Literature DB >> 21523016

N-Cyclo-hexyl-cyclo-hexa-naminium chloride.

Mehrdad Pourayoubi, Monireh Negari, Marek Nečas.   

Abstract

In the title salt, C(12)H(24)N(+)·Cl(-), both cyclo-hexyl rings adopt chair conformations and the NH(2) unit is situated in the equatorial position with respect to the rings in the cation. The large C-N-C bond angle [117.99 (14)°] in the cation is a result of linking two bulky cyclo-hexyl rings to the N atom. The aminium H atoms are involved in inter-molecular N-H⋯Cl hydrogen bonds, forming an infinite zigzag chain parallel to the c axis. The crystal studied was a racemic twin with a twin fraction of 0.28 (18).

Entities:  

Year:  2011        PMID: 21523016      PMCID: PMC3051479          DOI: 10.1107/S1600536811000857

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gholivand & Pourayoubi (2004 ▶); Pourayoubi & Negari (2010 ▶).

Experimental

Crystal data

C12H24NCl− M = 217.77 Orthorhombic, a = 40.0268 (19) Å b = 23.1726 (10) Å c = 5.3463 (2) Å V = 4958.8 (4) Å3 Z = 16 Mo Kα radiation μ = 0.27 mm−1 T = 120 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.886, T max = 1.000 13243 measured reflections 1219 independent reflections 1096 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.057 S = 1.00 1219 reflections 136 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.11 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000857/pv2369sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000857/pv2369Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H24N+·ClF(000) = 1920
Mr = 217.77Dx = 1.167 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 6909 reflections
a = 40.0268 (19) Åθ = 2.8–27.3°
b = 23.1726 (10) ŵ = 0.27 mm1
c = 5.3463 (2) ÅT = 120 K
V = 4958.8 (4) Å3Block, colorless
Z = 160.30 × 0.20 × 0.20 mm
Oxford Diffraction Xcalibur Sapphire2 diffractometer1219 independent reflections
Radiation source: Enhance (Mo) X-ray Source1096 reflections with I > 2σ(I)
graphiteRint = 0.032
Detector resolution: 8.4353 pixels mm-1θmax = 25.0°, θmin = 3.5°
ω scansh = −25→47
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −26→27
Tmin = 0.886, Tmax = 1.000l = −6→6
13243 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.057H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0378P)2] where P = (Fo2 + 2Fc2)/3
1219 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.30 e Å3
1 restraintΔρmin = −0.11 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.100648 (13)0.19484 (2)0.28104 (17)0.02112 (15)
