Literature DB >> 21577645

Diethyl 4-(4-ethoxy-phen-yl)-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Hoong-Kun Fun, Jia Hao Goh, B Palakshi Reddy, S Sarveswari, V Vijayakumar.   

Abstract

In the title compound, C(21)H(27)NO(5), the dihydropyridine ring adopts a boat conformation. The ethoxy-phenyl ring is oriented approximately perpendicular to the planar part of the dihydropyridine ring, making a dihedral angle of 89.45 (6)°. An intra-molecular C-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal structure, neighbouring mol-ecules are linked into chains along the a axis by N-H⋯O hydrogen bonds and the chains are inter-connected into two-dimensional networks parallel to the ab plane by C-H⋯O hydrogen bonds. The structure is further stabilized by weak C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21577645      PMCID: PMC2969936          DOI: 10.1107/S160053680903339X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of 1,4-dihydro­pyridine derivatives, see: Böcker & Guengerich (1986 ▶); Cooper et al. (1992 ▶); Vo et al. (1995 ▶); Gaudio et al. (1994 ▶); Gordeev et al. (1996 ▶); Sunkel et al. (1992 ▶). For ring conformations and ring puckering analysis, see: Boeyens (1978 ▶); Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For a related structure, see: Thenmozhi et al. (2009 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H27NO5 M = 373.44 Triclinic, a = 7.5557 (1) Å b = 9.5697 (1) Å c = 14.0553 (2) Å α = 85.844 (1)° β = 87.679 (1)° γ = 81.458 (1)° V = 1001.91 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.28 × 0.27 × 0.07 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.976, T max = 0.994 20664 measured reflections 5290 independent reflections 3602 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.161 S = 1.02 5290 reflections 253 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680903339X/ci2893sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903339X/ci2893Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H27NO5Z = 2
Mr = 373.44F(000) = 400
Triclinic, P1Dx = 1.238 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5557 (1) ÅCell parameters from 5893 reflections
b = 9.5697 (1) Åθ = 2.5–30.2°
c = 14.0553 (2) ŵ = 0.09 mm1
α = 85.844 (1)°T = 296 K
β = 87.679 (1)°Plate, colourless
γ = 81.458 (1)°0.28 × 0.27 × 0.07 mm
V = 1001.91 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer5290 independent reflections
Radiation source: fine-focus sealed tube3602 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 29.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.976, Tmax = 0.994k = −11→13
20664 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0714P)2 + 0.3075P] where P = (Fo2 + 2Fc2)/3
5290 reflections(Δ/σ)max = 0.001
253 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.73624 (18)0.59395 (15)0.53338 (9)0.0547 (4)
O21.01269 (16)0.23542 (17)0.96209 (10)0.0603 (4)
O30.81388 (15)0.34092 (15)1.06441 (9)0.0511 (3)
O40.5806 (2)−0.10910 (17)0.71435 (11)0.0672 (4)
O50.85133 (17)−0.04519 (14)0.72123 (9)0.0525 (3)
N10.41011 (18)0.18714 (16)0.92272 (10)0.0402 (3)
C10.8807 (2)0.28106 (19)0.68730 (11)0.0416 (4)
H1A0.97200.20430.68700.050*
C20.8726 (2)0.3840 (2)0.61279 (12)0.0452 (4)
H2A0.95830.37610.56330.054*
C30.7373 (2)0.49899 (19)0.61149 (11)0.0412 (4)
C40.6152 (2)0.5125 (2)0.68730 (13)0.0479 (4)
H4A0.52670.59110.68860.058*
C50.6254 (2)0.40778 (19)0.76151 (12)0.0431 (4)
H5A0.54210.41750.81200.052*
C60.7553 (2)0.28953 (17)0.76285 (10)0.0333 (3)
C70.7547 (2)0.16927 (17)0.84131 (10)0.0328 (3)
H7A0.87500.11440.84340.039*
C80.7073 (2)0.22640 (17)0.93892 (10)0.0330 (3)
