Literature DB >> 21565103

Coupling non-destructive DNA extraction and voucher retrieval for small soft-bodied Arthropods in a high-throughput context: the example of Collembola.

David Porco1, Rodolphe Rougerie, Louis Deharveng, Paul Hebert.   

Abstract

Here, we describe a simple method adapted for high-throughput protocols allowing voucher specimen recovery for Collembola and by extension for other soft-bodied small arthropods. A standard extraction protocol was tested to examine the effects of lysis duration (1, 2, 4, 12 h) on DNA concentration, amplification success and specimen condition. Good quality DNA was obtained after 1 h of lysis, while voucher condition was fine for up to 12 h. The lysis step substantially shortens the clearing process necessary for morphological examination.
© 2010 Blackwell Publishing Ltd.

Year:  2010        PMID: 21565103     DOI: 10.1111/j.1755-0998.2010.2839.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  28 in total

1.  Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve.

Authors:  Angela C Telfer; Monica R Young; Jenna Quinn; Kate Perez; Crystal N Sobel; Jayme E Sones; Valerie Levesque-Beaudin; Rachael Derbyshire; Jose Fernandez-Triana; Rodolphe Rougerie; Abinah Thevanayagam; Adrian Boskovic; Alex V Borisenko; Alex Cadel; Allison Brown; Anais Pages; Anibal H Castillo; Annegret Nicolai; Barb Mockford Glenn Mockford; Belén Bukowski; Bill Wilson; Brock Trojahn; Carole Ann Lacroix; Chris Brimblecombe; Christoper Hay; Christmas Ho; Claudia Steinke; Connor P Warne; Cristina Garrido Cortes; Daniel Engelking; Danielle Wright; Dario A Lijtmaer; David Gascoigne; David Hernandez Martich; Derek Morningstar; Dirk Neumann; Dirk Steinke; Donna DeBruin Marco DeBruin; Dylan Dobias; Elizabeth Sears; Ellen Richard; Emily Damstra; Evgeny V Zakharov; Frederic Laberge; Gemma E Collins; Gergin A Blagoev; Gerrie Grainge; Graham Ansell; Greg Meredith; Ian Hogg; Jaclyn McKeown; Janet Topan; Jason Bracey; Jerry Guenther; Jesse Sills-Gilligan; Joseph Addesi; Joshua Persi; Kara K S Layton; Kareina D'Souza; Kencho Dorji; Kevin Grundy; Kirsti Nghidinwa; Kylee Ronnenberg; Kyung Min Lee; Linxi Xie; Liuqiong Lu; Lyubomir Penev; Mailyn Gonzalez; Margaret E Rosati; Mari Kekkonen; Maria Kuzmina; Marianne Iskandar; Marko Mutanen; Maryam Fatahi; Mikko Pentinsaari; Miriam Bauman; Nadya Nikolova; Natalia V Ivanova; Nathaniel Jones; Nimalka Weerasuriya; Norman Monkhouse; Pablo D Lavinia; Paul Jannetta; Priscila E Hanisch; R Troy McMullin; Rafael Ojeda Flores; Raphaëlle Mouttet; Reid Vender; Renee N Labbee; Robert Forsyth; Rob Lauder; Ross Dickson; Ruth Kroft; Scott E Miller; Shannon MacDonald; Sishir Panthi; Stephanie Pedersen; Stephanie Sobek-Swant; Suresh Naik; Tatsiana Lipinskaya; Thanushi Eagalle; Thibaud Decaëns; Thibault Kosuth; Thomas Braukmann; Tom Woodcock; Tomas Roslin; Tony Zammit; Victoria Campbell; Vlad Dinca; Vlada Peneva; Paul D N Hebert; Jeremy R deWaard
Journal:  Biodivers Data J       Date:  2015-08-30

Review 2.  Extreme Glacial Legacies: A Synthesis of the Antarctic Springtail Phylogeographic Record.

Authors:  Angela McGaughran; Mark I Stevens; Ian D Hogg; Antonio Carapelli
Journal:  Insects       Date:  2011-04-06       Impact factor: 2.769

3.  High diversity and rapid diversification in the head louse, Pediculus humanus (Pediculidae: Phthiraptera).

Authors:  Muhammad Ashfaq; Sean Prosser; Saima Nasir; Mariyam Masood; Sujeevan Ratnasingham; Paul D N Hebert
Journal:  Sci Rep       Date:  2015-09-16       Impact factor: 4.379

4.  Revealing the hyperdiverse mite fauna of subarctic Canada through DNA barcoding.

Authors:  Monica R Young; Valerie M Behan-Pelletier; Paul D N Hebert
Journal:  PLoS One       Date:  2012-11-02       Impact factor: 3.240

5.  Cryptic diversity in the ubiquist species Parisotoma notabilis (Collembola, Isotomidae): a long-used chimeric species?

Authors:  David Porco; Mikhail Potapov; Anne Bedos; Galina Busmachiu; Wanda M Weiner; Salah Hamra-Kroua; Louis Deharveng
Journal:  PLoS One       Date:  2012-09-26       Impact factor: 3.240

6.  Sequencing degraded DNA from non-destructively sampled museum specimens for RAD-tagging and low-coverage shotgun phylogenetics.

Authors:  Mandy Man-Ying Tin; Evan Philip Economo; Alexander Sergeyevich Mikheyev
Journal:  PLoS One       Date:  2014-05-14       Impact factor: 3.240

7.  Analyzing mosquito (Diptera: culicidae) diversity in Pakistan by DNA barcoding.

Authors:  Muhammad Ashfaq; Paul D N Hebert; Jawwad H Mirza; Arif M Khan; Yusuf Zafar; M Sajjad Mirza
Journal:  PLoS One       Date:  2014-05-14       Impact factor: 3.240

8.  DNA barcoding of Bemisia tabaci complex (Hemiptera: Aleyrodidae) reveals southerly expansion of the dominant whitefly species on cotton in Pakistan.

Authors:  Muhammad Ashfaq; Paul D N Hebert; M Sajjad Mirza; Arif M Khan; Shahid Mansoor; Ghulam S Shah; Yusuf Zafar
Journal:  PLoS One       Date:  2014-08-06       Impact factor: 3.240

9.  Spiders (Araneae) of Churchill, Manitoba: DNA barcodes and morphology reveal high species diversity and new Canadian records.

Authors:  Gergin A Blagoev; Nadya I Nikolova; Crystal N Sobel; Paul D N Hebert; Sarah J Adamowicz
Journal:  BMC Ecol       Date:  2013-11-26       Impact factor: 2.964

10.  DNA Barcode Analysis of Thrips (Thysanoptera) Diversity in Pakistan Reveals Cryptic Species Complexes.

Authors:  Romana Iftikhar; Muhammad Ashfaq; Akhtar Rasool; Paul D N Hebert
Journal:  PLoS One       Date:  2016-01-07       Impact factor: 3.240

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