Literature DB >> 21577459

Bis{5-meth-oxy-2-[(1H-pyrrol-2-yl)methyl-imino-meth-yl]phenolato}zinc(II).

Ying-Jie Cai1, Peng Huang, Jin Li, Qiang Wang.   

Abstract

The title compound, [Zn(C(13)n class="Species">H(13)N(2)O(2))(2)], contains a Zn(II) centre, located on a twofold rotation axis, that is coordinated by two O atoms and two N atoms from two salicylal Schiff base mol-ecules. The crystal structure is stabilized by inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577459      PMCID: PMC2970064          DOI: 10.1107/S1600536809032784

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the importance of zinc derivatives in biological processes, see: Chen et al. (2007 ▶); Xiao & Xiao (2008 ▶); Xiao et al. (2007 ▶, 2008 ▶). For related structures, see: You & Zhu (2006 ▶); Zhu et al. (2004 ▶); Qiu et al. (2004 ▶).

Experimental

Crystal data

[Zn(C13n class="Species">H13N2O2)2] M = 523.88 Monoclinic, a = 27.210 (4) Å b = 5.2239 (9) Å c = 24.335 (3) Å β = 137.179 (9)° V = 2351.1 (6) Å3 Z = 4 Mo Kα radiation μ = 1.09 mm−1 T = 298 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker SMART APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.736, T max = 0.812 8100 measured reflections 2881 independent reflections 2429 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.154 S = 1.08 2881 reflections 160 parameters H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.57 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032784/hg2551sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032784/hg2551Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C13H13N2O2)2]F(000) = 1088
Mr = 523.88Dx = 1.480 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2301 reflections
a = 27.210 (4) Åθ = 2.5–26.1°
b = 5.2239 (9) ŵ = 1.09 mm1
c = 24.335 (3) ÅT = 298 K
β = 137.179 (9)°Block, colorless
V = 2351.1 (6) Å30.30 × 0.30 × 0.20 mm
Z = 4
Bruker SMART APEX area-detector diffractometer2881 independent reflections
Radiation source: fine-focus sealed tube2429 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −36→35
Tmin = 0.736, Tmax = 0.812k = −6→6
8100 measured reflectionsl = −26→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0814P)2 + 2.3252P] where P = (Fo2 + 2Fc2)/3
2881 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −0.57 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.93603 (16)0.2495 (6)0.29548 (18)0.0401 (6)
C20.87592 (16)0.4163 (6)0.24129 (18)0.0398 (6)