C90.5348 (2)0.24150 (17)0.97270 (10)0.0347 (3)
C100.4537 (2)0.09203 (17)0.85327 (11)0.0373 (4)
C110.6234 (2)0.07125 (17)0.81710 (10)0.0352 (3)
C120.5781 (3)0.6937 (2)0.51790 (14)0.0552 (5)
H12A0.55850.75720.56920.066*
H12B0.47480.64470.51590.066*
C130.6041 (4)0.7752 (3)0.42475 (17)0.0825 (8)
H13A0.49900.84270.41200.124*
H13B0.62420.71120.37460.124*
H13C0.70560.82410.42780.124*
C140.8579 (2)0.26575 (18)0.98833 (11)0.0365 (4)
C150.9594 (2)0.3755 (2)1.11817 (13)0.0532 (5)
H15A1.03880.42481.07650.064*
H15B1.02800.28971.14610.064*
C160.8798 (3)0.4675 (3)1.19452 (16)0.0695 (6)
H16A0.97300.48741.23360.104*
H16B0.79640.41981.23310.104*
H16C0.81850.55461.16600.104*
C170.6761 (2)−0.03516 (18)0.74743 (11)0.0411 (4)
C180.9092 (3)−0.1407 (3)0.64637 (16)0.0676 (6)
H18A0.8361−0.11440.59090.081*
H18B0.8960−0.23700.66870.081*
C191.0976 (4)−0.1317 (4)0.6207 (2)0.1091 (12)
H19A1.1366−0.19320.57060.164*
H19B1.1694−0.16010.67550.164*
H19C1.1098−0.03600.59930.164*
C200.4542 (2)0.3115 (2)1.05970 (12)0.0461 (4)
H20A0.54520.31021.10560.069*
H20B0.36130.26141.08700.069*
H20C0.40460.40781.04210.069*
C210.2974 (2)0.0239 (2)0.82690 (14)0.0506 (5)
H21A0.3381−0.07250.81300.076*
H21B0.24270.07480.77170.076*
H21C0.21140.02610.87920.076*
H1N10.303 (3)0.200 (2)0.9447 (15)0.063 (6)*
U11U22U33U12U13U23
O10.0620 (8)0.0562 (8)0.0433 (7)−0.0086 (7)0.0050 (6)0.0103 (6)
O20.0287 (6)0.0946 (11)0.0613 (8)−0.0088 (6)0.0039 (5)−0.0333 (8)
O30.0326 (6)0.0773 (9)0.0471 (7)−0.0096 (6)−0.0008 (5)−0.0263 (6)
O40.0660 (9)0.0695 (10)0.0748 (10)−0.0262 (8)0.0099 (7)−0.0365 (8)
O50.0489 (7)0.0514 (8)0.0592 (8)−0.0065 (6)0.0092 (6)−0.0238 (6)
N10.0265 (7)0.0497 (9)0.0451 (8)−0.0061 (6)0.0012 (5)−0.0090 (6)
C10.0363 (8)0.0457 (10)0.0419 (8)−0.0037 (7)0.0077 (7)−0.0057 (7)
C20.0461 (10)0.0515 (11)0.0379 (8)−0.0093 (8)0.0135 (7)−0.0056 (7)
C30.0469 (9)0.0434 (10)0.0352 (8)−0.0143 (8)0.0019 (7)−0.0016 (7)
C40.0484 (10)0.0450 (10)0.0464 (9)0.0020 (8)0.0080 (8)0.0000 (8)
C50.0427 (9)0.0446 (10)0.0394 (8)−0.0015 (7)0.0118 (7)−0.0024 (7)
C60.0320 (7)0.0376 (8)0.0321 (7)−0.0090 (6)0.0020 (6)−0.0075 (6)
C70.0282 (7)0.0370 (8)0.0326 (7)−0.0019 (6)0.0023 (5)−0.0058 (6)
C80.0289 (7)0.0381 (8)0.0318 (7)−0.0037 (6)0.0001 (5)−0.0035 (6)
C90.0304 (7)0.0394 (9)0.0340 (7)−0.0040 (6)−0.0003 (6)−0.0020 (6)
C100.0350 (8)0.0365 (9)0.0407 (8)−0.0058 (7)−0.0051 (6)−0.0015 (7)
C110.0373 (8)0.0347 (8)0.0333 (7)−0.0046 (6)−0.0018 (6)−0.0016 (6)
C120.0630 (12)0.0531 (12)0.0514 (10)−0.0148 (10)−0.0137 (9)0.0034 (9)
C130.108 (2)0.0797 (17)0.0598 (13)−0.0203 (15)−0.0214 (13)0.0220 (12)
C140.0313 (8)0.0452 (9)0.0334 (7)−0.0064 (7)0.0008 (6)−0.0042 (6)
C150.0381 (9)0.0764 (14)0.0486 (10)−0.0115 (9)−0.0083 (7)−0.0171 (9)
C160.0631 (13)0.0843 (17)0.0649 (13)−0.0092 (12)−0.0098 (10)−0.0308 (12)
C170.0466 (9)0.0382 (9)0.0387 (8)−0.0076 (7)0.0001 (7)−0.0028 (7)
C180.0696 (14)0.0679 (15)0.0687 (13)−0.0092 (11)0.0135 (11)−0.0369 (11)
C190.0758 (18)0.135 (3)0.128 (3)−0.0290 (18)0.0381 (17)−0.086 (2)
C200.0338 (8)0.0614 (12)0.0430 (9)−0.0055 (8)0.0073 (7)−0.0116 (8)
C210.0377 (9)0.0557 (12)0.0617 (11)−0.0132 (8)−0.0060 (8)−0.0110 (9)
O1—C31.373 (2)C10—C111.352 (2)
O1—C121.428 (2)C10—C211.502 (2)
O2—C141.2115 (18)C11—C171.465 (2)
O3—C141.3353 (19)C12—C131.496 (3)
O3—C151.450 (2)C12—H12A0.97
O4—C171.210 (2)C12—H12B0.97
O5—C171.351 (2)C13—H13A0.96
O5—C181.455 (2)C13—H13B0.96
N1—C101.380 (2)C13—H13C0.96
N1—C91.380 (2)C15—C161.488 (3)
N1—H1N10.85 (2)C15—H15A0.97
C1—C21.382 (2)C15—H15B0.97
C1—C61.393 (2)C16—H16A0.96
C1—H1A0.93C16—H16B0.96
C2—C31.386 (3)C16—H16C0.96
C2—H2A0.93C18—C191.467 (3)
C3—C41.382 (2)C18—H18A0.97
