| Literature DB >> 21537091 |
M Na-Ubol1, P Srimanote, M Chongsa-Nguan, N Indrawattana, N Sookrung, P Tapchaisri, S Yamazaki, L Bodhidatta, B Eampokalap, H Kurazono, H Hayashi, G B Nair, Y Takeda, W Chaicumpa.
Abstract
BACKGROUND &Entities:
Mesh:
Substances:
Year: 2011 PMID: 21537091 PMCID: PMC3103171
Source DB: PubMed Journal: Indian J Med Res ISSN: 0971-5916 Impact factor: 2.375
V. cholerae O1 strains isolated from Thailand during 1986-2009
| Year of isolation (n) | Strain no. | Serotype | Phenotype | Genotype | Biotype (see also | Number of strain(s)/total number of strain(s) of the year | |||
|---|---|---|---|---|---|---|---|---|---|
| PB | CCA | VP | |||||||
| 1986 (5) | 1-2 | Inaba | R | + | + | E | E | El Tor | 2/5 |
| 3 | Inaba | R | + | + | E | E+C | El Tor | 1/5 | |
| 4 | Inaba | S | - | + | E | E | Hybrid group 1 | 1/5 | |
| 5 | Inaba | R | + | + | E+C | E | Unclassified group 1 | 1/5 | |
| 1987 (1) | 6 | Inaba | R | + | + | E | E | El Tor | 1/1 |
| 1989 (2) | 7 | Inaba | R | - | + | E+C | E+C | Hybrid group 2 | 1/2 |
| 8 | Inaba | S | + | + | E | E+C | Hybrid group 3 | 1/2 | |
| 1990 (13) | 9-12 | Inaba | R | + | + | E | E+C | El Tor | 4/13 |
| 13-16 | Ogawa | R | + | + | E | E | El Tor | 4/13 | |
| 17-18 | Inaba | R | + | + | E+C | E+C | Unclassified group 2 | 2/13 | |
| 19-21 | Ogawa | R | + | + | E+C | E | Unclassified group 1 | 3/13 | |
| 1991 (4) | 22 | Ogawa | R | + | + | E | E | El Tor | 1/4 |
| 23-25 | Ogawa | R | + | + | E+C | E | Unclassified group 1 | 3/4 | |
| 1992 (11) | 26 | Inaba | R | + | + | E | E+C | El Tor | 1/11 |
| 27 | Inaba | S | + | + | E | E | Hybrid group 4 | 1/11 | |
| 28 | Ogawa | R | + | + | E | E | El Tor | 1/11 | |
| 29 | Ogawa | R | + | + | E+C | E | Unclassified group 1 | 1/11 | |
| 30-33 | Ogawa | R | + | + | C | E+C | El Tor variant | 4/11 | |
| 34-36 | Ogawa | R | - | + | C | E+C | Hybrid group 5 | 3/11 | |
| 1993 (9) | 37-38 | Inaba | R | + | + | C | E+C | El Tor variant | 2/9 |
| 39-43 | Ogawa | R | + | + | C | E+C | El Tor variant | 5/9 | |
| 44 | Ogawa | R | + | - | C | E+C | Hybrid group 6 | 1/9 | |
| 45 | Ogawa | R | + | + | C | C | El Tor variant | 1/9 | |
| 1994 (7) | 46 | Inaba | R | + | - | C | E+C | Hybrid group 6 | 1/7 |
| 47-51 | Ogawa | R | + | + | C | E+C | El Tor variant | 5/7 | |
| 52 | Ogawa | S | + | + | C | E+C | Hybrid group 7 | 1/7 | |
| 1995 (11) | 53-62 | Ogawa | R | + | + | C | E+C | El Tor variant | 10/11 |
| 63 | Ogawa | R | + | - | C | E+C | Hybrid group 6 | 1/11 | |
| 1996 (3) | 64-65 | Ogawa | R | + | + | C | E+C | El Tor variant | 2/3 |
| 66 | Ogawa | S | + | + | C | E+C | Hybrid group 7 | 1/3 | |
| 1997 (3) | 67 | Ogawa | R | + | + | C | E+C | El Tor variant | 1/3 |
| 68-69 | Ogawa | R | + | + | C | C | El Tor variant | 2/3 | |
| 1998 (2) | 70-71 | Ogawa | R | + | + | C | C | El Tor variant | 2/2 |
| 1999 (179) | 72-78 | Inaba | R | + | + | C | C | El Tor variant | 7/179 |
| 79-83 | Ogawa | R | + | + | C | E+C | El Tor variant | 5/179 | |
| 84-85 | Ogawa | R | + | - | C | E+C | Hybrid group 6 | 2/179 | |
| 86-115 | Ogawa | R | + | - | C | C | Hybrid group 8 | 30/179 | |
| 116-247 | Ogawa | R | + | + | C | C | El Tor variant | 132/179 | |
