Literature DB >> 21523112

1-Benzyl-idene-amino-3-(4-methyl-phen-yl)thio-urea.

Yan-Ling Zhang1, Zhi-Hong Xu, Fu-Juan Zhang, Feng-Ling Yang.   

Abstract

In the title compound, C(15)H(15)N(3)S, the almost planar 2-benzyl-idenehydrazinecarbothio-amide unit (r.m.s. deviation = 0.0351 Å) is aligned at a dihedral angle of 64.42 (6)° with respect to the plane of the tolyl ring. The mol-ecule exhibits an E configuration for the azomethine linkage. In the crystal, inter-molecular N-H⋯S hydrogen bonds about centers of inversion lead to the formation of dimers.

Entities:  

Year:  2011        PMID: 21523112      PMCID: PMC3051669          DOI: 10.1107/S160053681100198X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of thio­semicarbazones, see: Hu et al. (2006 ▶).

Experimental

Crystal data

C15H15N3S M = 269.36 Monoclinic, a = 10.2359 (3) Å b = 16.0648 (3) Å c = 9.9703 (3) Å β = 117.154 (4)° V = 1458.81 (7) Å3 Z = 4 Cu Kα radiation μ = 1.88 mm−1 T = 293 K 0.30 × 0.20 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.603, T max = 0.729 12637 measured reflections 2605 independent reflections 2253 reflections with I > 2σ(I) R int = 0.026 Standard reflections: 0

