Literature DB >> 21531123

The blossoming of plant archaeogenetics.

Sarah A Palmer1, Oliver Smith, Robin G Allaby.   

Abstract

Recent years have seen a broadening range of studies undertaken in the field of plant archaeogenetics as the field has entered a new stage of maturity. There has been a movement towards a more functional understanding of plant evolution that has been facilitated by sequencing technologies and increasingly powerful genomic annotation. Studies have progressed to consideration of genes of pertinent function, metagenomics and investigation of the genetic basis of domestication traits coupled with human agricultural selection. Recent applications of high-throughput sequencing have facilitated archaeogenomic investigations and allowed increasingly fragmented DNA to be retrieved and characterised. While these developments are leading to the selective resequencing of targeted genomic regions in archaeobotanical samples, they have also opened up new avenues of opportunity in terms of the accessibility of biomolecules. Material once thought to be void of useful quantities of ancient DNA is now being accessed in the light of diagenetic information thrown up by HTS. The amount of archaeobotanical material that can be utilised and the work that is possible with that material are both increasing making it likely that a fertile period of plant archaeogenetics is underway.
Copyright © 2011. Published by Elsevier GmbH.

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Year:  2011        PMID: 21531123     DOI: 10.1016/j.aanat.2011.03.012

Source DB:  PubMed          Journal:  Ann Anat        ISSN: 0940-9602            Impact factor:   2.698


  14 in total

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2.  Pathogens and host immunity in the ancient human oral cavity.

Authors:  Christina Warinner; João F Matias Rodrigues; Rounak Vyas; Christian Trachsel; Natallia Shved; Jonas Grossmann; Anita Radini; Y Hancock; Raul Y Tito; Sarah Fiddyment; Camilla Speller; Jessica Hendy; Sophy Charlton; Hans Ulrich Luder; Domingo C Salazar-García; Elisabeth Eppler; Roger Seiler; Lars H Hansen; José Alfredo Samaniego Castruita; Simon Barkow-Oesterreicher; Kai Yik Teoh; Christian D Kelstrup; Jesper V Olsen; Paolo Nanni; Toshihisa Kawai; Eske Willerslev; Christian von Mering; Cecil M Lewis; Matthew J Collins; M Thomas P Gilbert; Frank Rühli; Enrico Cappellini
Journal:  Nat Genet       Date:  2014-02-23       Impact factor: 38.330

3.  Farmers without borders-genetic structuring in century old barley (Hordeum vulgare).

Authors:  N E G Forsberg; J Russell; M Macaulay; M W Leino; J Hagenblad
Journal:  Heredity (Edinb)       Date:  2014-09-17       Impact factor: 3.821

Review 4.  Mobilizing the past to shape a better Anthropocene.

Authors:  Nicole Boivin; Alison Crowther
Journal:  Nat Ecol Evol       Date:  2021-01-18       Impact factor: 15.460

5.  Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing.

Authors:  Nathan Wales; J Alberto Romero-Navarro; Enrico Cappellini; M Thomas P Gilbert
Journal:  PLoS One       Date:  2012-09-20       Impact factor: 3.240

6.  Allelic variation at the Rht8 locus in a 19th century wheat collection.

Authors:  Linnéa Asplund; Matti W Leino; Jenny Hagenblad
Journal:  ScientificWorldJournal       Date:  2012-04-30

7.  Long-term RNA persistence in postmortem contexts.

Authors:  Sarah L Fordyce; Marie-Louise Kampmann; Nienke L van Doorn; M Thomas P Gilbert
Journal:  Investig Genet       Date:  2013-04-23

8.  Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains.

Authors:  Nathan Wales; Kenneth Andersen; Enrico Cappellini; María C Avila-Arcos; M Thomas P Gilbert
Journal:  PLoS One       Date:  2014-01-27       Impact factor: 3.240

Review 9.  Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops.

Authors:  Robin G Allaby; Rafal Gutaker; Andrew C Clarke; Neil Pearson; Roselyn Ware; Sarah A Palmer; James L Kitchen; Oliver Smith
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

10.  Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens.

Authors:  Clemens L Weiß; Verena J Schuenemann; Jane Devos; Gautam Shirsekar; Ella Reiter; Billie A Gould; John R Stinchcombe; Johannes Krause; Hernán A Burbano
Journal:  R Soc Open Sci       Date:  2016-06-22       Impact factor: 2.963

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