Literature DB >> 21552479

Biochemistry of eukaryotic homologous recombination.

Wolf-Dietrich Heyer1.   

Abstract

The biochemistry of eukaryotic homologous recombination caught fire with the discovery that Rad51 is the eukaryotic homolog of the bacterial RecA and T4 UvsX proteins; and this field is still hot. The core reaction of homologous recombination, homology search and DNA strand invasion, along with the proteins catalyzing it, are conserved throughout evolution in principle. However, the increased complexity of eukaryotic genomes and the diversity of eukaryotic cell biology pose additional challenges to the recombination machinery. It is not surprising that this increase in complexity coincided with the evolution of new recombination proteins and novel support pathways, as well as changes in the properties of those eukaryotic recombination proteins that are evidently conserved in evolution. In humans, defects in homologous recombination lead to increased cancer predisposition, underlining the importance of this pathway for genomic stability and tumor suppression. This review will focus on the mechanisms of homologous recombination in eukaryotes as elucidated by the biochemical analysis of yeast and human proteins.

Entities:  

Year:  2007        PMID: 21552479      PMCID: PMC3087616          DOI: 10.1007/978-3-540-71021-9

Source DB:  PubMed          Journal:  Top Curr Genet        ISSN: 1610-2096


  173 in total

1.  Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins.

Authors:  Michael Lisby; Jacqueline H Barlow; Rebecca C Burgess; Rodney Rothstein
Journal:  Cell       Date:  2004-09-17       Impact factor: 41.582

Review 2.  Formin-induced nucleation of actin filaments.

Authors:  Sally H Zigmond
Journal:  Curr Opin Cell Biol       Date:  2004-02       Impact factor: 8.382

Review 3.  Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism.

Authors:  M S Wold
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

Review 4.  Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae.

Authors:  F Pâques; J E Haber
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

5.  Rad54 protein stimulates heteroduplex DNA formation in the synaptic phase of DNA strand exchange via specific interactions with the presynaptic Rad51 nucleoprotein filament.

Authors:  J A Solinger; G Lutz; T Sugiyama; S C Kowalczykowski; W D Heyer
Journal:  J Mol Biol       Date:  2001-04-13       Impact factor: 5.469

6.  Rad54, a Swi2/Snf2-like recombinational repair protein, disassembles Rad51:dsDNA filaments.

Authors:  Jachen A Solinger; Konstantin Kiianitsa; Wolf-Dietrich Heyer
Journal:  Mol Cell       Date:  2002-11       Impact factor: 17.970

7.  Sws1 is a conserved regulator of homologous recombination in eukaryotic cells.

Authors:  Victoria Martín; Charly Chahwan; Hui Gao; Véronique Blais; James Wohlschlegel; John R Yates; Clare H McGowan; Paul Russell
Journal:  EMBO J       Date:  2006-05-18       Impact factor: 11.598

8.  The BRCA2 homologue Brh2 nucleates RAD51 filament formation at a dsDNA-ssDNA junction.

Authors:  Haijuan Yang; Qiubai Li; Jie Fan; William K Holloman; Nikola P Pavletich
Journal:  Nature       Date:  2005-02-10       Impact factor: 49.962

9.  BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure.

Authors:  Haijuan Yang; Philip D Jeffrey; Julie Miller; Elspeth Kinnucan; Yutong Sun; Nicolas H Thoma; Ning Zheng; Phang-Lang Chen; Wen-Hwa Lee; Nikola P Pavletich
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

10.  Recovery from checkpoint-mediated arrest after repair of a double-strand break requires Srs2 helicase.

Authors:  Moreshwar B Vaze; Achille Pellicioli; Sang Eun Lee; Grzegorz Ira; Giordano Liberi; Ayelet Arbel-Eden; Marco Foiani; James E Haber
Journal:  Mol Cell       Date:  2002-08       Impact factor: 17.970

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  14 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

2.  Genomic variation in natural populations of Drosophila melanogaster.

Authors:  Charles H Langley; Kristian Stevens; Charis Cardeno; Yuh Chwen G Lee; Daniel R Schrider; John E Pool; Sasha A Langley; Charlyn Suarez; Russell B Corbett-Detig; Bryan Kolaczkowski; Shu Fang; Phillip M Nista; Alisha K Holloway; Andrew D Kern; Colin N Dewey; Yun S Song; Matthew W Hahn; David J Begun
Journal:  Genetics       Date:  2012-06-05       Impact factor: 4.562

3.  Who's who in human recombination: BRCA2 and RAD52.

Authors:  Jie Liu; Wolf-Dietrich Heyer
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-28       Impact factor: 11.205

4.  Structural evidence for an in trans base selection mechanism involving Loop1 in polymerase μ at an NHEJ double-strand break junction.

Authors:  Jérôme Loc'h; Christina A Gerodimos; Sandrine Rosario; Mustafa Tekpinar; Michael R Lieber; Marc Delarue
Journal:  J Biol Chem       Date:  2019-05-28       Impact factor: 5.157

5.  Mismatch repair protein hMSH2-hMSH6 recognizes mismatches and forms sliding clamps within a D-loop recombination intermediate.

Authors:  Masayoshi Honda; Yusuke Okuno; Sarah R Hengel; Juana V Martín-López; Christopher P Cook; Ravindra Amunugama; Randal J Soukup; Shyamal Subramanyam; Richard Fishel; Maria Spies
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-06       Impact factor: 11.205

Review 6.  Error-Prone Repair of DNA Double-Strand Breaks.

Authors:  Kasey Rodgers; Mitch McVey
Journal:  J Cell Physiol       Date:  2016-01       Impact factor: 6.384

7.  Visualization and quantification of nascent RAD51 filament formation at single-monomer resolution.

Authors:  Andrea Candelli; Jan Thomas Holthausen; Martin Depken; Ineke Brouwer; Mariëlla A M Franker; Margherita Marchetti; Iddo Heller; Stéphanie Bernard; Edwige B Garcin; Mauro Modesti; Claire Wyman; Gijs J L Wuite; Erwin J G Peterman
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

8.  Polymorphism within the distal RAD51 gene promoter is associated with colorectal cancer in a Polish population.

Authors:  Bartosz Mucha; Jacek Kabzinski; Adam Dziki; Karolina Przybylowska-Sygut; Andrzej Sygut; Ireneusz Majsterek; Lukasz Dziki
Journal:  Int J Clin Exp Pathol       Date:  2015-09-01

Review 9.  From yeast to mammals: recent advances in genetic control of homologous recombination.

Authors:  Yoav Karpenshif; Kara A Bernstein
Journal:  DNA Repair (Amst)       Date:  2012-08-11

10.  Characterization of the recombination activities of the Entamoeba histolytica Rad51 recombinase.

Authors:  Andrew A Kelso; Steven D Goodson; Suchitra Chavan; Amanda F Say; Audrey Turchick; Deepti Sharma; LeAnna L Ledford; Erin Ratterman; Kristin Leskoske; Ada V King; Christopher C Attaway; Yura Bandera; Stephen H Foulger; Alexander V Mazin; Lesly A Temesvari; Michael G Sehorn
Journal:  Mol Biochem Parasitol       Date:  2016-09-24       Impact factor: 1.759

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