Literature DB >> 21523114

1-(4-Carb-oxy-phen-yl)-1H-imidazol-3-ium chloride dihydrate.

Zhi-Peng Yu1, Wen-Qian Geng, Lin Kong, Hong-Ping Zhou.   

Abstract

In the crystal structure of the title compound, C(10)H(9)N(2)O(2) (+)·Cl(-)·2H(2)O, the components are linked by O-H⋯O, N-H⋯O, O-H⋯Cl and N-H⋯Cl hydrogen bonds. In the cation, the imidazole ring is oriented at a dihedral angle of 13.67 (17)° with respect to the benzene ring. In the crystal, π-π stacking occurs between nearly parallel benzene rings, which are oriented at a dihedral angle of 3.4 (1)°, the centroid-centroid distance being 3.798 (3) Å.

Entities:  

Year:  2011        PMID: 21523114      PMCID: PMC3051584          DOI: 10.1107/S1600536811001838

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related imidazole-containing compounds, see: Nyamori & Bala (2008 ▶); Nie et al. (2009 ▶).

Experimental

Crystal data

C10H9N2O2 +·Cl−·2H2O M = 260.67 Orthorhombic, a = 7.427 (5) Å b = 17.708 (5) Å c = 18.748 (5) Å V = 2465.7 (19) Å3 Z = 8 Mo Kα radiation μ = 0.32 mm−1 T = 298 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.912, T max = 0.940 14555 measured reflections 2165 independent reflections 1515 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.146 S = 0.96 2165 reflections 175 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001838/xu5134sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001838/xu5134Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9N2O2+·Cl·2H2OF(000) = 1088
Mr = 260.67Dx = 1.404 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ac 2abCell parameters from 3445 reflections
a = 7.427 (5) Åθ = 2.3–21.7°
b = 17.708 (5) ŵ = 0.32 mm1
c = 18.748 (5) ÅT = 298 K
V = 2465.7 (19) Å3Block, yellow
Z = 80.30 × 0.20 × 0.20 mm
Bruker SMART CCD area-detector diffractometer2165 independent reflections
Radiation source: fine-focus sealed tube1515 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −8→7
Tmin = 0.912, Tmax = 0.940k = −21→16
14555 measured reflectionsl = −17→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.1P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3
2165 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.99581 (9)0.35765 (4)0.14987 (4)0.0637 (3)
O30.4071 (3)0.34344 (12)0.18640 (13)0.0661 (6)
N10.6552 (3)0.13527 (10)0.12446 (10)0.0467 (5)
C40.6689 (3)0.11991 (13)0.19963 (12)0.0423 (6)
O40.6325 (4)0.41591 (12)0.09501 (10)0.0628 (6)
O20.6026 (3)0.11860 (11)0.46109 (9)0.0678 (6)
H70.61540.10680.50310.102*
O10.7751 (3)0.01818 (11)0.44419 (10)0.0717 (6)
C100.6934 (3)0.07130 (14)0.42051 (13)0.0484 (6)
C60.7468 (3)0.03739 (12)0.29454 (12)0.0473 (6)
H60.7936−0.00830.31050.057*
C70.6859 (3)0.09017 (12)0.34359 (12)0.0436 (6)
C50.7388 (3)0.05180 (13)0.22262 (12)0.0481 (6)
H50.77980.01630.18990.058*
C80.6198 (3)0.15821 (13)0.31931 (13)0.0483 (6)
H80.58050.19410.35200.058*
C90.6110 (3)0.17379 (12)0.24755 (13)0.0469 (6)
H90.56670.21990.23160.056*
N20.6424 (3)0.12032 (12)0.01107 (11)0.0572 (6)
H20.64540.0992−0.03020.069*
C30.6691 (3)0.08596 (14)0.07173 (13)0.0532 (7)
H30.69410.03480.07710.064*
C20.6095 (6)0.19392 (17)0.02329 (16)0.0848 (11)
C10.6184 (6)0.20415 (17)0.09362 (16)0.0934 (12)
H10.60260.24960.11760.112*
H120.554 (5)0.402 (2)0.117 (2)0.079 (13)*
H130.734 (5)0.3965 (18)0.1065 (16)0.076 (11)*
H110.283 (6)0.341 (2)0.179 (2)0.118 (15)*
H100.421 (6)0.359 (2)0.228 (2)0.112 (15)*
H40.597 (5)0.230 (2)−0.017 (2)0.112 (12)*
U11U22U33U12U13U23
Cl10.0640 (5)0.0782 (5)0.0489 (5)−0.0013 (3)0.0008 (3)−0.0005 (3)
O30.0661 (15)0.0778 (14)0.0545 (14)0.0097 (11)0.0031 (11)−0.0011 (11)
N10.0583 (12)0.0435 (11)0.0383 (11)−0.0004 (9)−0.0028 (9)−0.0008 (9)
