| Literature DB >> 21529379 |
Shrawan Kumar Mishra1, Prabhat Singh, Srikanta Kumar Rath.
Abstract
BACKGROUND: Amodiaquine (AQ) along with sulphadoxine-pyrimethamine (SP) offers effective and cheaper treatment against chloroquine-resistant falciparum malaria in many parts of sub-Saharan Africa. Considering the previous history of hepatitis, agranulocytosis and neutrocytopenia associated with AQ monotherapy, it becomes imperative to study the toxicity of co-administration of AQ and SP. In this study, toxicity and resulting global differential gene expression was analyzed following exposure to these drugs in experimental Swiss mice.Entities:
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Year: 2011 PMID: 21529379 PMCID: PMC3112449 DOI: 10.1186/1475-2875-10-109
Source DB: PubMed Journal: Malar J ISSN: 1475-2875 Impact factor: 2.979
Figure 1(a - h) Assessment of markers of hepatotoxicity and oxidative stress following exposure of AQ, SP and AQ+SP. Group 1: untreated control; Group 2: treated with AQ, 120 mg/kg body wt[AQ]; Group 3: treated with sulphadoxine (300 mg/kg) and pyrimethamine (15 mg/kg) [SP]; Group 4: Co-treatment of AQ and SP[AQ+SP]; [*(P < 0.05), ** (P < 0.01), *** (P < 0.001)].
List of important differentially expressed probes after administration of AQ in murine Liver.
| Spot labels | Fold Change | Gene Name/Description | GO : Biological function |
|---|---|---|---|
| 11544 | 2.27 | TAP binding protein | antigen processing |
| 20523 | 2.73 | RAB39B, member RAS oncogene family | GTP binding |
| 18680 | 2.49 | Neogenin | ATP binding |
| 11260 | 2.18 | ATPase, Ca++ transporting, plasma membrane 1 | ATP binding |
| 12910 | 2.20 | Dihydropyrimidinase-like 5 | axon guidance |
| 18325 | 3.18 | Calcium channel, voltage-dependent, L type, alpha 1D subunit | calcium channel activity |
| 9921 | 3.51 | Ankyrin repeat domain 6 | DNA binding |
| 18064 | 6.11 | GATA binding protein 2 | DNA binding |
| 20032 | 2.51 | Parathyroid hormone receptor 1 | G-protein coupled receptor activity |
| 12886 | 3.62 | Transmembrane protein with EGF-like and two follistatin-like domains 1 | growth factor activity |
| 21365 | 3.33 | Solute carrier family 38, member 1 | L-glutamine transport |
| 492 | 6.38 | DNA segment, Chr 5, Wayne State University 178, expressed | phospholipid biosynthesis |
| 22462 | -4.53 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 | ATP-dependent helicase activity |
| 10941 | -2.32 | Calcium channel, voltage-dependent, L type, alpha 1C subunit | calcium channel activity |
| 2989 | -2.69 | Nucleoporin 153 | DNA binding |
| 22225 | -4.12 | Suppressor of variegation 4-20 homolog 1 (Drosophila) | histone lysine N-methyltransferase activity |
| 15707 | -2.09 | Lipoma HMGIC fusion partner-like 2 | metabolism |
| 9653 | -2.55 | GCN5 general control of amino acid synthesis-like 2 (yeast) | N-acetyltransferase activity |
| 7818 | -2.15 | Nuclear receptor subfamily 3, group C, member 2 | transcription factor activity |
Fold change (FC) >2(Up-regulated) and FC<-2 (Down-regulated) and P < 0.01.
