Literature DB >> 21523093

2-[1-(4-Chloro-benzo-yl)pyrrolidin-2-yl]-4,4,5,5-tetra-methyl-4,5-dihydro-imidazole-1-oxyl-3-oxide.

Min Tian, Zhuo Xiang, Si-Yuan Zhou, Lin-Lin Jing, Hai-Bo Wang, Xiao-Li Sun.   

Abstract

In the title compound, C(18)H(23)ClN(3)O(3), the imidazole ring system has an envelope conformation, whereas the nitronyl nitroxide unit displays a half-chair or twisted conformation. In the crystal, C-H⋯O hydrogen bonds build up a three-dimensional network.

Entities:  

Year:  2011        PMID: 21523093      PMCID: PMC3051528          DOI: 10.1107/S1600536811001462

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of nitronyl nitroxides, see: Soule et al. (2007 ▶ and for their coordination properties, see: Masuda et al. (2009 ▶). For related structures, see: Iqbal et al. (2009 ▶); Wang et al. (2009 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C18H23ClN3O3 M = 364.84 Monoclinic, a = 11.6202 (19) Å b = 8.2694 (13) Å c = 20.315 (3) Å β = 105.636 (2)° V = 1879.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 296 K 0.34 × 0.29 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.928, T max = 0.960 9089 measured reflections 3342 independent reflections 1791 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.152 S = 1.03 3342 reflections 230 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008b ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001462/dn2639sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001462/dn2639Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H23ClN3O3F(000) = 772
Mr = 364.84Dx = 1.289 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1006 reflections
a = 11.6202 (19) Åθ = 2.3–19.1°
b = 8.2694 (13) ŵ = 0.23 mm1
c = 20.315 (3) ÅT = 296 K
β = 105.636 (2)°Block, purple
V = 1879.8 (5) Å30.34 × 0.29 × 0.18 mm
Z = 4
Bruker APEXII CCD diffractometer3342 independent reflections
Radiation source: fine-focus sealed tube1791 reflections with I > 2σ(I)
graphiteRint = 0.051
φ and ω scansθmax = 25.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −13→13
Tmin = 0.928, Tmax = 0.960k = −9→5
9089 measured reflectionsl = −24→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0548P)2] where P = (Fo2 + 2Fc2)/3
3342 reflections(Δ/σ)max < 0.001
230 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.24418 (8)−0.02934 (14)0.22799 (5)0.0934 (4)
O10.61663 (17)0.1756 (3)0.04529 (10)0.0602 (6)
O20.84803 (18)0.2887 (2)−0.03089 (10)0.0613 (6)
O30.7771 (2)0.5304 (3)0.15800 (11)0.0793 (8)
N10.7572 (2)0.1723 (3)0.14502 (11)0.0496 (6)
N20.81945 (18)0.3955 (3)0.00771 (11)0.0462 (6)
N30.7868 (2)0.5102 (3)0.09729 (12)0.0522 (7)
C10.3608 (3)0.0241 (4)0.19376 (17)0.0586 (9)
C20.3684 (3)−0.0441 (4)0.13384 (17)0.0601 (9)
H2A0.3113−0.11820.11110.072*
C30.4613 (3)−0.0021 (3)0.10737 (15)0.0537 (8)
H3A0.4661−0.04710.06620.064*
C40.5484 (2)0.1070 (3)0.14140 (14)0.0472 (7)
C50.5373 (3)0.1743 (4)0.20168 (15)0.0561 (8)
H50.59420.24800.22500.067*
C60.4434 (3)0.1341 (4)0.22772 (16)0.0609 (9)
H60.43620.18120.26800.073*
C70.6433 (3)0.1542 (3)0.10742 (15)0.0479 (7)
C80.8104 (3)0.1429 (4)0.21806 (14)0.0617 (9)
H8A0.77480.04910.23350.074*
H8B0.80080.23600.24510.074*
C90.9400 (3)0.1137 (5)0.22247 (16)0.0697 (10)
H9A0.95370.00200.21210.084*
H9B0.99040.14010.26760.084*