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.120 S = 1.05 2605 reflections 181 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681100198X/ng5104sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100198X/ng5104Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15N3SF(000) = 568
Mr = 269.36Dx = 1.226 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 7009 reflections
a = 10.2359 (3) Åθ = 4.9–72.1°
b = 16.0648 (3) ŵ = 1.88 mm1
c = 9.9703 (3) ÅT = 293 K
β = 117.154 (4)°Prismatic, colorless
V = 1458.81 (7) Å30.30 × 0.20 × 0.18 mm
Z = 4
Oxford Diffraction Xcalibur Eos Gemini diffractometer2605 independent reflections
Radiation source: fine-focus sealed tube2253 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 67.1°, θmin = 4.9°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −12→12
Tmin = 0.603, Tmax = 0.729k = −19→19
12637 measured reflectionsl = −8→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0727P)2 + 0.1569P] where P = (Fo2 + 2Fc2)/3
2605 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.13263 (6)0.10810 (3)0.02008 (5)0.0727 (2)
N10.15900 (15)−0.00305 (8)0.37897 (15)0.0546 (3)
N20.12114 (16)0.01805 (8)0.23296 (16)0.0566 (3)
N30.28187 (16)0.12678 (9)0.31818 (17)0.0599 (4)
C10.2093 (2)−0.05346 (12)0.6752 (2)0.0684 (5)
H10.2567−0.00520.66940.082*
C20.2298 (3)−0.08202 (15)0.8131 (2)0.0815 (6)
H2A0.2905−0.05280.90000.098*
C30.1610 (3)−0.15388 (14)0.8239 (2)0.0798 (6)
H3A0.1763−0.17360.91770.096*
C40.0699 (3)−0.19596 (13)0.6949 (2)0.0765 (5)
H40.0226−0.24410.70140.092*
C50.0481 (2)−0.16751 (11)0.5560 (2)0.0667 (4)
H5−0.0140−0.19640.46930.080*
C60.11855 (18)−0.09582 (10)0.5445 (2)0.0560 (4)
C70.09253 (18)−0.06621 (10)0.39603 (19)0.0569 (4)
H70.0252−0.09430.31100.068*
C80.18293 (17)0.08400 (9)0.20078 (19)0.0532 (4)
C90.35959 (17)0.19777 (10)0.30466 (18)0.0542 (4)
C100.4599 (2)0.18975 (13)0.2504 (3)0.0838 (6)
H100.48010.13750.22410.101*
C110.5311 (3)0.25904 (16)0.2346 (3)0.0938 (8)
H110.59830.25290.19650.113*
C120.5053 (2)0.33670 (13)0.2737 (2)0.0750 (5)
C130.4092 (2)0.34307 (11)0.3338 (3)0.0790 (5)
H130.39330.39480.36560.095*
C140.3353 (2)0.27444 (11)0.3483 (2)0.0670 (5)
H140.26920.28040.38770.080*
C150.5825 (3)0.41238 (18)0.2529 (3)0.1188 (11)
H15B0.67780.39660.26530.178*
H15C0.59280.45380.32650.178*
H15A0.52570.43470.15360.178*
H20.054 (2)−0.0105 (12)0.158 (2)0.067 (5)*
H30.294 (2)0.1122 (12)0.410 (3)0.069 (6)*
U11U22U33U12U13U23
S10.0880 (4)0.0664 (3)0.0596 (3)−0.0262 (2)0.0302 (2)0.00300 (19)
N10.0597 (7)0.0492 (7)0.0585 (8)0.0007 (5)0.0303 (6)0.0018 (5)
N20.0642 (8)0.0480 (7)0.0573 (8)−0.0075 (6)0.0275 (7)0.0007 (6)
N30.0670 (8)0.0561 (7)0.0596 (8)−0.0104 (6)0.0315 (7)−0.0027 (6)
C10.0754 (11)0.0668 (10)0.0659 (11)−0.0117 (8)0.0349 (9)−0.0038 (8)
C20.0902 (14)0.0930 (14)0.0586 (11)−0.0119 (11)0.0317 (10)−0.0073 (10)
C30.0928 (14)0.0919 (14)0.0675 (12)0.0027 (11)0.0476 (11)0.0111 (10)
C40.0926 (14)0.0691 (11)0.0825 (13)−0.0089 (10)0.0527 (12)0.0085 (9)
C50.0784 (11)0.0588 (9)0.0701 (11)−0.0105 (8)0.0401 (9)−0.0037 (8)
C60.0627 (9)0.0510 (8)0.0620 (9)0.0003 (6)0.0352 (8)−0.0008 (7)
C70.0656 (9)0.0496 (8)0.0593 (9)−0.0042 (7)0.0317 (7)−0.0034 (7)
