Literature DB >> 21565099

Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus.

Arnaud Estoup1, Stuart J E Baird, Nicolas Ray, Mathias Currat, Jean-Marie Cornuet, Filipe Santos, Mark A Beaumont, Laurent Excoffier.   

Abstract

We developed a spatially explicit model of a bioinvasion and used an approximate Bayesian computation (ABC) framework to make various inferences from a combination of genetic (microsatellite genotypes), historical (first observation dates) and geographical (spatial coordinates of introduction and sampled sites) information. Our method aims to discriminate between alternative introduction scenarios and to estimate posterior densities of demographically relevant parameters of the invasive process. The performance of our landscape-ABC method is assessed using simulated data sets differing in their information content (genetic and/or historical data). We apply our methodology to the recent introduction and spatial expansion of the cane toad, Bufo marinus, in northern Australia. We find that, at least in the context of cane toad invasion, historical data are more informative than genetic data for discriminating between introduction scenarios. However, the combination of historical and genetic data provides the most accurate estimates of demographic parameters. For the cane toad, we find some evidence for a strong bottleneck prior to introduction, a small initial number of founder individuals (about 15), a large population growth rate (about 400% per generation), a standard deviation of dispersal distance of 19 km per generation and a high invasion speed at equilibrium (50 km per year). Our approach strengthens the application of the ABC method to the field of bioinvasion by allowing statistical inferences to be made on the introduction and the spatial expansion dynamics of invasive species using a combination of various relevant sources of information.
© 2010 Blackwell Publishing Ltd.

Entities:  

Year:  2010        PMID: 21565099     DOI: 10.1111/j.1755-0998.2010.02882.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  14 in total

Review 1.  Computer simulations: tools for population and evolutionary genetics.

Authors:  Sean Hoban; Giorgio Bertorelle; Oscar E Gaggiotti
Journal:  Nat Rev Genet       Date:  2012-01-10       Impact factor: 53.242

2.  Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia.

Authors:  Daryl R Trumbo; Brendan Epstein; Paul A Hohenlohe; Ross A Alford; Lin Schwarzkopf; Andrew Storfer
Journal:  Mol Ecol       Date:  2016-08-08       Impact factor: 6.185

3.  Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source.

Authors:  A Benazzo; S Ghirotto; S T Vilaça; S Hoban
Journal:  Heredity (Edinb)       Date:  2015-04-29       Impact factor: 3.821

4.  Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation.

Authors:  B Barrès; J Carlier; M Seguin; C Fenouillet; C Cilas; V Ravigné
Journal:  Heredity (Edinb)       Date:  2012-07-25       Impact factor: 3.821

5.  Genetic diversity in introduced populations with an Allee effect.

Authors:  Meike J Wittmann; Wilfried Gabriel; Dirk Metzler
Journal:  Genetics       Date:  2014-07-09       Impact factor: 4.562

6.  Urban landscape genomics identifies fine-scale gene flow patterns in an avian invasive.

Authors:  G W Low; B Chattopadhyay; K M Garg; M Irestedt; Pgp Ericson; G Yap; Q Tang; S Wu; F E Rheindt
Journal:  Heredity (Edinb)       Date:  2017-12-11       Impact factor: 3.821

7.  Intracoastal shipping drives patterns of regional population expansion by an invasive marine invertebrate.

Authors:  John A Darling; Leif-Matthias Herborg; Ian C Davidson
Journal:  Ecol Evol       Date:  2012-09-13       Impact factor: 2.912

8.  The effective population size of malaria mosquitoes: large impact of vector control.

Authors:  Giridhar Athrey; Theresa K Hodges; Michael R Reddy; Hans J Overgaard; Abrahan Matias; Frances C Ridl; Immo Kleinschmidt; Adalgisa Caccone; Michel A Slotman
Journal:  PLoS Genet       Date:  2012-12-13       Impact factor: 5.917

9.  High genetic diversity despite the potential for stepping-stone colonizations in an invasive species of gecko on Moorea, French Polynesia.

Authors:  Maria A Tonione; Natalie Reeder; Craig C Moritz
Journal:  PLoS One       Date:  2011-11-02       Impact factor: 3.240

10.  Are genes faster than crabs? Mitochondrial introgression exceeds larval dispersal during population expansion of the invasive crab Carcinus maenas.

Authors:  John A Darling; Yi-Hsin Erica Tsai; April M H Blakeslee; Joe Roman
Journal:  R Soc Open Sci       Date:  2014-10-15       Impact factor: 2.963

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