C100.9636 (3)0.2265 (4)0.16896 (16)0.0635 (9)
H10A1.03150.19000.15370.076*
H10B0.97870.33570.18660.076*
C110.8480 (2)0.2188 (4)0.11055 (14)0.0486 (8)
H110.85530.13320.07860.058*
C120.8187 (2)0.3736 (4)0.07277 (13)0.0438 (7)
C130.7659 (3)0.5550 (4)−0.01959 (15)0.0510 (8)
C140.7768 (3)0.6477 (4)0.04813 (15)0.0531 (8)
C150.8360 (3)0.6285 (4)−0.06555 (17)0.0779 (11)
H15A0.91810.6412−0.04020.117*
H15B0.80290.7322−0.08160.117*
H15C0.83110.5585−0.10390.117*
C160.6380 (3)0.5167 (4)−0.05963 (18)0.0816 (12)
H16A0.63880.4451−0.09670.122*
H16B0.59760.6150−0.07750.122*
H16C0.59710.4657−0.03000.122*
C170.8923 (3)0.7448 (4)0.07346 (18)0.0801 (11)
H17A0.89990.78090.11930.120*
H17B0.89010.83670.04430.120*
H17C0.95930.67770.07270.120*
C180.6703 (3)0.7508 (5)0.05121 (19)0.0856 (12)
H18A0.59870.68720.03750.128*
H18B0.66430.84150.02100.128*
H18C0.68070.78870.09710.128*
U11U22U33U12U13U23
Cl10.0622 (6)0.1224 (10)0.1045 (8)−0.0041 (5)0.0375 (6)0.0165 (6)
O10.0588 (13)0.0744 (16)0.0446 (13)−0.0067 (11)0.0091 (10)0.0026 (10)
O20.0730 (14)0.0614 (16)0.0543 (13)0.0069 (11)0.0252 (11)−0.0072 (11)
O30.114 (2)0.0787 (18)0.0516 (14)0.0164 (14)0.0341 (13)−0.0040 (12)
N10.0472 (15)0.0576 (17)0.0428 (14)−0.0007 (12)0.0099 (12)0.0103 (11)
N20.0456 (13)0.0504 (16)0.0447 (15)0.0033 (12)0.0155 (11)−0.0006 (12)
N30.0622 (16)0.0504 (17)0.0464 (16)0.0085 (12)0.0185 (13)0.0005 (13)
C10.0430 (18)0.068 (2)0.065 (2)0.0065 (16)0.0152 (16)0.0131 (18)
C20.0481 (19)0.052 (2)0.075 (2)−0.0038 (15)0.0087 (17)0.0014 (17)
C30.0515 (19)0.053 (2)0.0521 (19)0.0012 (16)0.0069 (16)−0.0061 (15)
C40.0467 (17)0.0432 (19)0.0498 (18)0.0038 (14)0.0100 (14)0.0042 (14)
C50.0522 (19)0.059 (2)0.055 (2)−0.0026 (15)0.0107 (16)−0.0082 (16)
C60.055 (2)0.075 (3)0.0533 (19)0.0059 (18)0.0165 (16)−0.0048 (17)
C70.0521 (19)0.0430 (19)0.0470 (18)0.0001 (14)0.0107 (15)−0.0006 (14)
C80.058 (2)0.077 (3)0.0484 (19)0.0023 (17)0.0103 (15)0.0142 (16)
C90.056 (2)0.088 (3)0.062 (2)0.0021 (18)0.0107 (16)0.0231 (19)
C100.0503 (18)0.070 (2)0.067 (2)0.0038 (16)0.0088 (16)0.0188 (17)
C110.0472 (17)0.049 (2)0.0495 (18)0.0049 (14)0.0131 (14)0.0086 (14)
C120.0428 (16)0.049 (2)0.0401 (17)0.0037 (14)0.0116 (13)0.0050 (15)
C130.0522 (18)0.048 (2)0.0488 (18)0.0073 (15)0.0074 (14)0.0112 (14)
C140.0546 (19)0.047 (2)0.058 (2)0.0111 (15)0.0157 (15)0.0076 (15)
C150.104 (3)0.070 (3)0.068 (2)0.001 (2)0.039 (2)0.0161 (18)
C160.067 (2)0.084 (3)0.076 (2)0.0130 (19)−0.011 (2)0.0042 (19)
C170.087 (3)0.068 (3)0.086 (3)−0.015 (2)0.024 (2)−0.0091 (19)
C180.087 (3)0.082 (3)0.089 (3)0.040 (2)0.027 (2)0.008 (2)
Cl1—C11.738 (3)C9—C101.513 (4)
O1—C71.229 (3)C9—H9A0.9700
O2—N21.283 (3)C9—H9B0.9700
O3—N31.279 (3)C10—C111.535 (4)
N1—C71.346 (3)C10—H10A0.9700
N1—C81.466 (3)C10—H10B0.9700
N1—C111.467 (3)C11—C121.484 (4)
N2—C121.336 (3)C11—H110.9800
N2—C131.500 (4)C13—C151.521 (4)
N3—C121.328 (3)C13—C161.523 (4)
N3—C141.497 (4)C13—C141.550 (4)
C1—C21.366 (4)C14—C181.517 (4)
C1—C61.367 (4)C14—C171.529 (4)
C2—C31.374 (4)C15—H15A0.9600
C2—H2A0.9300C15—H15B0.9600
C3—C41.392 (4)C15—H15C0.9600
C3—H3A0.9300C16—H16A0.9600
C4—C51.382 (4)C16—H16B0.9600
C4—C71.502 (4)C16—H16C0.9600
C5—C61.376 (4)C17—H17A0.9600
C5—H50.9300C17—H17B0.9600
C6—H60.9300C17—H17C0.9600
C8—C91.503 (4)C18—H18A0.9600
C8—H8A0.9700C18—H18B0.9600
C8—H8B0.9700C18—H18C0.9600
