Literature DB >> 21524102

Geobacter sulfurreducens cytochrome c peroxidases: electrochemical classification of catalytic mechanisms.

Katie E Ellis1, Julian Seidel, Oliver Einsle, Sean J Elliott.   

Abstract

Bacterial cytochrome c peroxidase (CcP) enzymes are diheme redox proteins that reduce hydrogen peroxide to water. They are canonically characterized by a peroxidatic (called L, for "low reduction potential") active site heme and a secondary heme (H, for "high reduction potential") associated with electron transfer, and an enzymatic activity that exists only when the H-heme is prereduced to the Fe(II) oxidation state. The prereduction step results in a conformational change at the active site itself, where a histidine-bearing loop will adopt an "open" conformation allowing hydrogen peroxide to bind to the Fe(III) of the L-heme. Notably, the enzyme from Nitrosomonas europaea does not require prereduction. Previously, we have shown that protein film voltammetry (PFV) is a highly useful tool for distinguishing the electrocatalytic mechanisms of the Nitromonas type of enzyme from other CcPs. Here, we apply PFV to the recently described enzyme from Geobacter sulfurreducens and the Geobacter S134P/V135K double mutant, which have been shown to be similar to members of the canonical subclass of peroxidases and the Nitrosomonas subclass of enzymes, respectively. Here we find that the wild-type Geobacter CcP is indeed similar electrochemically to the bacterial CcPs that require reductive activation, yet the S134P/V135K mutant shows two phases of electrocatalysis: one that is low in potential, like that of the wild-type enzyme, and a second, higher-potential phase that has a potential dependent upon substrate binding and pH yet is at a potential that is very similar to that of the H-heme. These findings are interpreted in terms of a model in which rate-limiting intraprotein electron transfer governs the catalytic performance of the S134P/V135K enzyme.

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Year:  2011        PMID: 21524102      PMCID: PMC3724354          DOI: 10.1021/bi200399h

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.

Authors:  B A Methé; K E Nelson; J A Eisen; I T Paulsen; W Nelson; J F Heidelberg; D Wu; M Wu; N Ward; M J Beanan; R J Dodson; R Madupu; L M Brinkac; S C Daugherty; R T DeBoy; A S Durkin; M Gwinn; J F Kolonay; S A Sullivan; D H Haft; J Selengut; T M Davidsen; N Zafar; O White; B Tran; C Romero; H A Forberger; J Weidman; H Khouri; T V Feldblyum; T R Utterback; S E Van Aken; D R Lovley; C M Fraser
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

Review 2.  Enzyme electrokinetics: using protein film voltammetry to investigate redox enzymes and their mechanisms.

Authors:  Christophe Léger; Sean J Elliott; Kevin R Hoke; Lars J C Jeuken; Anne K Jones; Fraser A Armstrong
Journal:  Biochemistry       Date:  2003-07-29       Impact factor: 3.162

3.  Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor.

Authors:  W C Lin; M V Coppi; D R Lovley
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

4.  Pseudomonas cytochrome c peroxidase. Initial delay of the peroxidatic reaction. Electron transfer properties.

Authors:  M Rönnberg; N Ellfolk
Journal:  Biochim Biophys Acta       Date:  1978-10-11

5.  A voltammetric study of interdomain electron transfer within sulfite oxidase.

Authors:  Sean J Elliott; Anne E McElhaney; Changjian Feng; John H Enemark; Fraser A Armstrong
Journal:  J Am Chem Soc       Date:  2002-10-02       Impact factor: 15.419

6.  Fumarate reductase of Escherichia coli. Elucidation of the covalent-flavin component.

Authors:  J H Weiner; P Dickie
Journal:  J Biol Chem       Date:  1979-09-10       Impact factor: 5.157

7.  Crystal structure of Nitrosomonas europaea cytochrome c peroxidase and the structural basis for ligand switching in bacterial di-heme peroxidases.

Authors:  H Shimizu; D J Schuller; W N Lanzilotta; M Sundaramoorthy; D M Arciero; A B Hooper; T L Poulos
Journal:  Biochemistry       Date:  2001-11-13       Impact factor: 3.162

8.  Heme-linked properties of Pseudomonas cytochrome c peroxidase. Evidence for non-equivalence of the hemes.

Authors:  M Rönnberg; N Ellfolk
Journal:  Biochim Biophys Acta       Date:  1979-12-14

9.  A distinctive electrocatalytic response from the cytochrome c peroxidase of nitrosomonas europaea.

Authors:  Amy L Bradley; Sarah E Chobot; David M Arciero; Alan B Hooper; Sean J Elliott
Journal:  J Biol Chem       Date:  2004-02-18       Impact factor: 5.157

10.  Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617.

Authors:  João M Dias; Teresa Alves; Cecília Bonifácio; Alice S Pereira; José Trincão; Dominique Bourgeois; Isabel Moura; Maria João Romão
Journal:  Structure       Date:  2004-06       Impact factor: 5.006

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  2 in total

1.  MacA is a second cytochrome c peroxidase of Geobacter sulfurreducens.

Authors:  Julian Seidel; Maren Hoffmann; Katie E Ellis; Antonia Seidel; Thomas Spatzal; Stefan Gerhardt; Sean J Elliott; Oliver Einsle
Journal:  Biochemistry       Date:  2012-03-23       Impact factor: 3.162

Review 2.  Multi-heme proteins: nature's electronic multi-purpose tool.

Authors:  Kathryn D Bewley; Katie E Ellis; Mackenzie A Firer-Sherwood; Sean J Elliott
Journal:  Biochim Biophys Acta       Date:  2013-04-02
  2 in total

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