List of Important differentially expressed probes after administration of SP in murine Liver.
| Spot labels | Fold Change | Gene Name/Description | GO : Biological function |
|---|---|---|---|
| 5638 | 2.01 | Histone deacetylase 9 | Histone deacetylase activity |
| 728 | 2.04 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 | ATP binding |
| 15419 | 2.33 | DEAH (Asp-Glu-Ala-His) box polypeptide 15 | ATP-dependent helicase activity |
| 1745 | 2.66 | Transketolase | Calcium ion binding |
| 14698 | 2.76 | Procollagen, type VI, alpha 2 | Cell adhesion |
| 17252 | 2.02 | Procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 | Endopeptidase inhibitor activity |
| 2107 | 2.62 | Lymphocyte antigen 6 complex, locus G6C | Extracellular space |
| 14620 | 2.11 | RNA binding motif protein, X chromosome retrogene | RNA binding |
| 21645 | 2.11 | RNA binding motif protein 28 | RNA binding |
| 12990 | 2.11 | Eukaryotic translation initiation factor 1 | Translation factor activity |
| 21844 | -3.44 | CDC42 effector protein (Rho GTPase binding) 1 | Signal transduction |
| 8922 | -2.20 | Serine (or cysteine) peptidase inhibitor, clade B, member 6a | Endopeptidase inhibitor activity |
| 5874 | -7.13 | Cytochrome c oxidase subunit VIb polypeptide 2 | Unknown |
| 6344 | -5.56 | Tumor protein D52 | ------------- |
| 11499 | -2.21 | Unknown | ------------- |
| 11550 | -2.54 | RIKEN cDNA 4930471M23 gene | ------------- |
| 11891 | -2.26 | TBC1 domain family, member 19 | ------------- |
Fold change (FC) >2(Up regulated) and FC<-2 (Down regulated) and P < 0.01.
List of Important differentially expressed probes after administration of AQ+SP in murine Liver.
| Spot labels | Fold | Gene Name/Description | GO: Biological Function |
|---|---|---|---|
| 3557 | 2.03 | Cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 | Calcium ion binding |
| 1410 | 3.02 | Solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 | Integral to plasma membrane |
| 16564 | 2.50 | Kelch-like 2, Mayven (Drosophila) | Actin binding |
| 5639 | 2.51 | Integrin beta 8 | Cell adhesion |
| 10049 | 2.49 | Suppression of tumorigenicity 14 (colon carcinoma) | Cell migration |
| 21956 | 2.25 | Mortality factor 4 like 1 | Cell proliferation |
| 14809 | 2.61 | Zinc finger, SWIM domain containing 4 | Cellular component |
| 21155 | 2.42 | Metal response element binding transcription factor 1 | DNA binding |
| 21758 | 3.61 | Regulatory factor X, 3 (influences HLA class II expression) | DNA binding |
| 1649 | 5.71 | Polymerase (RNA) III (DNA directed) polypeptide F | DNA binding |
| 20006 | 3.53 | Cytochrome b5 type B | Electron transport |
| 12949 | 2.47 | GTP binding protein (gene overexpressed in skeletal muscle) | GTP binding |
| 492 | 2.47 | DNA segment, Chr 5, Wayne State University 178, expressed | Integral to membrane |
| 11468 | 3.82 | DNA segment, Chr 18, ERATO Doi 653, expressed | Integral to membrane |
| 9206 | 2.18 | Dystrobrevin binding protein 1 | Muscle development |
| 12725 | 3.03 | Dolichyl-di-phosphooligosaccharide-protein glycotransferase | N-linked glycosylation via asparagine |
| 14957 | 3.64 | Adenosine deaminase, RNA-specific, B2 | RNA binding |
| 15208 | 2.70 | Solute carrier family 25 (mitochondrial carrier, glutamate), member 22 | Transporter activity |
| 22601 | 3.18 | Ubiquitin-conjugating enzyme E2D 2 | Ubiquitin-dependent protein catabolism |
