Literature DB >> 21575589

A software complement to AMDIS for processing GC-MS metabolomic data.

Volker Behrends1, Gregory D Tredwell, Jacob G Bundy.   

Abstract

The software package AMDIS performs gas chromatography-mass spectrometry (GC-MS) peak deconvolution but tends to produce false positives and leaves missing values where peaks are found in only a proportion of a set of chromatograms. We have developed a software complement to AMDIS that (i) allows rapid manual inspection of chromatographic peaks across all samples to confirm data quality and (ii) for a given sample set, integrates peak areas across all samples even where AMDIS deconvolution would leave missing values. The freely available package runs within the commercial Matlab environment and is useful where GC-MS is used to profile complex mixtures.
Copyright © 2011 Elsevier Inc. All rights reserved.

Mesh:

Year:  2011        PMID: 21575589     DOI: 10.1016/j.ab.2011.04.009

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  44 in total

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Journal:  Oncogene       Date:  2015-10-19       Impact factor: 9.867

Review 4.  Towards quantitative mass spectrometry-based metabolomics in microbial and mammalian systems.

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Journal:  Nat Metab       Date:  2021-11-18

6.  The mutational structure of metabolism in Caenorhabditis elegans.

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7.  Metabolomic characterization of nipple aspirate fluid by (1)H NMR spectroscopy and GC-MS.

Authors:  Gregory D Tredwell; Jessica A Miller; H-H Sherry Chow; Patricia A Thompson; Hector C Keun
Journal:  J Proteome Res       Date:  2014-01-07       Impact factor: 4.466

8.  The importance of GC-MS date processing and analysis strategies suitable for plant and environmental metabolomics : with references to Changes in the abundance of sugars and sugar-like compounds in tall fescue (Festuca arundinacea) due to growth in naphthalene-treated sand.

Authors:  Kai P Law; Ting-Li Han
Journal:  Environ Sci Pollut Res Int       Date:  2016-04-06       Impact factor: 4.223

9.  Impact of antibiotics with various target sites on the metabolome of Staphylococcus aureus.

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10.  Adipose triglyceride lipase protects renal cell endocytosis in a Drosophila dietary model of chronic kidney disease.

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Journal:  PLoS Biol       Date:  2021-05-04       Impact factor: 8.029

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