Literature DB >> 21551305

Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring.

Li-Jun Liu1, Xiao-Yan You, Huajun Zheng, Shengyue Wang, Cheng-Ying Jiang, Shuang-Jiang Liu.   

Abstract

The genome of the metal sulfide-oxidizing, thermoacidophilic strain Metallosphaera cuprina Ar-4 has been completely sequenced and annotated. Originally isolated from a sulfuric hot spring, strain Ar-4 grows optimally at 65°C and a pH of 3.5. The M. cuprina genome has a 1,840,348-bp circular chromosome (2,029 open reading frames [ORFs]) and is 16% smaller than the previously sequenced Metallosphaera sedula genome. Compared to the M. sedula genome, there are no counterpart genes in the M. cuprina genome for about 480 ORFs in the M. sedula genome, of which 243 ORFs are annotated as hypothetical protein genes. Still, there are 233 ORFs uniquely occurring in M. cuprina. Genome annotation supports that M. cuprina lives a facultative life on CO(2) and organics and obtains energy from oxidation of sulfidic ores and reduced inorganic sulfuric compounds.

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Year:  2011        PMID: 21551305      PMCID: PMC3133273          DOI: 10.1128/JB.05038-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  12 in total

1.  Comparative study on the selective chalcopyrite bioleaching of a molybdenite concentrate with mesophilic and thermophilic bacteria.

Authors:  P Romano; M L Blázquez; F J Alguacil; J A Muñoz; A Ballester; F González
Journal:  FEMS Microbiol Lett       Date:  2001-03-01       Impact factor: 2.742

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  Metallosphaera cuprina sp. nov., an acidothermophilic, metal-mobilizing archaeon.

Authors:  Li-Jun Liu; Xiao-Yan You; Xu Guo; Shuang-Jiang Liu; Cheng-Ying Jiang
Journal:  Int J Syst Evol Microbiol       Date:  2010-11-05       Impact factor: 2.747

4.  Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature.

Authors:  T D Brock; K M Brock; R T Belly; R L Weiss
Journal:  Arch Mikrobiol       Date:  1972

5.  Biooxidation capacity of the extremely thermoacidophilic archaeon metallosphaera sedula under bioenergetic challenge

Authors: 
Journal:  Biotechnol Bioeng       Date:  1998-06-20       Impact factor: 4.530

6.  Terminal oxidase diversity and function in "Metallosphaera yellowstonensis": gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the sulfolobales.

Authors:  M A Kozubal; M Dlakic; R E Macur; W P Inskeep
Journal:  Appl Environ Microbiol       Date:  2011-01-14       Impact factor: 4.792

7.  Sulfur oxidation activities of pure and mixed thermophiles and sulfur speciation in bioleaching of chalcopyrite.

Authors:  Wei Zhu; Jin-Lan Xia; Yi Yang; Zhen-yuan Nie; Lei Zheng; Chen-yan Ma; Rui-yong Zhang; An-an Peng; Lu Tang; Guan-zhou Qiu
Journal:  Bioresour Technol       Date:  2010-11-26       Impact factor: 9.642

8.  Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.

Authors:  William P Inskeep; Douglas B Rusch; Zackary J Jay; Markus J Herrgard; Mark A Kozubal; Toby H Richardson; Richard E Macur; Natsuko Hamamura; Ryan deM Jennings; Bruce W Fouke; Anna-Louise Reysenbach; Frank Roberto; Mark Young; Ariel Schwartz; Eric S Boyd; Jonathan H Badger; Eric J Mathur; Alice C Ortmann; Mary Bateson; Gill Geesey; Marvin Frazier
Journal:  PLoS One       Date:  2010-03-19       Impact factor: 3.240

9.  Identification of components of electron transport chains in the extremely thermoacidophilic crenarchaeon Metallosphaera sedula through iron and sulfur compound oxidation transcriptomes.

Authors:  Kathryne S Auernik; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2008-10-17       Impact factor: 4.792

10.  Probing the archaeal diversity of a mixed thermophilic bioleaching culture by TGGE and FISH.

Authors:  Deirdre Mikkelsen; Ulrike Kappler; Alastair G McEwan; Lindsay I Sly
Journal:  Syst Appl Microbiol       Date:  2009-06-21       Impact factor: 4.022

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  14 in total

Review 1.  Metal-tolerant thermophiles: metals as electron donors and acceptors, toxicity, tolerance and industrial applications.

Authors:  Preeti Ranawat; Seema Rawat
Journal:  Environ Sci Pollut Res Int       Date:  2017-12-14       Impact factor: 4.223

2.  A thermoacidophile-specific protein family, DUF3211, functions as a fatty acid carrier with novel binding mode.

Authors:  Takuya Miyakawa; Yoriko Sawano; Ken-ichi Miyazono; Yumiko Miyauchi; Ken-ichi Hatano; Masaru Tanokura
Journal:  J Bacteriol       Date:  2013-07-08       Impact factor: 3.490

3.  Uranium extremophily is an adaptive, rather than intrinsic, feature for extremely thermoacidophilic Metallosphaera species.

Authors:  Arpan Mukherjee; Garrett H Wheaton; Paul H Blum; Robert M Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-25       Impact factor: 11.205

Review 4.  Genomic attributes of thermophilic and hyperthermophilic bacteria and archaea.

Authors:  Digvijay Verma; Vinay Kumar; Tulasi Satyanarayana
Journal:  World J Microbiol Biotechnol       Date:  2022-06-13       Impact factor: 3.312

5.  Role of an archaeal PitA transporter in the copper and arsenic resistance of Metallosphaera sedula, an extreme thermoacidophile.

Authors:  Samuel McCarthy; Chenbing Ai; Garrett Wheaton; Rahul Tevatia; Valerie Eckrich; Robert Kelly; Paul Blum
Journal:  J Bacteriol       Date:  2014-08-04       Impact factor: 3.490

6.  Metal resistance and lithoautotrophy in the extreme thermoacidophile Metallosphaera sedula.

Authors:  Yukari Maezato; Tyler Johnson; Samuel McCarthy; Karl Dana; Paul Blum
Journal:  J Bacteriol       Date:  2012-10-12       Impact factor: 3.490

7.  Quartet analysis of putative horizontal gene transfer in Crenarchaeota.

Authors:  Travers H Ching; Brandon A Yoza; Qing X Li
Journal:  J Mol Evol       Date:  2013-12-18       Impact factor: 2.395

Review 8.  The Proposed Molecular Mechanisms Used by Archaea for Fe(III) Reduction and Fe(II) Oxidation.

Authors:  Yiran Dong; Yawei Shan; Kemin Xia; Liang Shi
Journal:  Front Microbiol       Date:  2021-07-01       Impact factor: 5.640

9.  A novel highly thermostable xylanase stimulated by Ca2+ from Thermotoga thermarum: cloning, expression and characterization.

Authors:  Hao Shi; Yu Zhang; Xun Li; Yingjuan Huang; Liangliang Wang; Ye Wang; Huaihai Ding; Fei Wang
Journal:  Biotechnol Biofuels       Date:  2013-02-18       Impact factor: 6.040

10.  An archaeal protein evolutionarily conserved in prokaryotes is a zinc-dependent metalloprotease.

Authors:  Yongmei Hu; Nan Peng; Wenyuan Han; Yuxia Mei; Zhengjun Chen; Xu Feng; Yun Xiang Liang; Qunxin She
Journal:  Biosci Rep       Date:  2012-12       Impact factor: 3.840

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