C40.0480 (13)0.0421 (12)0.0370 (13)−0.0030 (10)−0.0038 (10)−0.0021 (10)
O40.0735 (15)0.0696 (13)0.0452 (12)0.0004 (13)0.0000 (12)0.0038 (9)
O20.0905 (15)0.0737 (12)0.0393 (10)0.0220 (11)0.0038 (10)0.0017 (10)
O10.0959 (15)0.0695 (12)0.0497 (11)0.0272 (12)−0.0011 (10)0.0107 (9)
C100.0514 (14)0.0493 (13)0.0444 (14)0.0007 (12)−0.0044 (12)−0.0011 (12)
C60.0571 (14)0.0351 (11)0.0497 (14)0.0043 (11)−0.0047 (12)0.0016 (11)
C70.0460 (13)0.0431 (13)0.0416 (13)−0.0026 (10)−0.0050 (10)0.0009 (10)
C50.0623 (15)0.0406 (13)0.0413 (13)0.0032 (11)0.0000 (12)−0.0057 (11)
C80.0602 (16)0.0449 (13)0.0397 (14)0.0045 (11)−0.0018 (11)−0.0059 (10)
C90.0583 (15)0.0374 (11)0.0450 (14)0.0064 (11)−0.0015 (11)0.0012 (11)
N20.0716 (15)0.0631 (14)0.0369 (12)−0.0002 (11)−0.0019 (10)−0.0056 (10)
C30.0677 (17)0.0500 (14)0.0420 (14)0.0050 (12)−0.0007 (12)−0.0075 (12)
C20.152 (3)0.0592 (19)0.0428 (17)0.011 (2)−0.0073 (19)0.0062 (14)
C10.186 (4)0.0480 (16)0.0467 (17)0.017 (2)−0.010 (2)0.0026 (13)
O3—H110.94 (5)C6—C71.387 (3)
O3—H100.83 (4)C6—H60.9300
N1—C31.323 (3)C7—C81.379 (3)
N1—C11.377 (3)C5—H50.9300
N1—C41.439 (3)C8—C91.375 (3)
C4—C91.379 (3)C8—H80.9300
C4—C51.382 (3)C9—H90.9300
O4—H120.76 (4)N2—C31.305 (3)
O4—H130.86 (3)N2—C21.346 (4)
O2—C101.317 (3)N2—H20.8600
O2—H70.8200C3—H30.9300
O1—C101.204 (3)C2—C11.333 (4)
C10—C71.481 (3)C2—H40.99 (4)
C6—C51.373 (3)C1—H10.9300
H11—O3—H10106 (4)C4—C5—H5120.5
C3—N1—C1106.6 (2)C9—C8—C7121.0 (2)
C3—N1—C4127.0 (2)C9—C8—H8119.5
C1—N1—C4126.3 (2)C7—C8—H8119.5
C9—C4—C5121.2 (2)C8—C9—C4118.9 (2)
C9—C4—N1119.0 (2)C8—C9—H9120.5
C5—C4—N1119.8 (2)C4—C9—H9120.5
H12—O4—H13115 (3)C3—N2—C2109.3 (2)
C10—O2—H7109.5C3—N2—H2125.3
O1—C10—O2122.8 (2)C2—N2—H2125.3
O1—C10—C7123.6 (2)N2—C3—N1109.4 (2)
O2—C10—C7113.6 (2)N2—C3—H3125.3
C5—C6—C7120.8 (2)N1—C3—H3125.3
C5—C6—H6119.6C1—C2—N2106.9 (3)
C7—C6—H6119.6C1—C2—H4132 (2)
C8—C7—C6119.1 (2)N2—C2—H4121 (2)
C8—C7—C10122.1 (2)C2—C1—N1107.8 (3)
C6—C7—C10118.8 (2)C2—C1—H1126.1
C6—C5—C4119.0 (2)N1—C1—H1126.1
C6—C5—H5120.5
C3—N1—C4—C9−165.3 (2)C6—C7—C8—C91.0 (4)
C1—N1—C4—C912.2 (4)C10—C7—C8—C9−178.7 (2)
C3—N1—C4—C514.4 (4)C7—C8—C9—C40.3 (4)
C1—N1—C4—C5−168.1 (3)C5—C4—C9—C8−1.5 (4)
C5—C6—C7—C8−1.1 (4)N1—C4—C9—C8178.3 (2)
C5—C6—C7—C10178.6 (2)C2—N2—C3—N1−0.2 (3)
O1—C10—C7—C8−167.9 (3)C1—N1—C3—N2−0.3 (3)
O2—C10—C7—C811.7 (3)C4—N1—C3—N2177.6 (2)
O1—C10—C7—C612.4 (4)C3—N2—C2—C10.6 (4)
O2—C10—C7—C6−168.0 (2)N2—C2—C1—N1−0.7 (4)
C7—C6—C5—C40.0 (4)C3—N1—C1—C20.6 (4)
C9—C4—C5—C61.4 (4)C4—N1—C1—C2−177.3 (3)
N1—C4—C5—C6−178.4 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.862.212.822 (3)128
N2—H2···Cl1ii0.862.623.231 (2)129
O2—H7···O4iii0.821.772.594 (3)177
O3—H10···Cl1iv0.83 (4)2.36 (4)3.150 (3)159 (3)
O3—H11···Cl1v0.94 (5)2.22 (5)3.141 (3)168 (3)
O4—H12···O30.76 (4)1.99 (4)2.718 (4)162 (4)
O4—H13···Cl10.86 (4)2.22 (4)3.066 (4)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.862.212.822 (3)128
N2—H2⋯Cl1ii0.862.623.231 (2)129
O2—H7⋯O4iii0.821.772.594 (3)177
O3—H10⋯Cl1iv0.83 (4)2.36 (4)3.150 (3)159 (3)
O3—H11⋯Cl1v0.94 (5)2.22 (5)3.141 (3)168 (3)
O4—H12⋯O30.76 (4)1.99 (4)2.718 (4)162 (4)
O4—H13⋯Cl10.86 (4)2.22 (4)3.066 (4)172 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Ferrocenylmeth-yl-1H-imidazole.

Authors:  Vincent O Nyamori; Muhammad D Bala
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-22

3.  Hexakis(1H-imidazole-κN)cobalt(II) triaqua-tris(1H-imidazole-κN)cobalt(II) bis-(naphthalene-1,4-dicarboxyl-ate).

Authors:  Jing-Jing Nie; Jun-Hua Li; Duan-Jun Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-27
  3 in total

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