C30.81985 (18)0.3941 (7)0.2349 (2)0.0503 (8)
H30.78020.50260.19960.060*
C40.82168 (18)0.2211 (7)0.2782 (2)0.0550 (8)
H40.78380.21050.27200.066*
C50.8813 (2)0.0602 (7)0.3317 (2)0.0490 (8)
C60.93736 (19)0.0707 (6)0.3401 (2)0.0462 (7)
H60.9763−0.04090.37540.055*
C70.9380 (2)−0.2809 (8)0.4279 (2)0.0673 (10)
H7A0.9385−0.39530.39730.101*
H7B0.9317−0.37740.45590.101*
H7C0.9830−0.18960.46630.101*
C80.86588 (16)0.6031 (6)0.19107 (18)0.0418 (7)
H80.82400.70090.15920.050*
C90.88198 (18)0.8391 (7)0.1226 (2)0.0507 (8)
H9A0.92080.95540.14490.061*
H9B0.84300.93890.10650.061*
C100.85569 (18)0.7069 (7)0.0508 (2)0.0523 (8)
C110.8621 (2)0.7591 (13)0.0026 (3)0.0938 (18)
H110.88690.89410.00660.113*
C120.8210 (3)0.5539 (14)−0.0582 (3)0.103 (2)
H120.81550.5318−0.10040.123*
C130.7934 (3)0.4069 (13)−0.0421 (3)0.103 (2)
H130.76460.2637−0.07170.124*
N10.90797 (13)0.6538 (5)0.18427 (15)0.0398 (5)
N20.81349 (18)0.4967 (6)0.02362 (19)0.0571 (8)
H20.80160.43200.04510.069*
O10.99094 (12)0.2514 (5)0.30668 (15)0.0552 (6)
O20.88016 (16)−0.1038 (6)0.37455 (17)0.0663 (7)
Zn11.00000.46424 (10)0.25000.0430 (2)
U11U22U33U12U13U23
C10.0412 (15)0.0449 (16)0.0473 (16)−0.0004 (12)0.0366 (14)−0.0027 (13)
C20.0376 (14)0.0469 (17)0.0450 (16)−0.0015 (12)0.0334 (14)−0.0038 (13)
C30.0426 (16)0.065 (2)0.0567 (19)0.0051 (15)0.0406 (16)0.0019 (16)
C40.0501 (18)0.073 (2)0.065 (2)−0.0037 (17)0.0497 (18)−0.0036 (18)
C50.058 (2)0.0520 (18)0.0553 (19)−0.0101 (15)0.0475 (18)−0.0071 (15)
C60.0513 (18)0.0469 (17)0.0528 (18)0.0015 (14)0.0421 (16)0.0016 (14)
C70.086 (3)0.060 (2)0.067 (2)−0.011 (2)0.059 (2)0.0029 (19)
C80.0363 (14)0.0465 (16)0.0448 (16)0.0037 (12)0.0304 (14)−0.0004 (13)
C90.0515 (18)0.0459 (18)0.060 (2)−0.0014 (14)0.0424 (17)0.0043 (15)
C100.0449 (17)0.067 (2)0.0499 (18)0.0130 (15)0.0363 (16)0.0157 (16)
C110.067 (3)0.156 (5)0.081 (3)0.038 (3)0.061 (3)0.049 (3)
C120.081 (4)0.168 (6)0.059 (3)0.047 (4)0.051 (3)0.013 (3)
C130.091 (4)0.114 (5)0.060 (3)0.025 (3)0.042 (3)−0.013 (3)
N10.0355 (12)0.0458 (13)0.0423 (13)−0.0016 (10)0.0298 (11)−0.0022 (11)
N20.0605 (19)0.0552 (18)0.0486 (16)−0.0063 (13)0.0378 (16)−0.0074 (13)
O10.0481 (12)0.0674 (15)0.0712 (15)0.0150 (11)0.0504 (13)0.0210 (12)
O20.0821 (18)0.0695 (17)0.0832 (19)−0.0025 (15)0.0719 (17)0.0089 (15)
Zn10.0374 (3)0.0513 (3)0.0530 (3)0.0000.0372 (3)0.000
C1—O11.308 (3)C9—N11.460 (4)
C1—C61.412 (4)C9—C101.487 (5)
C1—C21.417 (4)C9—H9A0.9700
C2—C31.421 (4)C9—H9B0.9700
C2—C81.425 (4)C10—C111.333 (5)
