Literature DB >> 21577476

Diaqua-(5,5,7,12,12,14-hexa-methyl-1,4,8,11-tetra-azacyclo-tetra-deca-ne)nickel(II) tetra-cyanidonickelate(II).

Qian Zhang1, Xiao-Ping Shen, Hu Zhou.   

Abstract

In the title complex, [Ni(C(16)H(36)N(4))(H(2)O)(2)][Ni(CN)(4)], the [Ni(teta)(H(2)O)(2)](2+) cations (teta = 5,5,7,12,12,14-hexa-methyl-1,4,8,11-tetra-azacyclo-tetra-deca-ne) and [Ni(CN)(4)](2-) anions are arranged in an alternating fashion through electrostatic and N-H⋯N and O-H⋯N hydrogen-bonding inter-actions, forming a two-dimensional layered structure. Adjacent layers are linked through weak van der Waals inter-actions, resulting in a three-dimensional supra-molecular network.

Entities:  

Year:  2009        PMID: 21577476      PMCID: PMC2970059          DOI: 10.1107/S1600536809033820

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to cyanide-bridged complexes, see: Lescouëzec et al. (2005 ▶); Liu et al. (2008 ▶); Xu et al. (2009 ▶). For related structures, see: Jiang et al. (2005 ▶, 2007 ▶); Ni et al. (2008 ▶); Yamada & Iwasaki (1969 ▶).