N10.10617 (4)0.26694 (6)0.7818 (5)0.0166 (4)
C10.14111 (5)0.29218 (8)0.7797 (5)0.0161 (4)
H1B0.14330.31860.63280.019*
C20.16565 (5)0.24213 (9)0.7477 (5)0.0228 (5)
H2A0.16110.22210.58770.027*
H2B0.16250.21400.88520.027*
C30.20173 (5)0.26402 (10)0.7495 (5)0.0258 (5)
H3A0.21720.23090.73600.031*
H3B0.20540.28940.60320.031*
C40.20916 (5)0.29750 (9)0.9898 (5)0.0237 (6)
H4A0.20740.27131.13540.028*
H4B0.23220.31280.98370.028*
C50.18455 (5)0.34732 (8)1.0204 (6)0.0227 (5)
H5A0.18790.37530.88280.027*
H5B0.18910.36741.18020.027*
C60.14823 (5)0.32636 (8)1.0181 (6)0.0207 (5)
H6A0.14410.30161.16600.025*
H6B0.13300.35991.02760.025*
C70.07713 (5)0.30801 (8)0.7845 (6)0.0169 (4)
H7A0.08040.33630.92380.020*
C80.04529 (5)0.27365 (9)0.8342 (5)0.0219 (5)
H8A0.04710.25380.99770.026*
H8B0.04250.24390.70310.026*
C90.01485 (6)0.31357 (11)0.8354 (5)0.0277 (6)
H9A−0.00560.29030.85940.033*
H9B0.01660.34080.97740.033*
C100.01206 (6)0.34760 (10)0.5914 (5)0.0262 (6)
H10A−0.00680.37510.60340.031*
H10B0.00740.32070.45180.031*
C110.04427 (5)0.38076 (8)0.5367 (5)0.0224 (5)
H11A0.04730.41120.66440.027*
H11B0.04240.39980.37150.027*
C120.07490 (5)0.34125 (8)0.5370 (5)0.0196 (5)
H12A0.09540.36460.51380.024*
H12B0.07330.31360.39620.024*
H1N0.1053 (6)0.2468 (10)0.920 (5)0.012 (7)*
H2N0.1029 (6)0.2391 (12)0.634 (6)0.040 (9)*
U11U22U33U12U13U23
Cl10.0307 (3)0.0149 (2)0.0178 (2)0.0004 (2)−0.0032 (3)0.0000 (2)
N10.0183 (11)0.0159 (8)0.0155 (8)0.0013 (7)−0.0006 (9)0.0034 (10)
C10.0125 (10)0.0191 (10)0.0169 (10)−0.0010 (8)−0.0012 (12)0.0001 (11)
C20.0209 (13)0.0225 (11)0.0250 (13)0.0037 (10)−0.0036 (11)−0.0085 (10)
C30.0159 (13)0.0342 (12)0.0274 (13)0.0057 (10)−0.0037 (12)−0.0105 (12)
C40.0171 (13)0.0275 (12)0.0265 (13)−0.0003 (10)−0.0046 (12)−0.0067 (10)
C50.0184 (13)0.0217 (10)0.0280 (12)−0.0004 (9)−0.0064 (13)−0.0072 (13)
C60.0191 (12)0.0195 (10)0.0235 (11)0.0022 (10)−0.0002 (11)−0.0019 (12)
C70.0164 (11)0.0172 (9)0.0171 (9)0.0033 (9)−0.0024 (13)−0.0034 (10)
C80.0205 (13)0.0249 (12)0.0203 (13)−0.0018 (10)−0.0001 (10)0.0081 (9)
C90.0170 (13)0.0374 (14)0.0288 (16)−0.0005 (11)0.0014 (10)0.0076 (11)
C100.0210 (14)0.0277 (12)0.0298 (15)0.0037 (11)−0.0044 (11)0.0041 (10)
C110.0209 (13)0.0184 (10)0.0281 (12)0.0008 (9)−0.0028 (13)0.0017 (11)
C120.0187 (13)0.0162 (10)0.0240 (11)−0.0003 (9)0.0003 (12)0.0051 (11)
N1—C71.502 (2)C6—H6A0.9900
N1—C11.516 (2)C6—H6B0.9900
N1—H1N0.87 (2)C7—C81.526 (3)
N1—H2N1.03 (3)C7—C121.534 (4)