C7—N1—C8129.7 (2)H10A—C10—H10B109.0
C7—N1—C11118.8 (2)N1—C11—C12112.2 (2)
C8—N1—C11111.4 (2)N1—C11—C10103.5 (2)
O2—N2—C12125.7 (2)C12—C11—C10113.3 (2)
O2—N2—C13122.0 (2)N1—C11—H11109.2
C12—N2—C13111.9 (2)C12—C11—H11109.2
O3—N3—C12125.4 (2)C10—C11—H11109.2
O3—N3—C14122.2 (2)N3—C12—N2109.4 (2)
C12—N3—C14112.1 (2)N3—C12—C11126.1 (3)
C2—C1—C6121.2 (3)N2—C12—C11124.5 (3)
C2—C1—Cl1119.8 (3)N2—C13—C15110.0 (2)
C6—C1—Cl1119.0 (3)N2—C13—C16105.2 (2)
C1—C2—C3119.4 (3)C15—C13—C16111.2 (3)
C1—C2—H2A120.3N2—C13—C14100.4 (2)
C3—C2—H2A120.3C15—C13—C14114.7 (3)
C2—C3—C4120.8 (3)C16—C13—C14114.3 (3)
C2—C3—H3A119.6N3—C14—C18108.5 (3)
C4—C3—H3A119.6N3—C14—C17105.7 (2)
C5—C4—C3118.2 (3)C18—C14—C17110.0 (3)
C5—C4—C7123.9 (3)N3—C14—C13100.9 (2)
C3—C4—C7117.7 (3)C18—C14—C13116.2 (3)
C6—C5—C4121.1 (3)C17—C14—C13114.3 (3)
C6—C5—H5119.5C13—C15—H15A109.5
C4—C5—H5119.5C13—C15—H15B109.5
C1—C6—C5119.3 (3)H15A—C15—H15B109.5
C1—C6—H6120.4C13—C15—H15C109.5
C5—C6—H6120.4H15A—C15—H15C109.5
O1—C7—N1120.3 (3)H15B—C15—H15C109.5
O1—C7—C4119.8 (3)C13—C16—H16A109.5
N1—C7—C4120.0 (2)C13—C16—H16B109.5
N1—C8—C9103.3 (2)H16A—C16—H16B109.5
N1—C8—H8A111.1C13—C16—H16C109.5
C9—C8—H8A111.1H16A—C16—H16C109.5
N1—C8—H8B111.1H16B—C16—H16C109.5
C9—C8—H8B111.1C14—C17—H17A109.5
H8A—C8—H8B109.1C14—C17—H17B109.5
C8—C9—C10103.4 (2)H17A—C17—H17B109.5
C8—C9—H9A111.1C14—C17—H17C109.5
C10—C9—H9A111.1H17A—C17—H17C109.5
C8—C9—H9B111.1H17B—C17—H17C109.5
C10—C9—H9B111.1C14—C18—H18A109.5
H9A—C9—H9B109.1C14—C18—H18B109.5
C9—C10—C11103.9 (2)H18A—C18—H18B109.5
C9—C10—H10A111.0C14—C18—H18C109.5
C11—C10—H10A111.0H18A—C18—H18C109.5
C9—C10—H10B111.0H18B—C18—H18C109.5
C11—C10—H10B111.0
C6—C1—C2—C30.4 (5)C14—N3—C12—C11173.7 (2)
Cl1—C1—C2—C3−179.5 (2)O2—N2—C12—N3178.9 (2)
C1—C2—C3—C40.9 (4)C13—N2—C12—N3−9.2 (3)
C2—C3—C4—C5−1.3 (4)O2—N2—C12—C11−1.8 (4)
C2—C3—C4—C7−176.6 (3)C13—N2—C12—C11170.2 (2)
C3—C4—C5—C60.4 (4)N1—C11—C12—N349.2 (4)
C7—C4—C5—C6175.4 (3)C10—C11—C12—N3−67.6 (4)
C2—C1—C6—C5−1.3 (5)N1—C11—C12—N2−130.0 (3)
Cl1—C1—C6—C5178.6 (2)C10—C11—C12—N2113.2 (3)
C4—C5—C6—C10.9 (5)O2—N2—C13—C15−46.3 (3)
C8—N1—C7—O1−175.4 (3)C12—N2—C13—C15141.3 (2)
C11—N1—C7—O10.4 (4)O2—N2—C13—C1673.5 (3)
C8—N1—C7—C44.3 (4)C12—N2—C13—C16−98.8 (3)
C11—N1—C7—C4−179.9 (2)O2—N2—C13—C14−167.6 (2)
C5—C4—C7—O1−135.9 (3)C12—N2—C13—C1420.1 (3)
C3—C4—C7—O139.1 (4)O3—N3—C14—C18−45.1 (4)
C5—C4—C7—N144.4 (4)C12—N3—C14—C18141.5 (3)
C3—C4—C7—N1−140.7 (3)O3—N3—C14—C1772.9 (3)
C7—N1—C8—C9156.1 (3)C12—N3—C14—C17−100.5 (3)
C11—N1—C8—C9−20.0 (3)O3—N3—C14—C13−167.8 (3)
N1—C8—C9—C1035.2 (3)C12—N3—C14—C1318.9 (3)
C8—C9—C10—C11−37.6 (3)N2—C13—C14—N3−21.4 (3)
C7—N1—C11—C1257.7 (3)C15—C13—C14—N3−139.2 (3)
C8—N1—C11—C12−125.8 (3)C16—C13—C14—N390.6 (3)
C7—N1—C11—C10−179.8 (2)N2—C13—C14—C18−138.5 (3)
C8—N1—C11—C10−3.3 (3)C15—C13—C14—C18103.7 (3)
C9—C10—C11—N125.2 (3)C16—C13—C14—C18−26.5 (4)
C9—C10—C11—C12147.0 (3)N2—C13—C14—C1791.5 (3)
O3—N3—C12—N2179.9 (3)C15—C13—C14—C17−26.3 (4)
C14—N3—C12—N2−7.0 (3)C16—C13—C14—C17−156.4 (3)
O3—N3—C12—C110.6 (5)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O2i0.932.543.458 (4)170
C3—H3A···O1i0.932.453.314 (4)154
C8—H8A···O3ii0.972.443.101 (4)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O2i0.932.543.458 (4)170
C3—H3A⋯O1i0.932.453.314 (4)154
C8—H8A⋯O3ii0.972.443.101 (4)125