| 248 | Ogawa | R | - | + | C | C | Hybrid group 9 | 1/179 | |
| 249 | Ogawa | R | - | - | C | C | Hybrid group 10 | 1/179 | |
| 250 | Ogawa | S | + | + | C | C | Hybrid group 11 | 1/179 | |
| 2000 (21) | 251-270 | Ogawa | R | + | + | C | C | El Tor variant | 20/21 |
| 271 | Ogawa | R | + | - | C | C | Hybrid group 8 | 1/21 | |
| 2001 (27) | 272-294 | Inaba | R | + | + | C | C | El Tor variant | 23/27 |
| 295-298 | Inaba | R | + | - | C | C | Hybrid group 8 | 4/27 | |
| 2002 (13) | 299-306 | Inaba | R | + | + | C | C | El Tor variant | 8/13 |
| 307 | Inaba | R | + | - | C | C | Hybrid group 8 | 1/13 | |
| 308-310 | Inaba | S | + | + | C | C | Hybrid group 11 | 3/13 | |
| 311 | Ogawa | R | + | + | C | C | El Tor variant | 1/13 | |
| 2003 (8) | 312-315 | Inaba | R | + | + | C | C | El Tor variant | 4/8 |
| 316 | Inaba | R | + | - | C | C | Hybrid group 8 | 1/8 | |
| 317 | Inaba | S | + | + | C | C | Hybrid group 11 | 1/8 | |
| 318 | Inaba | S | + | - | C | C | Hybrid group 12 | 1/8 | |
| 319 | Inaba | S | - | + | C | C | Hybrid group 13 | 1/8 | |
| 2004 (9) | 320-324 | Inaba | R | + | + | C | C | El Tor variant | 5/9 |
| 325-327 | Inaba | R | + | - | C | C | Hybrid group 8 | 3/9 | |
| 328 | Inaba | S | + | - | C | C | Hybrid group 12 | 1/9 | |
| 2009 (2) | 329-330 | Ogawa | R | + | + | C | C | El Tor variant | 2/2 |
n, total number of strain(s) of the indicated year; PB, susceptibility to 50 units of polymyxin B; CCA, chicken red blood cell agglutination; VP, Voges-Proskauer test; MAMA, mismatch amplification mutation assay; R, resistant; S, sensitive; +, positive; -, negative; C, classical; E, El Tor
V. cholerae O1 reference strains isolated from various countries
| No. | Name of isolate (n=19) | Year of isolation | Country of origin | Serotype | Phenotype | Genotype | Biotype | Originally identified biotype | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| PB | CCA | VP | |||||||||
| 1 | 569B | 1948 | India | Inaba | S | - | - | C | C | Classical | Classical |
| 2 | GP71 | 1971 | India | Ogawa | R | + | + | C | E | El Tor variant | El Tor |
| 3 | N16961 | 1975 | Bangladesh | Inaba | R | + | + | E | E | El Tor | El Tor |
| 4 | 2463-78 | 1978 | Australia | Inaba | R | - | - | C | C | Hybrid | El Tor |
| 5 | GP156 | 1979 | Australia | Ogawa | R | + | - | C | E | Hybrid | El Tor |
| 6 | 2164-88 | 1988 | United states | Inaba | R | + | + | C | C | El Tor variant | El Tor |
| 7 | 295/33 | 1990 | Thailand | Ogawa | R | - | + | E+C | E | Hybrid | El Tor |
| 8 | C6706 | 1991 | Peru | Inaba | R | + | + | E+C | E | Hybrid | El Tor |
| 9 | C7754 | 1991 | Romania | Ogawa | R | + | - | C | E+C | Hybrid | El Tor |
| 10 | MJ1485 | 1994 | Bangladesh | Inaba | R | - | + | C | C | Hybrid | El Tor |
| 11 | B33 | 2004 | Mozambique | Ogawa | R | + | - | C | C | Hybrid | El Tor |
| 12 | AR15493 | Unknown | Bangladesh | Inaba | R | + | + | C | E | El Tor variant | El Tor |
| 13 | AR15425 | Unknown | Bangladesh | Inaba | R | + | + | C | E | El Tor variant | El Tor |
| 14 | G27875 | Unknown | India (NICED) | Ogawa | R | + | + | C | E | El Tor variant | El Tor |
| 15 | SC11 | Unknown | India (NICED) | Ogawa | R | + | + | C | E | El Tor variant | El Tor |
