Literature DB >> 21523149

1H-Pyrrole-2-carbohydrazide.

Lina Wang1, Xiangrong Liu, Chun Yang, Shunsheng Zhao, Kanshe Li.   

Abstract

The title compound, C(5)H(7)N(3)O, was obtained by the reaction of ethyl 1H-pyrrol-2-carboxyl-ate and hydrazide hydrate. In the crystal, mol-ecules are linked via inter-molecular N-H⋯N and N-H⋯O hydrogen bonds, forming a supra-molecular grid.

Entities:  

Year:  2011        PMID: 21523149      PMCID: PMC3051602          DOI: 10.1107/S1600536811002650

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyrrole derivatives and their biological activity, see: Joshi et al. (2008 ▶); Demirayak et al. (1999 ▶); Halazy & Magnus (1984 ▶); Bijev (2006 ▶); Sbardella et al. (2004 ▶).

Experimental

Crystal data

C5H7N3O M = 125.14 Orthorhombic, a = 9.9789 (16) Å b = 8.5633 (14) Å c = 13.657 (2) Å V = 1167.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.31 × 0.28 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.968, T max = 0.983 5327 measured reflections 1043 independent reflections 758 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.146 S = 1.04 1043 reflections 90 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811002650/fy2001sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002650/fy2001Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N3ODx = 1.424 Mg m3
Mr = 125.14Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 990 reflections
a = 9.9789 (16) Åθ = 3.0–22.4°
b = 8.5633 (14) ŵ = 0.11 mm1
c = 13.657 (2) ÅT = 296 K
V = 1167.0 (3) Å3Block, colourless
Z = 80.31 × 0.28 × 0.16 mm
F(000) = 528
Bruker APEXII CCD diffractometer1043 independent reflections
Radiation source: fine-focus sealed tube758 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 25.1°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −11→11
Tmin = 0.968, Tmax = 0.983k = −6→10
5327 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0957P)2] where P = (Fo2 + 2Fc2)/3
1043 reflections(Δ/σ)max < 0.001
90 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.55417 (12)0.04787 (18)0.64606 (11)0.0469 (5)
H10.63520.07520.63320.056*
N20.34109 (14)0.28224 (17)0.48978 (11)0.0495 (5)
H20.26670.24140.50870.059*
N30.33807 (16)0.3955 (2)0.41573 (15)0.0551 (5)
O10.56366 (11)0.29286 (15)0.50912 (10)0.0538 (5)
C10.5178 (2)−0.0654 (2)0.71020 (14)0.0523 (5)
H1A0.5761−0.12660.74700.063*
C20.3816 (2)−0.0744 (2)0.71164 (14)0.0544 (6)
H2A0.3304−0.14210.74950.065*
C30.33310 (17)0.0371 (2)0.64571 (14)0.0510 (6)
H30.24350.05730.63180.061*
C40.44238 (15)0.1116 (2)0.60516 (13)0.0418 (5)
C50.45432 (16)0.2352 (2)0.53214 (13)0.0423 (5)
H3A0.394 (3)0.359 (3)0.3665 (19)0.086 (8)*
H3B0.380 (3)0.483 (3)0.4387 (19)0.095 (9)*
U11U22U33U12U13U23
N10.0320 (8)0.0562 (10)0.0526 (10)−0.0009 (7)0.0010 (6)0.0026 (8)
N20.0285 (8)0.0569 (10)0.0631 (10)−0.0010 (6)0.0003 (6)0.0119 (8)
N30.0383 (10)0.0595 (12)0.0674 (12)−0.0003 (8)−0.0021 (8)0.0121 (10)
O10.0304 (8)0.0574 (9)0.0737 (10)−0.0019 (5)0.0016 (6)0.0054 (7)
C10.0483 (11)0.0604 (12)0.0481 (11)0.0021 (9)−0.0002 (8)0.0056 (10)
C20.0455 (12)0.0631 (13)0.0545 (12)−0.0060 (9)0.0063 (9)0.0041 (10)
C30.0357 (10)0.0618 (12)0.0554 (12)−0.0037 (9)0.0001 (8)−0.0008 (10)
C40.0336 (9)0.0469 (11)0.0447 (10)−0.0001 (7)−0.0003 (7)−0.0048 (8)
C50.0319 (10)0.0452 (10)0.0497 (11)0.0003 (8)0.0005 (7)−0.0091 (9)
N1—C11.356 (2)O1—C51.2380 (18)
N1—C41.362 (2)C1—C21.361 (3)
N1—H10.8600C1—H1A0.9300
N2—C51.332 (2)C2—C31.399 (3)
N2—N31.402 (2)C2—H2A0.9300
N2—H20.8600C3—C41.380 (2)
N3—H3A0.93 (3)C3—H30.9300
N3—H3B0.91 (3)C4—C51.459 (3)
C1—N1—C4109.41 (15)C1—C2—C3107.33 (17)
C1—N1—H1125.3C1—C2—H2A126.3
C4—N1—H1125.3C3—C2—H2A126.3
C5—N2—N3122.74 (15)C4—C3—C2107.48 (16)
C5—N2—H2118.6C4—C3—H3126.3
N3—N2—H2118.6C2—C3—H3126.3
N2—N3—H3A106.1 (15)N1—C4—C3107.30 (17)
N2—N3—H3B108.1 (17)N1—C4—C5120.28 (14)
H3A—N3—H3B104 (2)C3—C4—C5132.42 (15)
N1—C1—C2108.47 (17)O1—C5—N2121.13 (18)
N1—C1—H1A125.8O1—C5—C4122.32 (15)
C2—C1—H1A125.8N2—C5—C4116.54 (15)
C4—N1—C1—C2−0.5 (2)N3—N2—C5—O11.6 (3)
N1—C1—C2—C30.2 (2)N3—N2—C5—C4−177.42 (17)
C1—C2—C3—C40.2 (2)N1—C4—C5—O1−4.4 (3)
C1—N1—C4—C30.6 (2)C3—C4—C5—O1175.93 (18)
C1—N1—C4—C5−179.09 (15)N1—C4—C5—N2174.58 (16)
C2—C3—C4—N1−0.5 (2)C3—C4—C5—N2−5.1 (3)
C2—C3—C4—C5179.19 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···N3i0.862.152.996 (2)169
N2—H2···O1ii0.862.062.8422 (19)151
N3—H3B···O1iii0.91 (3)2.12 (3)3.023 (3)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N3i0.862.152.996 (2)169
N2—H2⋯O1ii0.862.062.8422 (19)151
N3—H3B⋯O1iii0.91 (3)2.12 (3)3.023 (3)168 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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