072*
N10.65107 (11)0.32565 (14)0.02613 (18)0.0353 (4)
N20.86312 (12)0.50919 (16)0.2340 (2)0.0424 (4)
O10.67150 (10)0.48556 (12)0.24244 (16)0.0414 (3)
O20.82497 (9)0.34878 (13)−0.00179 (15)0.0400 (3)
O30.81199 (11)0.23568 (14)−0.19287 (17)0.0514 (4)
U11U22U33U12U13U23
Cu10.03099 (16)0.03984 (17)0.03662 (17)−0.00672 (10)0.00934 (11)−0.00578 (11)
C10.0389 (12)0.0339 (11)0.0372 (11)0.0025 (9)0.0102 (9)0.0061 (9)
C20.0500 (14)0.0490 (14)0.0523 (14)0.0021 (11)0.0147 (11)−0.0094 (11)
C30.0544 (15)0.0599 (15)0.0579 (16)0.0146 (12)0.0247 (12)−0.0053 (13)
C40.0391 (12)0.0486 (13)0.0557 (14)0.0110 (11)0.0164 (11)0.0125 (11)
C50.0460 (15)0.0705 (17)0.081 (2)0.0161 (14)0.0276 (14)0.0127 (15)
C60.0327 (13)0.0795 (19)0.106 (2)0.0041 (14)0.0221 (15)0.0161 (18)
C70.0344 (13)0.0645 (16)0.092 (2)−0.0042 (12)0.0073 (13)0.0084 (15)
C80.0360 (12)0.0474 (13)0.0645 (16)0.0012 (10)0.0095 (11)0.0067 (12)
C90.0339 (11)0.0350 (11)0.0482 (13)0.0049 (9)0.0094 (9)0.0136 (9)
C100.0315 (11)0.0326 (10)0.0367 (11)0.0026 (8)0.0080 (8)0.0072 (8)
C110.0324 (11)0.0352 (11)0.0375 (11)−0.0038 (9)0.0045 (8)0.0014 (9)
C120.0375 (12)0.0467 (13)0.0483 (13)−0.0069 (10)0.0130 (9)−0.0136 (10)
C130.0360 (11)0.0367 (11)0.0354 (11)−0.0006 (9)0.0089 (9)0.0009 (9)
C140.0480 (15)0.083 (2)0.0647 (17)−0.0268 (14)0.0184 (13)−0.0101 (15)
C150.0530 (17)0.098 (2)0.093 (2)−0.0358 (16)0.0169 (16)−0.0089 (19)
C160.0423 (16)0.0655 (19)0.114 (3)−0.0164 (14)−0.0072 (16)−0.0147 (18)
C170.0533 (17)0.084 (2)0.087 (2)−0.0036 (15)−0.0049 (15)−0.0427 (18)
C180.0399 (14)0.0733 (17)0.0659 (17)−0.0066 (12)0.0079 (12)−0.0227 (14)
N10.0324 (9)0.0383 (9)0.0365 (9)−0.0034 (7)0.0102 (7)−0.0055 (7)
N20.0355 (10)0.0449 (10)0.0458 (11)−0.0082 (8)0.0059 (8)−0.0046 (8)
O10.0363 (8)0.0436 (8)0.0452 (8)−0.0046 (6)0.0106 (6)−0.0091 (7)
O20.0334 (8)0.0491 (9)0.0390 (8)−0.0071 (7)0.0107 (6)−0.0067 (7)
O30.0468 (9)0.0618 (10)0.0512 (9)−0.0097 (8)0.0233 (7)−0.0191 (8)
Cu1—O11.9139 (14)C9—C101.459 (3)
Cu1—N11.9296 (17)C10—C111.422 (3)
Cu1—O21.9702 (14)C11—N11.290 (3)
Cu1—N22.0136 (17)C11—H110.9300
Cu1—O3i2.3520 (16)C12—N11.457 (3)
C1—O11.298 (2)C12—C131.518 (3)
C1—C101.410 (3)C12—H12A0.9700
C1—C21.428 (3)C12—H12B0.9700
C2—C31.352 (3)C13—O31.229 (2)
