Literature DB >> 21571518

Open sesame: activating dormant replication origins in the mouse immunoglobulin heavy chain (Igh) locus.

James A Borowiec1, Carl L Schildkraut.   

Abstract

Chromosomal DNA replication in mammals initiates from replication origins whose activity differs in accordance with cell type and differentiation state. In addition to origins that are active in unperturbed conditions, chromosomes also contain dormant origins that can become functional in response to certain genotoxic stress conditions. Improper regulation of origin usage can cause genomic instability leading to tumorigenesis. We review findings from recent single-molecule DNA fiber studies examining replication of the mouse immunoglobulin heavy chain (Igh) locus, in which origin activity over a 400kb region is subject to dramatic developmental regulation. Possible models are discussed to explain such differential origin usage, particularly during replication stress conditions that can activate dormant origins.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21571518      PMCID: PMC3397252          DOI: 10.1016/j.ceb.2011.04.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  49 in total

Review 1.  Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci.

Authors:  R Berezney; D D Dubey; J A Huberman
Journal:  Chromosoma       Date:  2000-03       Impact factor: 4.316

2.  Replication and subnuclear location dynamics of the immunoglobulin heavy-chain locus in B-lineage cells.

Authors:  Jie Zhou; Olga V Ermakova; Roy Riblet; Barbara K Birshtein; Carl L Schildkraut
Journal:  Mol Cell Biol       Date:  2002-07       Impact factor: 4.272

3.  Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing.

Authors:  Mauro Anglana; Françoise Apiou; Aaron Bensimon; Michelle Debatisse
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

Review 4.  Initiation of DNA replication in multicellular eukaryotes.

Authors:  Susan A Gerbi; Zaklina Strezoska; John M Waggener
Journal:  J Struct Biol       Date:  2002 Oct-Dec       Impact factor: 2.867

5.  ATR and ATM regulate the timing of DNA replication origin firing.

Authors:  David Shechter; Vincenzo Costanzo; Jean Gautier
Journal:  Nat Cell Biol       Date:  2004-06-27       Impact factor: 28.824

6.  Visualization of altered replication dynamics after DNA damage in human cells.

Authors:  Catherine J Merrick; Dean Jackson; John F X Diffley
Journal:  J Biol Chem       Date:  2004-02-23       Impact factor: 5.157

7.  The effect of the intra-S-phase checkpoint on origins of replication in human cells.

Authors:  Neerja Karnani; Anindya Dutta
Journal:  Genes Dev       Date:  2011-03-15       Impact factor: 11.361

8.  Regulation of replication timing in fission yeast.

Authors:  S M Kim; J A Huberman
Journal:  EMBO J       Date:  2001-11-01       Impact factor: 11.598

9.  A potential role for mini-chromosome maintenance (MCM) proteins in initiation at the dihydrofolate reductase replication origin.

Authors:  Mark G Alexandrow; Marion Ritzi; Alexander Pemov; Joyce L Hamlin
Journal:  J Biol Chem       Date:  2001-11-26       Impact factor: 5.157

10.  Control of replication origin density and firing time in Xenopus egg extracts: role of a caffeine-sensitive, ATR-dependent checkpoint.

Authors:  Kathrin Marheineke; Olivier Hyrien
Journal:  J Biol Chem       Date:  2004-04-28       Impact factor: 5.157

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  13 in total

Review 1.  [Regulation of DNA replication timing].

Authors:  T D Kolesnikova
Journal:  Mol Biol (Mosk)       Date:  2013 Jan-Feb

2.  Induced transcription results in local changes in chromatin structure, replication timing, and DNA polytenization in a site of intercalary heterochromatin.

Authors:  Dmitry E Koryakov; Galina V Pokholkova; Daniil A Maksimov; Stepan N Belyakin; Elena S Belyaeva; Igor F Zhimulev
Journal:  Chromosoma       Date:  2012-09-27       Impact factor: 4.316

3.  Replication origins run (ultra) deep.

Authors:  David M Gilbert
Journal:  Nat Struct Mol Biol       Date:  2012-08       Impact factor: 15.369

4.  Aberrant firing of replication origins potentially explains intragenic nonrecurrent rearrangements within genes, including the human DMD gene.

Authors:  Arunkanth Ankala; Jordan N Kohn; Anisha Hegde; Arjun Meka; Chin Lip Hon Ephrem; Syed H Askree; Shruti Bhide; Madhuri R Hegde
Journal:  Genome Res       Date:  2011-11-16       Impact factor: 9.043

5.  Super-resolution microscopy reveals stochastic initiation of replication in Drosophila polytene chromosomes.

Authors:  Tatyana D Kolesnikova; Galina V Pokholkova; Viktoria V Dovgan; Igor F Zhimulev; Veit Schubert
Journal:  Chromosome Res       Date:  2022-02-28       Impact factor: 5.239

Review 6.  Genome Duplication: The Heartbeat of Developing Organisms.

Authors:  Melvin L DePamphilis
Journal:  Curr Top Dev Biol       Date:  2016-01-20       Impact factor: 4.897

Review 7.  Replicating Large Genomes: Divide and Conquer.

Authors:  Juan Carlos Rivera-Mulia; David M Gilbert
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

8.  Single molecule analysis of Trypanosoma brucei DNA replication dynamics.

Authors:  Simone Guedes Calderano; William C Drosopoulos; Marina Mônaco Quaresma; Catarina A Marques; Settapong Kosiyatrakul; Richard McCulloch; Carl L Schildkraut; Maria Carolina Elias
Journal:  Nucleic Acids Res       Date:  2015-02-17       Impact factor: 16.971

9.  Chromosome fragility and the abnormal replication of the FMR1 locus in fragile X syndrome.

Authors:  Dmitry Yudkin; Bruce E Hayward; Mirit I Aladjem; Daman Kumari; Karen Usdin
Journal:  Hum Mol Genet       Date:  2014-01-12       Impact factor: 5.121

Review 10.  Dormant origins, the licensing checkpoint, and the response to replicative stresses.

Authors:  Debbie McIntosh; J Julian Blow
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-10-01       Impact factor: 10.005

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