Literature DB >> 21551312

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.

Nicholas V Coleman1, Neil L Wilson, Kerrie Barry, Thomas S Brettin, David C Bruce, Alex Copeland, Eileen Dalin, John C Detter, Tijana Glavina Del Rio, Lynne A Goodwin, Nancy M Hammon, Shunsheng Han, Loren J Hauser, Sanjay Israni, Edwin Kim, Nikolaos Kyrpides, Miriam L Land, Alla Lapidus, Frank W Larimer, Susan Lucas, Sam Pitluck, Paul Richardson, Jeremy Schmutz, Roxanne Tapia, Sue Thompson, Hope N Tice, Jim C Spain, James G Gossett, Timothy E Mattes.   

Abstract

Nocardioides sp. strain JS614 grows on ethene and vinyl chloride (VC) as sole carbon and energy sources and is of interest for bioremediation and biocatalysis. Sequencing of the complete genome of JS614 provides insight into the genetic basis of alkene oxidation, supports ongoing research into the physiology and biochemistry of growth on ethene and VC, and provides biomarkers to facilitate detection of VC/ethene oxidizers in the environment. This is the first genome sequence from the genus Nocardioides and the first genome of a VC/ethene-oxidizing bacterium.

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Year:  2011        PMID： 21551312      PMCID： PMC3133255          DOI： 10.1128/JB.05109-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  28 in total

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Journal:  Science       Date:  2002-07-25       Impact factor: 47.728

3.  Improved microbial gene identification with GLIMMER.

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4.  Isolation and characterization of alkane-utilizing Nocardioides sp. strain CF8.

Authors:  N Hamamura; D J Arp
Journal:  FEMS Microbiol Lett       Date:  2000-05-01       Impact factor: 2.742

5.  Characterization of JP-7 jet fuel degradation by the bacterium Nocardioides luteus strain BAFB.

Authors:  Carina M Jung; Chris Broberg; Jason Giuliani; Larry L Kirk; Larry F Hanne
Journal:  J Basic Microbiol       Date:  2002       Impact factor: 2.281

6.  Extending the alkene substrate range of vinyl chloride utilizing Nocardioides sp. strain JS614 with ethene oxide.

Authors:  Anne E Taylor; Daniel J Arp; Peter J Bottomley; Lewis Semprini
Journal:  Appl Microbiol Biotechnol       Date:  2010-06-27       Impact factor: 4.813

7.  Characterization of S-triazine herbicide metabolism by a Nocardioides sp. isolated from agricultural soils.

Authors:  E Topp; W M Mulbry; H Zhu; S M Nour; D Cuppels
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

8.  Characterization of an isolate that uses vinyl chloride as a growth substrate under aerobic conditions.

Authors:  M F Verce; R L Ulrich; D L Freedman
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

9.  Gaseous alkene biotransformation and enantioselective epoxyalkane formation by Nocardioides sp. strain JS614.

Authors:  Carmen R Owens; Julie K Karceski; Timothy E Mattes
Journal:  Appl Microbiol Biotechnol       Date:  2009-05-09       Impact factor: 4.813

Review 10.  Vinyl chloride: still a cause for concern.

Authors:  J Kielhorn; C Melber; U Wahnschaffe; A Aitio; I Mangelsdorf
Journal:  Environ Health Perspect       Date:  2000-07       Impact factor: 9.031
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3.  Epoxyalkane:Coenzyme M Transferase Gene Diversity and Distribution in Groundwater Samples from Chlorinated-Ethene-Contaminated Sites.

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Review 4.  Microbial degradation of chloroethenes: a review.

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5.  Genome-wide bioinformatics analysis of steroid metabolism-associated genes in Nocardioides simplex VKM Ac-2033D.

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Journal:  Curr Genet       Date:  2016-02-01       Impact factor: 3.886

6.  Identification of genes coding for putative wax ester synthase/diacylglycerol acyltransferase enzymes in terrestrial and marine environments.

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7.  Analysis of the Genome of the Heavy Metal Resistant and Hydrocarbon-Degrading Rhizospheric Pseudomonas qingdaonensis ZCR6 Strain and Assessment of Its Plant-Growth-Promoting Traits.

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Review 8.  Synthetic Biology Approaches to Hydrocarbon Biosensors: A Review.

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  8 in total

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