Literature DB >> 12454646

Post-analysis follow-up and validation of microarray experiments.

Rodrigo F Chuaqui1, Robert F Bonner, Carolyn J M Best, John W Gillespie, Michael J Flaig, Stephen M Hewitt, John L Phillips, David B Krizman, Michael A Tangrea, Mamoun Ahram, W Marston Linehan, Vladimir Knezevic, Michael R Emmert-Buck.   

Abstract

Measurement of gene-expression profiles using microarray technology is becoming increasingly popular among the biomedical research community. Although there has been great progress in this field, investigators are still confronted with a difficult question after completing their experiments: how to validate the large data sets that are generated? This review summarizes current approaches to verifying global expression results, discusses the caveats that must be considered, and describes some methods that are being developed to address outstanding problems.

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Year:  2002        PMID: 12454646     DOI: 10.1038/ng1034

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  134 in total

1.  A mixture model approach to detecting differentially expressed genes with microarray data.

Authors:  Wei Pan; Jizhen Lin; Chap T Le
Journal:  Funct Integr Genomics       Date:  2003-07-01       Impact factor: 3.410

2.  Evaluation of gene expression measurements from commercial microarray platforms.

Authors:  Paul K Tan; Thomas J Downey; Edward L Spitznagel; Pin Xu; Dadin Fu; Dimiter S Dimitrov; Richard A Lempicki; Bruce M Raaka; Margaret C Cam
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

3.  A versatile assay for high-throughput gene expression profiling on universal array matrices.

Authors:  Jian-Bing Fan; Joanne M Yeakley; Marina Bibikova; Eugene Chudin; Eliza Wickham; Jing Chen; Dennis Doucet; Philippe Rigault; Baohong Zhang; Richard Shen; Celeste McBride; Hai-Ri Li; Xiang-Dong Fu; Arnold Oliphant; David L Barker; Mark S Chee
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

Review 4.  Methodological considerations regarding single-cell gene expression profiling for brain injury.

Authors:  Jason E Davis; James H Eberwine; David A Hinkle; Paolo G Marciano; David F Meaney; Tracy K McIntosh
Journal:  Neurochem Res       Date:  2004-06       Impact factor: 3.996

5.  Quantitative assessment of a novel flow-through porous microarray for the rapid analysis of gene expression profiles.

Authors:  Ying Wu; Peggy de Kievit; Lars Vahlkamp; Dirk Pijnenburg; Maarten Smit; Martijn Dankers; Diana Melchers; Martijn Stax; Piet J Boender; Colin Ingham; Niek Bastiaensen; Rik de Wijn; Dirk van Alewijk; Henk van Damme; Anton K Raap; Alan B Chan; Rinie van Beuningen
Journal:  Nucleic Acids Res       Date:  2004-08-27       Impact factor: 16.971

Review 6.  Using gene expression arrays to elucidate transcriptional profiles underlying prolactin function.

Authors:  Sandra Gass; Jessica Harris; Chris Ormandy; Cathrin Brisken
Journal:  J Mammary Gland Biol Neoplasia       Date:  2003-07       Impact factor: 2.673

Review 7.  In control: systematic assessment of microarray performance.

Authors:  Harm van Bakel; Frank C P Holstege
Journal:  EMBO Rep       Date:  2004-10       Impact factor: 8.807

8.  Multiplexed method to calibrate and quantitate fluorescence signal for allergen-specific IgE.

Authors:  Margo R Monroe; Alexander P Reddington; Austin D Collins; Craig LaBoda; Marina Cretich; Marcella Chiari; Frédéric F Little; M Selim Unlü
Journal:  Anal Chem       Date:  2011-11-22       Impact factor: 6.986

Review 9.  Are histochemistry and cytochemistry 'Omics'?

Authors:  Gary Coulton
Journal:  J Mol Histol       Date:  2004-08       Impact factor: 2.611

10.  Genes related to antiviral activity, cell migration, and lysis are differentially expressed in CD4(+) T cells in human t cell leukemia virus type 1-associated myelopathy/tropical spastic paraparesis patients.

Authors:  Mariana Tomazini Pinto; Tathiane Maistro Malta; Evandra Strazza Rodrigues; Daniel Guariz Pinheiro; Rodrigo Alexandre Panepucci; Kelen Cristina Ribeiro Malmegrim de Farias; Alessandra De Paula Sousa; Osvaldo Massaiti Takayanagui; Yuetsu Tanaka; Dimas Tadeu Covas; Simone Kashima
Journal:  AIDS Res Hum Retroviruses       Date:  2013-10-16       Impact factor: 2.205

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