Literature DB >> 21555546

Lipid cubic phase as a membrane mimetic for integral membrane protein enzymes.

Dianfan Li1, Martin Caffrey.   

Abstract

The lipidic cubic mesophase has been used to crystallize important membrane proteins for high-resolution structure determination. To date, however, no integral membrane enzymes have yielded to this method, the in meso. For a crystal structure to be meaningful the target protein must be functional. Using the in meso method with a membrane enzyme requires that the protein is active in the mesophase that grows crystals. Because the cubic phase is sticky and viscous and is bicontinuous topologically, quantitatively assessing enzyme activity in meso is a challenge. Here, we describe a procedure for characterizing the catalytic properties of the integral membrane enzyme, diacylglycerol kinase, reconstituted into the bilayer of the lipidic cubic phase. The kinase activity of this elusive crystallographic target was monitored spectrophotometrically using a coupled assay in a high-throughput, 96-well plate format. In meso, the enzyme exhibits classic Michaelis-Menten kinetics and works with a range of lipid substrates. The fact that the enzyme and its lipid substrate and product remain confined to the porous mesophase while its water-soluble substrate and product are free to partition into the aqueous bathing solution suggests a general and convenient approach for characterizing membrane enzymes that function with lipids in a membrane-like environment. The distinctive rheology of the cubic phase means that a procedural step to physically separate substrate from product is not needed. Because of its open, bicontinuous nature, the cubic phase offers the added benefit that the protein is accessible for assay from both sides of the membrane.

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Year:  2011        PMID: 21555546      PMCID: PMC3102357          DOI: 10.1073/pnas.1101815108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Phase behavior of a monoacylglycerol: (myverol 18-99K)/water system.

Authors:  J Clogston; J Rathman; D Tomasko; H Walker; M Caffrey
Journal:  Chem Phys Lipids       Date:  2000-10       Impact factor: 3.329

2.  Lipidic cubic phase crystal structure of the photosynthetic reaction centre from Rhodobacter sphaeroides at 2.35A resolution.

Authors:  Gergely Katona; Ulf Andréasson; Ehud M Landau; Lars-Erik Andréasson; Richard Neutze
Journal:  J Mol Biol       Date:  2003-08-15       Impact factor: 5.469

3.  Escherichia coli diacylglycerol kinase is an alpha-helical polytopic membrane protein and can spontaneously insert into preformed lipid vesicles.

Authors:  C R Sanders; L Czerski; O Vinogradova; P Badola; D Song; S O Smith
Journal:  Biochemistry       Date:  1996-07-02       Impact factor: 3.162

4.  How to prepare membrane proteins for solid-state NMR: A case study on the alpha-helical integral membrane protein diacylglycerol kinase from E. coli.

Authors:  Mark Lorch; Salem Faham; Christoph Kaiser; Ingrid Weber; A James Mason; James U Bowie; Clemens Glaubitz
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

5.  sn-1,2-Diacylglycerol kinase of Escherichia coli. Mixed micellar analysis of the phospholipid cofactor requirement and divalent cation dependence.

Authors:  J P Walsh; R M Bell
Journal:  J Biol Chem       Date:  1986-05-15       Impact factor: 5.157

6.  sn-1,2-diacylglycerol kinase of Escherichia coli. Diacylglycerol analogues define specificity and mechanism.

Authors:  J P Walsh; L Fahrner; R M Bell
Journal:  J Biol Chem       Date:  1990-03-15       Impact factor: 5.157

7.  Functionality of a membrane protein in bicelles.

Authors:  L Czerski; C R Sanders
Journal:  Anal Biochem       Date:  2000-09-10       Impact factor: 3.365

8.  In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin.

Authors:  Vadim Cherezov; Wei Liu; Jeremy P Derrick; Binquan Luan; Aleksei Aksimentiev; Vsevolod Katritch; Martin Caffrey
Journal:  Proteins       Date:  2008-04

9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  Diglyceride kinase from Escherichia coli. Modulation of enzyme activity by glycosphingolipids.

Authors:  E Bohnenberger; H Sandermann
Journal:  Biochim Biophys Acta       Date:  1982-02-08
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  20 in total

1.  Host Lipid and Temperature as Important Screening Variables for Crystallizing Integral Membrane Proteins in Lipidic Mesophases. Trials with Diacylglycerol Kinase.

Authors:  Dianfan Li; Syed T A Shah; Martin Caffrey
Journal:  Cryst Growth Des       Date:  2013-07-03       Impact factor: 4.076

2.  Surfactant bilayers maintain transmembrane protein activity.

Authors:  Gamal Rayan; Vladimir Adrien; Myriam Reffay; Martin Picard; Arnaud Ducruix; Marc Schmutz; Wladimir Urbach; Nicolas Taulier
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

Review 3.  Tolerance to changes in membrane lipid composition as a selected trait of membrane proteins.

Authors:  Charles R Sanders; Kathleen F Mittendorf
Journal:  Biochemistry       Date:  2011-08-24       Impact factor: 3.162

4.  Membrane protein structure determination using crystallography and lipidic mesophases: recent advances and successes.

Authors:  Martin Caffrey; Dianfan Li; Abhiram Dukkipati
Journal:  Biochemistry       Date:  2012-07-31       Impact factor: 3.162

Review 5.  Prokaryotic diacylglycerol kinase and undecaprenol kinase.

Authors:  Wade D Van Horn; Charles R Sanders
Journal:  Annu Rev Biophys       Date:  2011-12-20       Impact factor: 12.981

Review 6.  NMR spectroscopy of lipidic cubic phases.

Authors:  Sunnia Rajput; Shenggen Yao; David W Keizer; Marc-Antoine Sani; Frances Separovic
Journal:  Biophys Rev       Date:  2021-11-11

7.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

8.  Cell-free expression and in meso crystallisation of an integral membrane kinase for structure determination.

Authors:  Coilín Boland; Dianfan Li; Syed Tasadaque Ali Shah; Stefan Haberstock; Volker Dötsch; Frank Bernhard; Martin Caffrey
Journal:  Cell Mol Life Sci       Date:  2014-07-11       Impact factor: 9.261

Review 9.  A comprehensive review of the lipid cubic phase or in meso method for crystallizing membrane and soluble proteins and complexes.

Authors:  Martin Caffrey
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-01       Impact factor: 1.056

10.  Crystal structure of the integral membrane diacylglycerol kinase.

Authors:  Dianfan Li; Joseph A Lyons; Valerie E Pye; Lutz Vogeley; David Aragão; Colin P Kenyon; Syed T A Shah; Christine Doherty; Margaret Aherne; Martin Caffrey
Journal:  Nature       Date:  2013-05-15       Impact factor: 49.962

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