C2—H20.9300C13—O21.268 (2)
C3—C41.411 (4)C14—N21.336 (3)
C3—H30.9300C14—C151.365 (4)
C4—C91.412 (3)C14—H140.9300
C4—C51.413 (3)C15—C161.354 (5)
C5—C61.350 (4)C15—H150.9300
C5—H50.9300C16—C171.373 (4)
C6—C71.397 (4)C16—H160.9300
C6—H60.9300C17—C181.383 (4)
C7—C81.373 (3)C17—H170.9300
C7—H70.9300C18—N21.324 (3)
C8—C91.411 (3)C18—H180.9300
C8—H80.9300O3—Cu1ii2.3520 (16)
O1—Cu1—N190.96 (7)C1—C10—C9119.63 (19)
O1—Cu1—O2167.63 (6)C11—C10—C9119.40 (19)
N1—Cu1—O283.77 (6)N1—C11—C10125.71 (19)
O1—Cu1—N291.38 (7)N1—C11—H11117.1
N1—Cu1—N2172.14 (7)C10—C11—H11117.1
O2—Cu1—N292.44 (7)N1—C12—C13110.20 (17)
O1—Cu1—O3i100.09 (6)N1—C12—H12A109.6
N1—Cu1—O3i97.45 (7)C13—C12—H12A109.6
O2—Cu1—O3i91.71 (6)N1—C12—H12B109.6
N2—Cu1—O3i89.52 (7)C13—C12—H12B109.6
O1—C1—C10125.43 (19)H12A—C12—H12B108.1
O1—C1—C2116.02 (19)O3—C13—O2124.69 (19)
C10—C1—C2118.5 (2)O3—C13—C12118.91 (19)
C3—C2—C1121.4 (2)O2—C13—C12116.38 (17)
C3—C2—H2119.3N2—C14—C15123.1 (3)
C1—C2—H2119.3N2—C14—H14118.5
C2—C3—C4122.1 (2)C15—C14—H14118.5
C2—C3—H3118.9C16—C15—C14119.4 (3)
C4—C3—H3118.9C16—C15—H15120.3
C3—C4—C9118.9 (2)C14—C15—H15120.3
C3—C4—C5121.2 (2)C15—C16—C17118.8 (3)
C9—C4—C5119.9 (2)C15—C16—H16120.6
C6—C5—C4121.5 (3)C17—C16—H16120.6
C6—C5—H5119.3C16—C17—C18118.7 (3)
C4—C5—H5119.3C16—C17—H17120.6
C5—C6—C7119.3 (2)C18—C17—H17120.6
C5—C6—H6120.4N2—C18—C17122.7 (3)
C7—C6—H6120.4N2—C18—H18118.7
C8—C7—C6120.8 (3)C17—C18—H18118.7
C8—C7—H7119.6C11—N1—C12119.25 (17)
C6—C7—H7119.6C11—N1—Cu1128.09 (14)
C7—C8—C9121.5 (2)C12—N1—Cu1112.60 (13)
C7—C8—H8119.3C18—N2—C14117.3 (2)
C9—C8—H8119.3C18—N2—Cu1121.30 (16)
C8—C9—C4117.0 (2)C14—N2—Cu1121.35 (17)
C8—C9—C10123.8 (2)C1—O1—Cu1128.69 (13)
C4—C9—C10119.2 (2)C13—O2—Cu1115.74 (12)
C1—C10—C11120.96 (18)C13—O3—Cu1ii132.41 (14)
Table 1

Selected bond lengths (Å)

Cu1—O11.9139 (14)
Cu1—N11.9296 (17)
Cu1—O21.9702 (14)
Cu1—N22.0136 (17)
Cu1—O3i2.3520 (16)

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Qin-Long Peng; Gan-Qing Zhao; Li-Hua Chen; Ling-Wei Xue
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Authors:  Natsuki Katsuumi; Yuika Onami; Sayantan Pradhan; Tomoyuki Haraguchi; Takashiro Akitsu
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