C3—C41.360 (5)C10—N21.359 (5)
C3—H30.9300C11—C121.471 (8)
C4—C51.391 (5)C11—H110.9300
C4—H40.9300C12—C131.318 (9)
C5—O21.367 (4)C12—H120.9300
C5—C61.384 (5)C13—N21.340 (6)
C6—H60.9300C13—H130.9300
C7—O21.422 (5)N1—Zn11.983 (2)
C7—H7A0.9600N2—H20.8600
C7—H7B0.9600O1—Zn11.923 (2)
C7—H7C0.9600Zn1—O1i1.923 (2)
C8—N11.299 (4)Zn1—N1i1.983 (2)
C8—H80.9300
O1—C1—C6117.6 (3)N1—C9—H9B109.5
O1—C1—C2123.5 (3)C10—C9—H9B109.5
C6—C1—C2118.9 (3)H9A—C9—H9B108.1
C1—C2—C3117.7 (3)C11—C10—N2110.3 (4)
C1—C2—C8125.7 (3)C11—C10—C9132.7 (4)
C3—C2—C8116.6 (3)N2—C10—C9116.9 (3)
C4—C3—C2122.9 (3)C10—C11—C12104.0 (5)
C4—C3—H3118.6C10—C11—H11128.0
C2—C3—H3118.6C12—C11—H11128.0
C3—C4—C5118.8 (3)C13—C12—C11107.7 (5)
C3—C4—H4120.6C13—C12—H12126.1
C5—C4—H4120.6C11—C12—H12126.1
O2—C5—C6123.5 (3)C12—C13—N2109.2 (6)
O2—C5—C4115.5 (3)C12—C13—H13125.4
C6—C5—C4121.1 (3)N2—C13—H13125.4
C5—C6—C1120.6 (3)C8—N1—C9117.3 (3)
C5—C6—H6119.7C8—N1—Zn1120.3 (2)
C1—C6—H6119.7C9—N1—Zn1122.2 (2)
O2—C7—H7A109.5C13—N2—C10108.8 (5)
O2—C7—H7B109.5C13—N2—H2125.6
H7A—C7—H7B109.5C10—N2—H2125.6
O2—C7—H7C109.5C1—O1—Zn1125.7 (2)
H7A—C7—H7C109.5C5—O2—C7118.3 (3)
H7B—C7—H7C109.5O1—Zn1—O1i109.36 (15)
N1—C8—C2128.1 (3)O1—Zn1—N1i117.41 (10)
N1—C8—H8116.0O1i—Zn1—N1i96.71 (10)
C2—C8—H8116.0O1—Zn1—N196.71 (10)
N1—C9—C10110.7 (3)O1i—Zn1—N1117.41 (10)
N1—C9—H9A109.5N1i—Zn1—N1120.10 (15)
C10—C9—H9A109.5
O1—C1—C2—C3−180.0 (3)C2—C8—N1—C9174.4 (3)
C6—C1—C2—C30.1 (4)C2—C8—N1—Zn1−1.1 (4)
O1—C1—C2—C81.2 (5)C10—C9—N1—C8−102.9 (3)
C6—C1—C2—C8−178.8 (3)C10—C9—N1—Zn172.5 (3)
C1—C2—C3—C4−0.1 (5)C12—C13—N2—C10−0.4 (6)
C8—C2—C3—C4178.8 (3)C11—C10—N2—C131.4 (5)
C2—C3—C4—C50.7 (5)C9—C10—N2—C13178.5 (4)
C3—C4—C5—O2178.3 (3)C6—C1—O1—Zn1177.0 (2)
C3—C4—C5—C6−1.3 (5)C2—C1—O1—Zn1−3.0 (5)
O2—C5—C6—C1−178.3 (3)C6—C5—O2—C7−3.0 (5)
C4—C5—C6—C11.3 (5)C4—C5—O2—C7177.4 (3)
O1—C1—C6—C5179.4 (3)C1—O1—Zn1—O1i−119.8 (3)
C2—C1—C6—C5−0.7 (5)C1—O1—Zn1—N1i131.4 (3)
C1—C2—C8—N11.1 (5)C1—O1—Zn1—N12.4 (3)
C3—C2—C8—N1−177.8 (3)C8—N1—Zn1—O1−0.4 (3)
N1—C9—C10—C11−139.4 (4)C9—N1—Zn1—O1−175.6 (2)
N1—C9—C10—N244.4 (4)C8—N1—Zn1—O1i115.5 (2)
N2—C10—C11—C12−1.7 (4)C9—N1—Zn1—O1i−59.7 (3)
C9—C10—C11—C12−178.1 (4)C8—N1—Zn1—N1i−127.6 (3)
C10—C11—C12—C131.4 (6)C9—N1—Zn1—N1i57.2 (2)
C11—C12—C13—N2−0.6 (6)
D—H···AD—HH···AD···AD—H···A
C9—H9A···O1ii0.972.323.291 (4)177
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9A⋯O1i0.972.323.291 (4)177

Symmetry code: (i) .

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