C4—C51.389 (2)C18—H18B0.97
C4—H4A0.93C19—H19A0.96
C5—C61.383 (2)C19—H19B0.96
C5—H5A0.93C19—H19C0.96
C6—C71.535 (2)C20—H20A0.96
C7—C81.523 (2)C20—H20B0.96
C7—C111.527 (2)C20—H20C0.96
C7—H7A0.98C21—H21A0.96
C8—C91.360 (2)C21—H21B0.96
C8—C141.466 (2)C21—H21C0.96
C9—C201.501 (2)
C3—O1—C12117.87 (14)C12—C13—H13A109.5
C14—O3—C15117.18 (13)C12—C13—H13B109.5
C17—O5—C18115.21 (15)H13A—C13—H13B109.5
C10—N1—C9123.89 (13)C12—C13—H13C109.5
C10—N1—H1N1118.1 (15)H13A—C13—H13C109.5
C9—N1—H1N1116.6 (15)H13B—C13—H13C109.5
C2—C1—C6121.53 (16)O2—C14—O3121.24 (15)
C2—C1—H1A119.2O2—C14—C8123.23 (14)
C6—C1—H1A119.2O3—C14—C8115.52 (13)
C1—C2—C3120.26 (15)O3—C15—C16107.77 (15)
C1—C2—H2A119.9O3—C15—H15A110.2
C3—C2—H2A119.9C16—C15—H15A110.2
O1—C3—C4124.29 (16)O3—C15—H15B110.2
O1—C3—C2116.40 (14)C16—C15—H15B110.2
C4—C3—C2119.31 (15)H15A—C15—H15B108.5
C3—C4—C5119.52 (16)C15—C16—H16A109.5
C3—C4—H4A120.2C15—C16—H16B109.5
C5—C4—H4A120.2H16A—C16—H16B109.5
C6—C5—C4122.26 (15)C15—C16—H16C109.5
C6—C5—H5A118.9H16A—C16—H16C109.5
C4—C5—H5A118.9H16B—C16—H16C109.5
C5—C6—C1117.05 (15)O4—C17—O5120.80 (16)
C5—C6—C7121.32 (13)O4—C17—C11126.77 (16)
C1—C6—C7121.55 (14)O5—C17—C11112.43 (14)
C8—C7—C11110.43 (12)O5—C18—C19108.76 (19)
C8—C7—C6111.55 (12)O5—C18—H18A109.9
C11—C7—C6109.65 (12)C19—C18—H18A109.9
C8—C7—H7A108.4O5—C18—H18B109.9
C11—C7—H7A108.4C19—C18—H18B109.9
C6—C7—H7A108.4H18A—C18—H18B108.3
C9—C8—C14124.96 (14)C18—C19—H19A109.5
C9—C8—C7120.06 (13)C18—C19—H19B109.5
C14—C8—C7114.94 (12)H19A—C19—H19B109.5
C8—C9—N1118.44 (14)C18—C19—H19C109.5
C8—C9—C20129.12 (15)H19A—C19—H19C109.5
N1—C9—C20112.44 (13)H19B—C19—H19C109.5
C11—C10—N1119.10 (15)C9—C20—H20A109.5
C11—C10—C21128.03 (15)C9—C20—H20B109.5
N1—C10—C21112.87 (14)H20A—C20—H20B109.5
C10—C11—C17120.26 (15)C9—C20—H20C109.5
C10—C11—C7119.61 (14)H20A—C20—H20C109.5
C17—C11—C7119.84 (13)H20B—C20—H20C109.5
O1—C12—C13107.53 (18)C10—C21—H21A109.5
O1—C12—H12A110.2C10—C21—H21B109.5
C13—C12—H12A110.2H21A—C21—H21B109.5
O1—C12—H12B110.2C10—C21—H21C109.5
C13—C12—H12B110.2H21A—C21—H21C109.5
H12A—C12—H12B108.5H21B—C21—H21C109.5
C6—C1—C2—C3−0.3 (3)C9—N1—C10—C11−14.2 (2)
C12—O1—C3—C4−15.4 (3)C9—N1—C10—C21166.34 (16)
C12—O1—C3—C2165.31 (16)N1—C10—C11—C17176.38 (14)
C1—C2—C3—O1−178.08 (16)C21—C10—C11—C17−4.2 (3)
C1—C2—C3—C42.6 (3)N1—C10—C11—C7−9.8 (2)
O1—C3—C4—C5178.09 (17)C21—C10—C11—C7169.58 (16)
C2—C3—C4—C5−2.7 (3)C8—C7—C11—C1029.0 (2)
C3—C4—C5—C60.4 (3)C6—C7—C11—C10−94.32 (16)
C4—C5—C6—C11.9 (3)C8—C7—C11—C17−157.19 (13)
C4—C5—C6—C7−174.85 (16)C6—C7—C11—C1779.49 (17)
C2—C1—C6—C5−1.9 (3)C3—O1—C12—C13−174.91 (18)
C2—C1—C6—C7174.78 (16)C15—O3—C14—O2−4.4 (3)
C5—C6—C7—C8−40.9 (2)C15—O3—C14—C8176.84 (15)
C1—C6—C7—C8142.47 (15)C9—C8—C14—O2170.76 (18)
C5—C6—C7—C1181.70 (18)C7—C8—C14—O2−11.3 (2)
C1—C6—C7—C11−94.88 (17)C9—C8—C14—O3−10.5 (2)
C11—C7—C8—C9−28.3 (2)C7—C8—C14—O3167.43 (14)
C6—C7—C8—C993.93 (17)C14—O3—C15—C16175.95 (18)
C11—C7—C8—C14153.64 (13)C18—O5—C17—O44.9 (3)
C6—C7—C8—C14−84.16 (16)C18—O5—C17—C11−175.20 (16)
C14—C8—C9—N1−173.78 (15)C10—C11—C17—O42.0 (3)
C7—C8—C9—N18.3 (2)C7—C11—C17—O4−171.78 (17)
C14—C8—C9—C206.4 (3)C10—C11—C17—O5−177.96 (15)
C7—C8—C9—C20−171.48 (16)C7—C11—C17—O58.3 (2)
C10—N1—C9—C814.9 (2)C17—O5—C18—C19175.6 (2)
C10—N1—C9—C20−165.23 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O2i0.85 (2)2.18 (2)3.0045 (19)165 (2)
C12—H12A···O4ii0.972.513.458 (2)166
C20—H20A···O30.962.142.7774 (19)122
C16—H16A···Cg1iii0.962.833.767 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O2i0.85 (2)2.18 (2)3.0045 (19)165 (2)
C12—H12A⋯O4ii0.972.513.458 (2)166
C20—H20A⋯O30.962.142.7774 (19)122
C16—H16ACg1iii0.962.833.767 (2)165