C1—C61.527 (4)C7—H7A1.0000
C1—C21.529 (3)C8—C91.530 (3)
C1—H1B1.0000C8—H8A0.9900
C2—C31.531 (3)C8—H8B0.9900
C2—H2A0.9900C9—C101.529 (3)
C2—H2B0.9900C9—H9A0.9900
C3—C41.530 (3)C9—H9B0.9900
C3—H3A0.9900C10—C111.529 (3)
C3—H3B0.9900C10—H10A0.9900
C4—C51.526 (3)C10—H10B0.9900
C4—H4A0.9900C11—C121.530 (3)
C4—H4B0.9900C11—H11A0.9900
C5—C61.533 (3)C11—H11B0.9900
C5—H5A0.9900C12—H12A0.9900
C5—H5B0.9900C12—H12B0.9900
C7—N1—C1117.99 (14)C1—C6—H6B109.6
C7—N1—H1N107.4 (15)C5—C6—H6B109.6
C1—N1—H1N104.4 (15)H6A—C6—H6B108.1
C7—N1—H2N107.9 (15)N1—C7—C8108.49 (15)
C1—N1—H2N110.7 (14)N1—C7—C12110.8 (2)
H1N—N1—H2N108.0 (17)C8—C7—C12111.32 (19)
N1—C1—C6111.49 (19)N1—C7—H7A108.7
N1—C1—C2107.50 (15)C8—C7—H7A108.7
C6—C1—C2111.50 (18)C12—C7—H7A108.7
N1—C1—H1B108.8C7—C8—C9110.51 (17)
C6—C1—H1B108.8C7—C8—H8A109.5
C2—C1—H1B108.8C9—C8—H8A109.5
C1—C2—C3110.73 (17)C7—C8—H8B109.5
C1—C2—H2A109.5C9—C8—H8B109.5
C3—C2—H2A109.5H8A—C8—H8B108.1
C1—C2—H2B109.5C10—C9—C8111.50 (19)
C3—C2—H2B109.5C10—C9—H9A109.3
H2A—C2—H2B108.1C8—C9—H9A109.3
C4—C3—C2110.89 (19)C10—C9—H9B109.3
C4—C3—H3A109.5C8—C9—H9B109.3
C2—C3—H3A109.5H9A—C9—H9B108.0
C4—C3—H3B109.5C9—C10—C11111.2 (2)
C2—C3—H3B109.5C9—C10—H10A109.4
H3A—C3—H3B108.0C11—C10—H10A109.4
C5—C4—C3110.37 (19)C9—C10—H10B109.4
C5—C4—H4A109.6C11—C10—H10B109.4
C3—C4—H4A109.6H10A—C10—H10B108.0
C5—C4—H4B109.6C10—C11—C12112.01 (16)
C3—C4—H4B109.6C10—C11—H11A109.2
H4A—C4—H4B108.1C12—C11—H11A109.2
C4—C5—C6111.81 (16)C10—C11—H11B109.2
C4—C5—H5A109.3C12—C11—H11B109.2
C6—C5—H5A109.3H11A—C11—H11B107.9
C4—C5—H5B109.3C11—C12—C7110.37 (19)
C6—C5—H5B109.3C11—C12—H12A109.6
H5A—C5—H5B107.9C7—C12—H12A109.6
C1—C6—C5110.4 (2)C11—C12—H12B109.6
C1—C6—H6A109.6C7—C12—H12B109.6
C5—C6—H6A109.6H12A—C12—H12B108.1
C7—N1—C1—C663.7 (3)C1—N1—C7—C8−169.8 (2)
C7—N1—C1—C2−173.8 (2)C1—N1—C7—C1267.7 (3)
N1—C1—C2—C3−178.8 (2)N1—C7—C8—C9−179.26 (19)
C6—C1—C2—C3−56.3 (3)C12—C7—C8—C9−57.1 (2)
C1—C2—C3—C456.7 (3)C7—C8—C9—C1056.2 (3)
C2—C3—C4—C5−56.6 (2)C8—C9—C10—C11−54.7 (3)
C3—C4—C5—C656.5 (3)C9—C10—C11—C1254.4 (3)
N1—C1—C6—C5175.55 (16)C10—C11—C12—C7−55.0 (3)
C2—C1—C6—C555.4 (2)N1—C7—C12—C11177.21 (16)
C4—C5—C6—C1−55.7 (3)C8—C7—C12—C1156.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl1i0.87 (2)2.28 (3)3.157 (3)178 (2)
N1—H2N···Cl11.03 (3)2.15 (3)3.163 (3)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯Cl1i0.87 (2)2.28 (3)3.157 (3)178 (2)
N1—H2N⋯Cl11.03 (3)2.15 (3)3.163 (3)168 (2)

Symmetry code: (i) .

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