Literature DB >> 21537960

Study of the betulin molecule in a water environment; ab initio and molecular simulation calculations.

Miroslav Pospíšil1, Petr Kovář, Robert Vácha, Michal Svoboda.   

Abstract

Ab initio and molecular simulation methods were used in calculations of the neutral individual betulin molecule, and molecular simulations were used to optimize the betulin molecule immersed in various amounts of water. Individual betulin was optimized in different force fields to find the one exhibiting best agreement with ab initio calculations obtained in the Gaussian03 program. Dihedral torsions of active groups of betulin were determined for both procedures, and related calculated structures were compared successfully. The selected force field was used for subsequent optimization of betulin in a water environment, and a conformational search was performed using quench molecular dynamics. The total energies of betulin and its interactions in water bulk were calculated, and the influence of water on betulin structure was investigated.

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Year:  2011        PMID: 21537960     DOI: 10.1007/s00894-011-1055-y

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  23 in total

1.  Antimicrobial activity and constituents of Coccoloba acrostichoides.

Authors:  Betânia Barros Cota; Alaíde Braga de Oliveira; José Dias de Souza-Filho; Fernão Castro Braga
Journal:  Fitoterapia       Date:  2003-12       Impact factor: 2.882

2.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

3.  Synthesis and anticancer activity of novel betulinic acid and betulin derivatives.

Authors:  Harish Kommera; Goran N Kaluderović; Jutta Kalbitz; Reinhard Paschke
Journal:  Arch Pharm (Weinheim)       Date:  2010-08       Impact factor: 3.751

4.  Cytotoxic triterpenes from the twigs of Celtis philippinensis.

Authors:  Bang Yeon Hwang; Hee-Byung Chai; Leonardus B S Kardono; Soedarsono Riswan; Norman R Farnsworth; Geoffrey A Cordell; John M Pezzuto; A Douglas Kinghorn
Journal:  Phytochemistry       Date:  2003-01       Impact factor: 4.072

5.  Synthesis of betulin derivatives and the determination of their relative lipophilicities using reversed-phase thin-layer chromatography.

Authors:  Jacek Achrem-Achremowicz; Elzbieta Kepczyńska; Marek Zylewski; Zbigniew Janeczko
Journal:  Biomed Chromatogr       Date:  2010-03       Impact factor: 1.902

6.  Inhibitory effect of the natural product betulin and its derivatives against the intracellular bacterium Chlamydia pneumoniae.

Authors:  Olli Salin; Sami Alakurtti; Leena Pohjala; Antti Siiskonen; Viola Maass; Matthias Maass; Jari Yli-Kauhaluoma; Pia Vuorela
Journal:  Biochem Pharmacol       Date:  2010-07-06       Impact factor: 5.858

Review 7.  Pharmacological properties of the ubiquitous natural product betulin.

Authors:  Sami Alakurtti; Taru Mäkelä; Salme Koskimies; Jari Yli-Kauhaluoma
Journal:  Eur J Pharm Sci       Date:  2006-04-29       Impact factor: 4.384

8.  Cytotoxic lupane-type triterpenoids from Acacia mellifera.

Authors:  Charles Mutai; Dennis Abatis; Constantinos Vagias; Dimitri Moreau; Christos Roussakis; Vassilios Roussis
Journal:  Phytochemistry       Date:  2004-04       Impact factor: 4.072

9.  Lupane triterpenes and derivatives with antiviral activity.

Authors:  L A Baltina; O B Flekhter; L R Nigmatullina; E I Boreko; N I Pavlova; S N Nikolaeva; O V Savinova; G A Tolstikov
Journal:  Bioorg Med Chem Lett       Date:  2003-10-20       Impact factor: 2.823

10.  Anti-AIDS agents. 34. Synthesis and structure-activity relationships of betulin derivatives as anti-HIV agents.

Authors:  I C Sun; H K Wang; Y Kashiwada; J K Shen; L M Cosentino; C H Chen; L M Yang; K H Lee
Journal:  J Med Chem       Date:  1998-11-05       Impact factor: 7.446

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