| 16 | GP12 | Unknown | India | Ogawa | R | + | - | C | E | Hybrid | El Tor |
| 17 | AS230 | Unknown | India | Ogawa | R | + | + | C | E | El Tor variant | El Tor |
| 18 | AS231 | Unknown | India | Ogawa | R | + | + | C | E | El Tor variant | El Tor |
| 19 | AS233 | Unknown | India | Ogawa | R | - | + | C | E | Hybrid | El Tor |
PB, susceptibility to 50 units of polymyxin B; CCA, chicken red blood cell agglutination;, VP, Voges-Proskauer test; R, resistant; S, sensitive; +, positive; -, negative; C, classical; E, El Tor
PCR primers for the study of V. cholerae O1 genes
| Gene (s) | Primer sequence | Size of PCR amplicon (bp) | PCR condition | Reference | |||||
|---|---|---|---|---|---|---|---|---|---|
| Initial denaturation | Denaturation | Annealing | Extension | Final extension | No. of cycles | ||||
| Simple PCR | |||||||||
| Forward: GCACCATGATTTAAGATGCTC | 501 (El Tor) | 94°C, 5 min | 94°C, 60 s | 58°C, 60 s | 72°C, 90 s | 72°C, 7 min | 30 | 22 | |
| Reverse: TCGAGTTGTAATTCATCAAGAGTG | |||||||||
| Forward: CTTCTCATCAGCAAAGCCTCCATC | 474 (Classical) | 94°C, 5 min | 94°C, 60 s | 64°C, 60 s | 72°C, 90 s | 72°C, 7 min | 30 | 22 | |
| Reverse: TCGAGTTGTAATTCATCAAGAGTG | |||||||||
| MAMA-PCR | |||||||||
| Forward: ACTATCTTCAGCATATGCACATGG | 96°C, 2 min | 96°C, 10 s | 55°C, 10 s | 72°C, 30 s | 72°C, 2 min | 25 | 21 | ||
| Reverse for El Tor: CTGGTACTTCTACTTGAAACA | |||||||||
| Reverse for classical: CTGGTACTTCTACTTGAAACG | |||||||||
| MAMA-PCR, mismatch amplification mutation assay-PCR | |||||||||
Biotypes of the 330 V. cholerae Thailand clinical strains
| Biotype | Genotype | Phenotype | |||
|---|---|---|---|---|---|
| PB | CCA | VP | |||
| Classical | C | C | S | - | - |
| El Tor | E | E | R | + | + |
| El Tor | E | E+C | R | + | + |
| Hybrid group 1 | E | E | S | - | + |
| Hybrid group 2 | E+C | E+C | R | - | + |
| Hybrid group 3 | E | E+C | S | + | + |
| Hybrid group 4 | E | E | S | + | + |
| Hybrid group 5 | C | E+C | R | - | + |
| Hybrid group 6 | C | E+C | R | + | - |
| Hybrid group 7 | C | E+C | S | + | + |
| Hybrid group 8 | C | C | R | + | - |
| Hybrid group 9 | C | C | R | - | + |
| Hybrid group 10 | C | C | R | - | - |
| Hybrid group 11 | C | C | S | + | + |
| Hybrid group 12 | C | C | S | + | - |
| Hybrid group 13 | C | C | S | - | + |
| El Tor variant | C | C | R | + | + |
| El Tor variant | C | E+C | R | + | + |
| Unclassified group 1 | E+C | E | R | + | + |
| Unclassified group 2 | E+C | E+C | R | + | + |
PB, susceptibility to 50 units of polymyxin B; CCA, chicken red blood cell agglutination; VP, Voges-Proskauer test; R, resistant; S, sensitive; +, positive; -, negative; C, classical; E, El Tor
Fig.Results of MAMA-PCR for amplification of ctxB (A) and ctxBE (B) from representative V. cholerae strains isolated in Thailand during 1986-2009. Lanes 2-6, 1986 strains; lane 7, 1987 strains; lanes 8-9, 1989 strains; lanes 10-22, 1990 strains; lanes 23-26, 1991 strains; lanes 27-36, 1992 strains and lanes 37-56, 1993-2009 strains. Lane M, 100 bp DNA marker. Lane 1 in (A), positive control of ctxB (569B); lane 1 in (B), positive control of ctxB (N16961).