| 10183 | -2.83 | Lysophospholipase 3 | Acyltransferase activity |
| 6999 | -3.22 | Mitogen activated protein kinase 14 | ATP binding |
| 22383 | -2.63 | Transforming growth factor, beta receptor I | ATP binding |
| 2877 | -2.03 | Procollagen, type VI, alpha 3 | Cell adhesion |
| 18522 | -3.11 | Microfibrillar-associated protein 4 | Cell adhesion |
| 874 | -3.24 | BTB and CNC homology 2 | DNA binding |
| 11690 | -8.17 | CXXC finger 1 (PHD domain) | DNA binding |
| 13862 | -2.05 | GLI-Kruppel family member GLI3 | DNA binding |
| 19141 | -2.44 | Protein disulfide isomerase associated 6 | DNA binding |
| 17585 | -2.07 | AT rich interactive domain 5B (Mrf1 like) | DNA binding |
| 18686 | -3.25 | Cytochrome b5 type B | Electron transport |
| 16362 | -3.08 | Proteasome (prosome, macropain) subunit, beta type 2 | Endopeptidase activity |
| 20020 | -4.67 | Phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide | Glycerophospholipid metabolism |
| 13958 | -2.83 | RAS related protein 1b | GTP binding |
| 11531 | -3.27 | Zinc metallopeptidase, STE24 homolog (S. cerevisiae) | Hydrolase activity |
| 13203 | -2.64 | SH2-B PH domain containing signaling mediator 1 | Intracellular signaling cascade |
| 19040 | -2.26 | Malate dehydrogenase 2, NAD (mitochondrial) | Malate dehydrogenase activity |
| 5575 | -2.06 | Ring finger protein (C3HC4 type) 19 | Protein ubiquitination |
| 6605 | -3.30 | Cleavage and polyadenylation specific factor 4 | RNA binding |
Fold change (FC) >2(Up regulated) and FC<-2 (Down regulated) and P < 0.01.
List of genes with their description and expression results by Q-PCR and microarray following treatment with AQ and SP in murine liver.
| Gene Symbol | Gene Name/Description | Q-PCR fold change | Microarray Result Up regulated(▲)/Down regulated (▼) |
|---|---|---|---|
| ADRA1B | Adrenergic receptor, alpha 1b | -6 | ▲ |
| CYP1A2 | Cytochrome P450, family 1, subfamily a, polypeptide 2 | -6 | ▼ |
| CYP2E1 | Cytochrome P450, family 2, subfamily e, polypeptide 1 | -5 | ▼ |
| SC4MOL | Sterol-C4-methyl oxidase-like | -4 | ▼ |
| H2DM | Histocompatibility 2, class II, | 1.2 | ▲ |
| RAC | RAS-related C3 botulinum | -1.8 | ▼ |
| MCM4 | Minichromosome maintenance deficient 4 homolog | 5 | ▲ |
| VKORC | Vitamin K epoxide reductase complex, | -1.5 | ▼ |
| SC5D | Sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog | 7 | ▲ |
| ADH1 | Alcohol dehydrogenase 1 (class I) | 4.8 | ▲ |
| GADD45 | Growth arrest and DNA-damage-inducible 45 gamma | 3.2 | ▲ |
| UGT2B1 | UDP glucuronosyltransferase 2 family, polypeptide B1 | 5 | ▲ |
| MCM5 | Minichromosome maintenance deficient 5 homolog | 2.5 | ▲ |
| GCGR | Glucagon receptor | 8 | ▲ |
Note the direction similarity among Q-PCR and microarray findings for gene expression results.
Figure 2Murine liver cross-sections treated with amodiaquine and sulphadoxine: (a) untreated control, (b) treated with 120 mg/kg of AQ, (c) treated with 300 mg/kg of sulphadoxine and 15 mg/kg of pyrimethamine (SP), (d) Co-exposure of 120 mg/kg AQ and 300 mg/kg sulphadoxine along with 15 mg/kg of pyrimethamine (AQ+SP).
Figure 3Total number of differentially expressed genes following exposure to anti-malarial drugs in murine liver.
Figure 4Important biological pathways regulated by administration of all the three dose categories (AQ, SP and AQ+SP) in murine liver.