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C1–C6 benzene ring.

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Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

6.  Synthesis of 3-[(2,3-dihydro-1,1,3-trioxo-1,2-benzisothiazol-2-yl)alkyl] 1,4-dihydropyridine-3,5-dicarboxylate derivatives as calcium channel modulators.

Authors:  C E Sunkel; M Fau de Casa-Juana; L Santos; A G García; C R Artalejo; M Villarroya; M A González-Morales; M G López; J Cillero; S Alonso
Journal:  J Med Chem       Date:  1992-06-26       Impact factor: 7.446

7.  1,4-Dihydropyridines as antagonists of platelet activating factor. 1. Synthesis and structure-activity relationships of 2-(4-heterocyclyl)phenyl derivatives.

Authors:  K Cooper; M J Fray; M J Parry; K Richardson; J Steele
Journal:  J Med Chem       Date:  1992-08-21       Impact factor: 7.446

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  Dimethyl 4-(4-ethoxy-phen-yl)-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; B Palakshi Reddy; S Sarveswari; V Vijayakumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-26

2.  Dimethyl 1,4-dihydro-4-(4-methoxy-phen-yl)-2,6-dimethyl-pyridine-3,5-dicarboxyl-ate.

Authors:  Wan-Sin Loh; Hoong-Kun Fun; B Palakshi Reddy; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13
  2 in total

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