Literature DB >> 21532581

Analysis of repetitive DNA in chromosomes by flow cytometry.

Julie Brind'Amour1, Peter M Lansdorp.   

Abstract

We developed a flow cytometry method, chromosome flow fluorescence in situ hybridization (FISH), called CFF, to analyze repetitive DNA in chromosomes using FISH with directly labeled peptide nucleic acid (PNA) probes. We used CFF to measure the abundance of interstitial telomeric sequences in Chinese hamster chromosomes and major satellite sequences in mouse chromosomes. Using CFF we also identified parental homologs of human chromosome 18 with different amounts of repetitive DNA.

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Year:  2011        PMID： 21532581      PMCID： PMC3753228          DOI： 10.1038/nmeth.1601

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  18 in total

1.  Heterogeneity in telomere length of human chromosomes.

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Journal:  Hum Mol Genet       Date:  1996-05       Impact factor: 6.150

2.  Telomere length dynamics in human lymphocyte subpopulations measured by flow cytometry.

Authors:  N Rufer; W Dragowska; G Thornbury; E Roosnek; P M Lansdorp
Journal:  Nat Biotechnol       Date:  1998-08       Impact factor: 54.908

3.  A method for nucleic acid hybridization to isolated chromosomes in suspension.

Authors:  G Dudin; T Cremer; M Schardin; M Hausmann; F Bier; C Cremer
Journal:  Hum Genet       Date:  1987-07       Impact factor: 4.132

4.  Sequence heterogeneity within the human alphoid repetitive DNA family.

Authors:  P Devilee; P Slagboom; C J Cornelisse; P L Pearson
Journal:  Nucleic Acids Res       Date:  1986-03-11       Impact factor: 16.971

5.  A new method for the preparation of metaphase chromosomes for flow analysis.

Authors:  R Sillar; B D Young
Journal:  J Histochem Cytochem       Date:  1981-01       Impact factor: 2.479

6.  Identification of sister chromatids by DNA template strand sequences.

Authors:  Ester Falconer; Elizabeth A Chavez; Alexander Henderson; Steven S S Poon; Steven McKinney; Lindsay Brown; David G Huntsman; Peter M Lansdorp
Journal:  Nature       Date:  2009-12-16       Impact factor: 49.962

7.  Detection of chimeric BCR-ABL genes on bone marrow samples and blood smears in chronic myeloid and acute lymphoblastic leukemia by in situ hybridization.

Authors:  M Bentz; G Cabot; M Moos; M R Speicher; A Ganser; P Lichter; H Döhner
Journal:  Blood       Date:  1994-04-01       Impact factor: 22.113

8.  Use of fluorescent sequence-specific polyamides to discriminate human chromosomes by microscopy and flow cytometry.

Authors:  Melanie P Gygi; Mark D Ferguson; Heather C Mefford; Kevin P Lund; Christine O'Day; Peiwen Zhou; Cynthia Friedman; Ger van den Engh; Mark L Stolowitz; Barbara J Trask
Journal:  Nucleic Acids Res       Date:  2002-07-01       Impact factor: 16.971

9.  Regulation of murine telomere length by Rtel: an essential gene encoding a helicase-like protein.

Authors:  Hao Ding; Mike Schertzer; Xiaoli Wu; Marina Gertsenstein; Sara Selig; Makoto Kammori; Reza Pourvali; Steven Poon; Irma Vulto; Elizabeth Chavez; Patrick P L Tam; Andras Nagy; Peter M Lansdorp
Journal:  Cell       Date:  2004-06-25       Impact factor: 41.582

10.  Cloning of a representative genomic library of the human X chromosome after sorting by flow cytometry.

Authors:  K E Davies; B D Young; R G Elles; M E Hill; R Williamson
Journal:  Nature       Date:  1981-10-01       Impact factor: 49.962
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  9 in total

1.  Interphase Chromosome Flow-FISH.

Authors:  Keyvan Keyvanfar; Jason Weed; Prashanth Swamy; Sachiko Kajigaya; Rodrigo T Calado; Neal S Young
Journal:  Blood       Date:  2012-08-29       Impact factor: 22.113

2.  Construction of Strand-seq libraries in open nanoliter arrays.

Authors:  Vincent C T Hanlon; Daniel D Chan; Zeid Hamadeh; Yanni Wang; Carl-Adam Mattsson; Diana C J Spierings; Robin J N Coope; Peter M Lansdorp
Journal:  Cell Rep Methods       Date:  2022-01-24

3.  High-Fidelity Single Molecule Quantification in a Flow Cytometer Using Multiparametric Optical Analysis.

Authors:  Lucas D Smith; Yang Liu; Mohammad U Zahid; Taylor D Canady; Liang Wang; Manish Kohli; Brian T Cunningham; Andrew M Smith
Journal:  ACS Nano       Date:  2020-02-07       Impact factor: 15.881

4.  Target DNA detection and quantitation on a single cell with single base resolution.

Authors:  Tania Konry; Adam Lerner; Martin L Yarmush; Irina V Smolina
Journal:  Technology (Singap World Sci)       Date:  2013-09

Review 5.  Chromosomes in the flow to simplify genome analysis.

Authors:  Jaroslav Doležel; Jan Vrána; Jan Safář; Jan Bartoš; Marie Kubaláková; Hana Simková
Journal:  Funct Integr Genomics       Date:  2012-08-16       Impact factor: 3.410

6.  FISHIS: fluorescence in situ hybridization in suspension and chromosome flow sorting made easy.

Authors:  Debora Giorgi; Anna Farina; Valentina Grosso; Andrea Gennaro; Carla Ceoloni; Sergio Lucretti
Journal:  PLoS One       Date:  2013-02-28       Impact factor: 3.240

7.  Fluorescence imaging of chromosomal DNA using click chemistry.

Authors:  Takumi Ishizuka; Hong Shan Liu; Kenichiro Ito; Yan Xu
Journal:  Sci Rep       Date:  2016-09-13       Impact factor: 4.379

8.  A novel FISH technique for labeling the chromosomes of dinoflagellates in suspension.

Authors:  Rosa I Figueroa; Alfredo de Bustos; Ángeles Cuadrado
Journal:  PLoS One       Date:  2018-10-24       Impact factor: 3.240

9.  Re-equilibration of imbalanced NAD metabolism ameliorates the impact of telomere dysfunction.

Authors:  Chongkui Sun; Kun Wang; Amanda J Stock; Yi Gong; Tyler G Demarest; Beimeng Yang; Neelam Giri; Lea Harrington; Blanche P Alter; Sharon A Savage; Vilhelm A Bohr; Yie Liu
Journal:  EMBO J       Date:  2020-09-16       Impact factor: 11.598
  9 in total

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