Literature DB >> 21542600

Inverse virtual screening of antitumor targets: pilot study on a small database of natural bioactive compounds.

Gianluigi Lauro1, Adriana Romano, Raffaele Riccio, Giuseppe Bifulco.   

Abstract

An inverse virtual screening in silico approach has been applied to natural bioactive molecules to screen their efficacy against proteins involved in cancer processes, with the aim of directing future experimental assays. Docking studies were performed on a panel of 126 protein targets extracted from the Protein Data Bank, to analyze their possible interactions with a small library of 43 bioactive compounds. Analysis of the molecular docking results was performed through the use of tables containing energy data organized in a matrix. The application of this approach may facilitate the prediction of the activity of unknown ligands for known targets involved in the development of cancer and could be applied to other models based on different libraries of ligands and different panels of targets.

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Year:  2011        PMID: 21542600     DOI: 10.1021/np100935s

Source DB:  PubMed          Journal:  J Nat Prod        ISSN: 0163-3864            Impact factor:   4.050


  22 in total

1.  Discovery and synthesis of namalide reveals a new anabaenopeptin scaffold and peptidase inhibitor.

Authors:  Pradeep Cheruku; Alberto Plaza; Gianluigi Lauro; Jessica Keffer; John R Lloyd; Giuseppe Bifulco; Carole A Bewley
Journal:  J Med Chem       Date:  2012-01-05       Impact factor: 7.446

2.  Add-On therapy with Chinese herb medicine Bo-Er-Ning capsule (BENC) improves outcomes of gastric cancer patients: a randomized clinical trial followed with bioinformatics-assisted mechanism study.

Authors:  Boyu Pan; Jingyuan Zang; Jie He; Zhen Wang; Liren Liu
Journal:  Am J Cancer Res       Date:  2018-06-01       Impact factor: 6.166

Review 3.  Shifting from the single to the multitarget paradigm in drug discovery.

Authors:  José L Medina-Franco; Marc A Giulianotti; Gregory S Welmaker; Richard A Houghten
Journal:  Drug Discov Today       Date:  2013-01-20       Impact factor: 7.851

4.  DockoMatic 2.0: high throughput inverse virtual screening and homology modeling.

Authors:  Casey Bullock; Nic Cornia; Reed Jacob; Andrew Remm; Thomas Peavey; Ken Weekes; Chris Mallory; Julia T Oxford; Owen M McDougal; Timothy L Andersen
Journal:  J Chem Inf Model       Date:  2013-08-08       Impact factor: 4.956

5.  Docking-based virtual screening of Brazilian natural compounds using the OOMT as the pharmacological target database.

Authors:  Ana Paula Carregal; Flávia V Maciel; Juliano B Carregal; Bianca Dos Reis Santos; Alisson Marques da Silva; Alex G Taranto
Journal:  J Mol Model       Date:  2017-03-11       Impact factor: 1.810

6.  The isoprenoid derivative N6 -benzyladenosine CM223 exerts antitumor effects in glioma patient-derived primary cells through the mevalonate pathway.

Authors:  Elena Ciaglia; Manuela Grimaldi; Mario Abate; Mario Scrima; Manuela Rodriquez; Chiara Laezza; Roberta Ranieri; Simona Pisanti; Pierangela Ciuffreda; Clementina Manera; Patrizia Gazzerro; Anna Maria D'Ursi; Maurizio Bifulco
Journal:  Br J Pharmacol       Date:  2017-06-11       Impact factor: 8.739

7.  Phytochemical Analysis of the Methanolic Extract and Essential Oil from Leaves of Industrial Hemp Futura 75 Cultivar: Isolation of a New Cannabinoid Derivative and Biological Profile Using Computational Approaches.

Authors:  Simona De Vita; Claudia Finamore; Maria Giovanna Chini; Gabriella Saviano; Vincenzo De Felice; Simona De Marino; Gianluigi Lauro; Agostino Casapullo; Francesca Fantasma; Federico Trombetta; Giuseppe Bifulco; Maria Iorizzi
Journal:  Plants (Basel)       Date:  2022-06-24

8.  AUDocker LE: A GUI for virtual screening with AUTODOCK Vina.

Authors:  Gaddam Sandeep; Kurre Purna Nagasree; Muppaneni Hanisha; Muthyala Murali Krishna Kumar
Journal:  BMC Res Notes       Date:  2011-10-25

9.  Sequence selectivity of the cleavage sites induced by topoisomerase I inhibitors: a molecular dynamics study.

Authors:  Fung-Ming Siu; Yves Pommier
Journal:  Nucleic Acids Res       Date:  2013-09-09       Impact factor: 16.971

10.  Inhibition of Wnt/β-Catenin pathway and Histone acetyltransferase activity by Rimonabant: a therapeutic target for colon cancer.

Authors:  Maria Chiara Proto; Donatella Fiore; Chiara Piscopo; Silvia Franceschelli; Valentina Bizzarro; Chiara Laezza; Gianluigi Lauro; Alessandra Feoli; Alessandra Tosco; Giuseppe Bifulco; Gianluca Sbardella; Maurizio Bifulco; Patrizia Gazzerro
Journal:  Sci Rep       Date:  2017-09-15       Impact factor: 4.379

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