Experimental

Crystal data

[Ni(C16H36N4)(H2O)2][Ni(CN)4] M = 542.02 Monoclinic, a = 8.065 (8) Å b = 13.255 (12) Å c = 13.559 (10) Å β = 116.59 (4)° V = 1296 (2) Å3 Z = 2 Mo Kα radiation μ = 1.48 mm−1 T = 173 K 0.58 × 0.16 × 0.12 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.808, T max = 0.888 9778 measured reflections 2530 independent reflections 1576 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.093 S = 1.01 2530 reflections 163 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.73 e Å−3 Δρmin = −0.51 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033820/at2863sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033820/at2863Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C16H36N4)(H2O)2][Ni(CN)4]F(000) = 576
Mr = 542.02Dx = 1.389 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4392 reflections
a = 8.065 (8) Åθ = 2.3–26.0°
b = 13.255 (12) ŵ = 1.48 mm1
c = 13.559 (10) ÅT = 173 K
β = 116.59 (4)°Prism, pink
V = 1296 (2) Å30.58 × 0.16 × 0.12 mm
Z = 2
Bruker SMART APEX diffractometer1576 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.047
φ and ω scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −9→9
Tmin = 0.808, Tmax = 0.888k = −16→15
9778 measured reflectionsl = −16→16
2530 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0423P)2 + 0.2883P] where P = (Fo2 + 2Fc2)/3
2530 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.73 e Å3
2 restraintsΔρmin = −0.51 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.00000.00000.02563 (16)
Ni20.00000.00000.50000.02354 (15)
O10.1715 (3)0.08968 (15)0.44654 (15)0.0298 (5)
H1A0.153 (5)0.1515 (9)0.449 (3)0.045*
H1B0.146 (4)0.086 (2)0.3803 (10)0.045*
N1−0.1059 (5)−0.2055 (2)0.0474 (2)0.0537 (8)
N20.0522 (4)0.0799 (2)0.2194 (2)0.0477 (7)
N3−0.1760 (3)−0.02613 (18)0.33256 (18)0.0278 (6)
H3−0.120 (4)0.012 (2)0.303 (2)0.033*
N40.1362 (3)−0.12904 (18)0.49057 (19)0.0282 (6)
H40.097 (4)−0.176 (2)0.513 (2)0.034*
C1−0.0637 (4)−0.1267 (2)0.0321 (2)0.0358 (7)
C20.0293 (4)0.0502 (2)0.1355 (2)0.0321 (7)
C3−0.4969 (4)−0.0695 (3)0.3047 (2)0.0441 (8)
H3A−0.5060−0.13290.26550.066*
H3B−0.6212−0.04100.28060.066*
H3C−0.4408−0.08230.38420.066*
C4−0.3767 (4)0.0051 (2)0.2793 (2)0.0368 (8)
C5−0.4462 (5)0.0123 (3)0.1536 (3)0.0538 (10)
H5A−0.37790.06540.13710.081*
H5B−0.57880.02830.11810.081*
H5C−0.4261−0.05240.12560.081*
C6−0.1359 (4)−0.1309 (2)0.3117 (2)0.0368 (8)
H6A−0.1808−0.14160.23160.044*
H6B−0.2009−0.17910.33820.044*
C70.0699 (4)−0.1490 (2)0.3712 (2)0.0348 (7)
H7A0.0977−0.21970.36010.042*
H7B0.1344−0.10390.34130.042*
C80.4289 (5)−0.2269 (3)0.5442 (3)0.0530 (10)
H8A0.3772−0.28380.56740.080*
H8B0.5634−0.22420.59010.080*
H8C0.4023−0.23550.46680.080*
C90.3411 (4)−0.1285 (2)0.5574 (2)0.0348 (7)
H90.3932−0.07130.53190.042*
C100.3891 (4)−0.1115 (2)0.6794 (2)0.0412 (8)
H10A0.3070−0.15580.69690.049*
H10B0.5175−0.13580.72380.049*
U11U22U33U12U13U23
Ni10.0380 (3)0.0219 (3)0.0229 (3)−0.0001 (2)0.0188 (2)0.0007 (2)
Ni20.0290 (3)0.0228 (3)0.0216 (3)0.0012 (2)0.0138 (2)0.0004 (2)
O10.0416 (12)0.0258 (12)0.0265 (10)0.0003 (11)0.0195 (9)−0.0004 (10)
N10.093 (2)0.0286 (16)0.069 (2)−0.0054 (17)0.0625 (19)−0.0004 (15)
N20.078 (2)0.0434 (17)0.0344 (14)−0.0084 (16)0.0364 (15)−0.0043 (13)
N30.0293 (14)0.0323 (15)0.0234 (12)−0.0030 (11)0.0134 (11)0.0006 (10)
N40.0342 (15)0.0242 (14)0.0339 (13)0.0020 (12)0.0221 (11)0.0032 (11)