Symmetry codes: (i) ; (ii) .

  6 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4,4,5,5-Tetra-methyl-2-(3,4,5-trimethoxy-phen-yl)imidazolidine-1-oxyl 3-oxide.

Authors:  Hai-Bo Wang; Lin-Lin Jing; Peng Gao; Xiao-Li Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

Review 3.  The chemistry and biology of nitroxide compounds.

Authors:  Benjamin P Soule; Fuminori Hyodo; Ken-Ichiro Matsumoto; Nicole L Simone; John A Cook; Murali C Krishna; James B Mitchell
Journal:  Free Radic Biol Med       Date:  2007-03-12       Impact factor: 7.376

4.  A new ferrimagnet based on a radical-substituted radical cation salt.

Authors:  Yuki Masuda; Masato Kuratsu; Shuichi Suzuki; Masatoshi Kozaki; Daisuke Shiomi; Kazunobu Sato; Takeji Takui; Yuko Hosokoshi; Xiao-Zheng Lan; Yuji Miyazaki; Akira Inaba; Keiji Okada
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

5.  Very strongly ferromagnetically coupled diradicals from mixed radical centers: nitronyl nitroxide coupled to oxoverdazyl via polyene spacers.

Authors:  Iqbal A Latif; Anirban Panda; Sambhu N Datta
Journal:  J Phys Chem A       Date:  2009-02-02       Impact factor: 2.781

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  (R)-2-[1-(2,6-Dichloro-3,4,5-trimeth-oxy-benzo-yl)pyrrolidin-2-yl]-4,4,5,5-tetra-methyl-4,5-dihydro-1H-imidazole-1-oxyl 3-oxide.

Authors:  Hai-Bo Wang; Zhuo Xiang; Lin-Lin Jing; Min Tian; Xiao-Li Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-26
  1 in total

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