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Literature DB >> 2152827

Identification within the simian virus 40 genome of a chromosomal loop attachment site that contains topoisomerase II cleavage sites.

Y Pommier¹, P N Cockerill, K W Kohn, W T Garrard.

Abstract

We demonstrate that the simian virus 40 genome contains a single MAR (matrix association region) that maps within a large T-antigen coding region (nucleotides 4071 to 4377). This region contains topoisomerase II cleavage sites, exhibits sequence similarity with cellular MARs, and recognizes the same evolutionarily conserved, abundant nuclear binding sites seen by cellular MARs.

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Year: 1990 PMID： 2152827 PMCID： PMC249119

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

52 in total

1. Genes and loops in 320,000 base-pairs of the Drosophila melanogaster chromosome.

Authors: J Mirkovitch; P Spierer; U K Laemmli
Journal: J Mol Biol Date: 1986-07-20 Impact factor: 5.469

2. Complete nucleotide sequence of SV40 DNA.

Authors: W Fiers; R Contreras; G Haegemann; R Rogiers; A Van de Voorde; H Van Heuverswyn; J Van Herreweghe; G Volckaert; M Ysebaert
Journal: Nature Date: 1978-05-11 Impact factor: 49.962

3. Sequence dependence of Drosophila topoisomerase II in plasmid relaxation and DNA binding.

Authors: M Sander; T Hsieh; A Udvardy; P Schedl
Journal: J Mol Biol Date: 1987-03-20 Impact factor: 5.469

4. In vivo mapping of DNA topoisomerase II-specific cleavage sites on SV40 chromatin.

Authors: L Yang; T C Rowe; E M Nelson; L F Liu
Journal: Cell Date: 1985-05 Impact factor: 41.582

5. Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.

Authors: P N Cockerill; W T Garrard
Journal: Cell Date: 1986-01-31 Impact factor: 41.582

6. The appearance of DNase I hypersensitive sites at the 5' end of the late SV40 genes is correlated with the transcriptional switch.

Authors: C Cremisi
Journal: Nucleic Acids Res Date: 1981-11-25 Impact factor: 16.971

7. Deoxyribonuclease II as a probe to sequence-specific chromatin organization: preferential cleavage in the 72 bp modulator sequence of SV40 minichromosome.

Authors: A N Shakhov; S A Nedospasov; G P Georgiev
Journal: Nucleic Acids Res Date: 1982-07-10 Impact factor: 16.971

8. Roles of DNA topoisomerases in simian virus 40 DNA replication in vitro.

Authors: L Yang; M S Wold; J J Li; T J Kelly; L F Liu
Journal: Proc Natl Acad Sci U S A Date: 1987-02 Impact factor: 11.205

9. In situ localization of DNA topoisomerase II, a major polypeptide component of the Drosophila nuclear matrix fraction.

Authors: M Berrios; N Osheroff; P A Fisher
Journal: Proc Natl Acad Sci U S A Date: 1985-06 Impact factor: 11.205

10. Expression of the Drosophila type II topoisomerase is developmentally regulated.

Authors: R Fairman; D L Brutlag
Journal: Biochemistry Date: 1988-01-26 Impact factor: 3.162

15 in total

Review 1. Genome canalization: the coevolution of transposable and interspersed repetitive elements with single copy DNA.

Authors: R M von Sternberg; G E Novick; G P Gao; R J Herrera
Journal: Genetica Date: 1992 Impact factor: 1.082

2. The recognition of DNA cleavage sites by porcine spleen topoisomerase II.

Authors: H W Huang; J K Juang; H J Liu
Journal: Nucleic Acids Res Date: 1992-02-11 Impact factor: 16.971

3. Local base sequence preferences for DNA cleavage by mammalian topoisomerase II in the presence of amsacrine or teniposide.

Authors: Y Pommier; G Capranico; A Orr; K W Kohn
Journal: Nucleic Acids Res Date: 1991-11-11 Impact factor: 16.971

4. Identification of a matrix-associated region 5' of an immunoglobulin heavy chain variable region gene.

Authors: C F Webb; C Das; K L Eneff; P W Tucker
Journal: Mol Cell Biol Date: 1991-10 Impact factor: 4.272

5. Nuclear matrix attachment regions of human papillomavirus type 16 point toward conservation of these genomic elements in all genital papillomaviruses.

Authors: S H Tan; D Bartsch; E Schwarz; H U Bernard
Journal: J Virol Date: 1998-05 Impact factor: 5.103

6. Nucleosome positioning as a critical determinant for the DNA cleavage sites of mammalian DNA topoisomerase II in reconstituted simian virus 40 chromatin.

Authors: G Capranico; C Jaxel; M Roberge; K W Kohn; Y Pommier
Journal: Nucleic Acids Res Date: 1990-08-11 Impact factor: 16.971

Review 7. Nuclear matrix, dynamic histone acetylation and transcriptionally active chromatin.

Authors: J R Davie
Journal: Mol Biol Rep Date: 1997-08 Impact factor: 2.316

8. A topoisomerase II-like protein is part of an inducible DNA-binding protein complex that binds 5' of an immunoglobulin promoter.

Authors: C F Webb; K L Eneff; F H Drake
Journal: Nucleic Acids Res Date: 1993-09-11 Impact factor: 16.971

9. Localization and dynamics of small circular DNA in live mammalian nuclei.

Authors: Giulia Mearini; Peter E Nielsen; Frank O Fackelmayer
Journal: Nucleic Acids Res Date: 2004-05-11 Impact factor: 16.971

10. Elements in the immunoglobulin heavy-chain enhancer directly regulate simian virus 40 ori-dependent DNA replication.

Authors: K Ariizumi; M R Ghosh; P W Tucker
Journal: Mol Cell Biol Date: 1993-09 Impact factor: 4.272