C10.052 (2)0.0330 (19)0.0348 (16)0.0011 (16)0.0302 (16)−0.0012 (14)
C20.0469 (19)0.0269 (18)0.0293 (15)0.0004 (15)0.0232 (14)0.0052 (13)
C30.0329 (18)0.058 (2)0.0374 (17)−0.0086 (17)0.0117 (14)0.0059 (16)
C40.0325 (17)0.046 (2)0.0281 (15)−0.0030 (16)0.0100 (13)0.0061 (14)
C50.048 (2)0.076 (3)0.0265 (16)−0.0072 (19)0.0068 (15)0.0096 (17)
C60.052 (2)0.0327 (19)0.0296 (15)−0.0100 (16)0.0220 (15)−0.0087 (14)
C70.049 (2)0.0287 (18)0.0381 (17)0.0009 (15)0.0300 (15)−0.0054 (13)
C80.052 (2)0.042 (2)0.078 (3)0.0205 (17)0.040 (2)0.0140 (18)
C90.0366 (18)0.0316 (18)0.0446 (17)0.0071 (15)0.0258 (15)0.0087 (14)
C100.0329 (18)0.048 (2)0.0398 (17)0.0071 (16)0.0133 (14)0.0166 (15)
Ni1—C11.863 (4)C3—H3B0.9800
Ni1—C1i1.863 (4)C3—H3C0.9800
Ni1—C2i1.867 (3)C4—C10ii1.537 (5)
Ni1—C21.867 (3)C4—C51.541 (4)
Ni2—N42.067 (3)C5—H5A0.9800
Ni2—N4ii2.067 (3)C5—H5B0.9800
Ni2—N3ii2.099 (3)C5—H5C0.9800
Ni2—N32.099 (3)C6—C71.505 (4)
Ni2—O1ii2.179 (2)C6—H6A0.9900
Ni2—O12.179 (2)C6—H6B0.9900
O1—H1A0.835 (10)C7—H7A0.9900
O1—H1B0.830 (10)C7—H7B0.9900
N1—C11.146 (4)C8—C91.532 (4)
N2—C21.137 (3)C8—H8A0.9800
N3—C61.482 (4)C8—H8B0.9800
N3—C41.505 (4)C8—H8C0.9800
N3—H30.88 (3)C9—C101.538 (4)
N4—C71.484 (4)C9—H91.0000
N4—C91.487 (4)C10—C4ii1.537 (5)
N4—H40.81 (3)C10—H10A0.9900
C3—C41.528 (4)C10—H10B0.9900
C3—H3A0.9800
C1—Ni1—C1i180.0 (2)H3B—C3—H3C109.5
C1—Ni1—C2i88.96 (13)N3—C4—C3111.6 (3)
C1i—Ni1—C2i91.04 (13)N3—C4—C10ii108.0 (2)
C1—Ni1—C291.04 (13)C3—C4—C10ii111.1 (3)
C1i—Ni1—C288.96 (13)N3—C4—C5109.2 (3)
C2i—Ni1—C2180.0 (3)C3—C4—C5109.6 (3)
N4—Ni2—N4ii180.00 (14)C10ii—C4—C5107.2 (3)
N4—Ni2—N3ii94.74 (10)C4—C5—H5A109.5
N4ii—Ni2—N3ii85.26 (10)C4—C5—H5B109.5
N4—Ni2—N385.26 (10)H5A—C5—H5B109.5
N4ii—Ni2—N394.74 (10)C4—C5—H5C109.5
N3ii—Ni2—N3180.0H5A—C5—H5C109.5
N4—Ni2—O1ii90.18 (10)H5B—C5—H5C109.5
N4ii—Ni2—O1ii89.82 (10)N3—C6—C7109.3 (2)
N3ii—Ni2—O1ii87.30 (10)N3—C6—H6A109.8
N3—Ni2—O1ii92.70 (10)C7—C6—H6A109.8
N4—Ni2—O189.82 (10)N3—C6—H6B109.8
N4ii—Ni2—O190.18 (10)C7—C6—H6B109.8
N3ii—Ni2—O192.70 (10)H6A—C6—H6B108.3
N3—Ni2—O187.30 (10)N4—C7—C6109.2 (2)
O1ii—Ni2—O1180.0N4—C7—H7A109.8
Ni2—O1—H1A112 (2)C6—C7—H7A109.8
Ni2—O1—H1B116 (2)N4—C7—H7B109.8
H1A—O1—H1B98 (3)C6—C7—H7B109.8
C6—N3—C4116.5 (2)H7A—C7—H7B108.3
C6—N3—Ni2105.14 (17)C9—C8—H8A109.5
C4—N3—Ni2122.34 (18)C9—C8—H8B109.5
C6—N3—H3105.1 (19)H8A—C8—H8B109.5
C4—N3—H3106 (2)C9—C8—H8C109.5
Ni2—N3—H399 (2)H8A—C8—H8C109.5
C7—N4—C9115.1 (2)H8B—C8—H8C109.5
C7—N4—Ni2105.86 (18)N4—C9—C8111.8 (3)
C9—N4—Ni2115.77 (19)N4—C9—C10109.4 (2)
C7—N4—H4105 (2)C8—C9—C10110.1 (3)
C9—N4—H4107 (2)N4—C9—H9108.5
Ni2—N4—H4107 (2)C8—C9—H9108.5
N1—C1—Ni1177.2 (3)C10—C9—H9108.5
N2—C2—Ni1178.0 (3)C4ii—C10—C9120.0 (2)
C4—C3—H3A109.5C4ii—C10—H10A107.3
C4—C3—H3B109.5C9—C10—H10A107.3
H3A—C3—H3B109.5C4ii—C10—H10B107.3
C4—C3—H3C109.5C9—C10—H10B107.3
H3A—C3—H3C109.5H10A—C10—H10B106.9
D—H···AD—HH···AD···AD—H···A
N4—H4···N1iii0.81 (3)2.46 (3)3.250 (4)164 (3)
N3—H3···N20.88 (3)2.34 (3)3.201 (4)167 (3)
O1—H1B···N20.83 (1)1.96 (1)2.789 (4)172 (3)
O1—H1A···N1iv0.84 (1)1.94 (1)2.775 (4)179 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯N1i0.81 (3)2.46 (3)3.250 (4)164 (3)
N3—H3⋯N20.88 (3)2.34 (3)3.201 (4)167 (3)
O1—H1B⋯N20.830 (10)1.964 (11)2.789 (4)172 (3)
O1—H1A⋯N1ii0.835 (10)1.939 (11)2.775 (4)179 (3)

Symmetry codes: (i) ; (ii) .

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