C80.0561 (8)0.0444 (7)0.0634 (9)0.0003 (6)0.0309 (7)0.0010 (6)
C90.0535 (8)0.0537 (8)0.0560 (8)−0.0063 (6)0.0257 (7)−0.0044 (6)
C100.0799 (13)0.0721 (12)0.1209 (18)−0.0164 (10)0.0643 (13)−0.0325 (12)
C110.0858 (14)0.1098 (17)0.1139 (18)−0.0380 (13)0.0699 (14)−0.0354 (14)
C120.0735 (11)0.0781 (12)0.0649 (11)−0.0267 (9)0.0242 (9)−0.0005 (9)
C130.0830 (13)0.0539 (10)0.0972 (15)−0.0054 (9)0.0387 (11)−0.0048 (9)
C140.0668 (10)0.0599 (10)0.0840 (12)−0.0036 (8)0.0427 (9)−0.0096 (8)
C150.123 (2)0.117 (2)0.1007 (19)−0.0629 (18)0.0376 (16)0.0096 (15)
S1—C81.6776 (17)C5—H50.9300
N1—C71.276 (2)C6—C71.459 (2)
N1—N21.367 (2)C7—H70.9300
N2—C81.346 (2)C9—C141.366 (2)
N2—H20.88 (2)C9—C101.368 (3)
N3—C81.336 (2)C10—C111.378 (3)
N3—C91.432 (2)C10—H100.9300
N3—H30.90 (2)C11—C121.368 (3)
C1—C21.371 (3)C11—H110.9300
C1—C61.386 (3)C12—C131.370 (3)
C1—H10.9300C12—C151.515 (3)
C2—C31.382 (3)C13—C141.381 (3)
C2—H2A0.9300C13—H130.9300
C3—C41.374 (3)C14—H140.9300
C3—H3A0.9300C15—H15B0.9600
C4—C51.376 (3)C15—H15C0.9600
C4—H40.9300C15—H15A0.9600
C5—C61.391 (2)
C7—N1—N2115.46 (14)N3—C8—N2116.54 (15)
C8—N2—N1120.89 (14)N3—C8—S1124.09 (12)
C8—N2—H2118.7 (13)N2—C8—S1119.37 (13)
N1—N2—H2120.4 (13)C14—C9—C10119.28 (16)
C8—N3—C9123.97 (14)C14—C9—N3119.92 (15)
C8—N3—H3117.3 (13)C10—C9—N3120.80 (15)
C9—N3—H3118.6 (13)C9—C10—C11120.03 (18)
C2—C1—C6120.59 (18)C9—C10—H10120.0
C2—C1—H1119.7C11—C10—H10120.0
C6—C1—H1119.7C12—C11—C10121.56 (19)
C1—C2—C3120.49 (19)C12—C11—H11119.2
C1—C2—H2A119.8C10—C11—H11119.2
C3—C2—H2A119.8C11—C12—C13117.60 (18)
C4—C3—C2119.36 (18)C11—C12—C15120.8 (2)
C4—C3—H3A120.3C13—C12—C15121.6 (2)
C2—C3—H3A120.3C12—C13—C14121.51 (19)
C3—C4—C5120.53 (18)C12—C13—H13119.2
C3—C4—H4119.7C14—C13—H13119.2
C5—C4—H4119.7C9—C14—C13119.93 (17)
C4—C5—C6120.38 (18)C9—C14—H14120.0
C4—C5—H5119.8C13—C14—H14120.0
C6—C5—H5119.8C12—C15—H15B109.5
C1—C6—C5118.64 (16)C12—C15—H15C109.5
C1—C6—C7121.86 (15)H15B—C15—H15C109.5
C5—C6—C7119.48 (15)C12—C15—H15A109.5
N1—C7—C6122.22 (15)H15B—C15—H15A109.5
N1—C7—H7118.9H15C—C15—H15A109.5
C6—C7—H7118.9
C7—N1—N2—C8179.41 (15)N1—N2—C8—N30.1 (2)
C6—C1—C2—C30.4 (3)N1—N2—C8—S1−179.63 (11)
C1—C2—C3—C4−0.9 (4)C8—N3—C9—C14113.67 (19)
C2—C3—C4—C50.6 (3)C8—N3—C9—C10−67.3 (2)
C3—C4—C5—C60.2 (3)C14—C9—C10—C11−2.5 (3)
C2—C1—C6—C50.4 (3)N3—C9—C10—C11178.4 (2)
C2—C1—C6—C7178.92 (18)C9—C10—C11—C120.7 (4)
C4—C5—C6—C1−0.7 (3)C10—C11—C12—C132.0 (4)
C4—C5—C6—C7−179.28 (17)C10—C11—C12—C15−178.9 (2)
N2—N1—C7—C6−178.88 (14)C11—C12—C13—C14−3.0 (3)
C1—C6—C7—N14.7 (3)C15—C12—C13—C14177.9 (2)
C5—C6—C7—N1−176.80 (16)C10—C9—C14—C131.6 (3)
C9—N3—C8—N2179.12 (14)N3—C9—C14—C13−179.34 (18)
C9—N3—C8—S1−1.2 (2)C12—C13—C14—C91.2 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2···S1i0.88 (2)2.48 (2)3.3522 (15)170.3 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1i0.88 (2)2.48 (2)3.3522 (15)170.3 (17)

Symmetry code: (i) .

  2 in total

1.  Synthesis and anticancer activity of thiosemicarbazones.

Authors:  Wei-xiao Hu; Wei Zhou; Chun-nian Xia; Xi Wen
Journal:  Bioorg Med Chem Lett       Date:  2006-02-03       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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