Literature DB >> 21522998

2-Chloro-N-[4-(3-methyl-3-phenyl-cyclo-but-yl)-1,3-thia-zol-2-yl]-N'-(naphthalen-1-yl-methyl-idene)acetohydrazide.

Ersin Inkaya, Muharrem Dinçer, Alaaddin Cukurovalı, Engin Yılmaz.   

Abstract

In the mol-ecular structure of the title hydrazide derivative, C(27)H(24)ClN(3)OS, the acetohydrazide group is approximately planar, with a maximum deviation of 0.017 (3) Å. The dihedral angle between the naphthyl-ene system and the phenyl ring is 78.91 (18)°. The crystal structure is stabilized by one weak inter-molecular C-H⋯O hydrogen bond and two aliphatic C-H⋯π hydrogen-bonding associations.

Entities:  

Year:  2011        PMID: 21522998      PMCID: PMC3051444          DOI: 10.1107/S1600536811000183

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications and bioactivity of hydrazide derivatives, see: Feng et al. (2006 ▶); Yang et al. (2007 ▶); Kamal et al. (2007 ▶); Masunari & Tavares (2007 ▶); Rando et al. (2002 ▶). For bond-length data, see: Demir et al. (2006 ▶).

Experimental

Crystal data

C27H24ClN3OS M = 474.00 Monoclinic, a = 7.498 (5) Å b = 12.823 (5) Å c = 24.924 (5) Å β = 92.185 (5)° V = 2394.6 (19) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 296 K 0.36 × 0.22 × 0.12 mm

Data collection

Stoe IPDS 2 CCD diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.797, T max = 0.961 12524 measured reflections 4206 independent reflections 1375 reflections with I > 2σ(I) R int = 0.135

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.156 S = 0.90 4206 reflections 298 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811000183/zs2087sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000183/zs2087Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H24ClN3OSF(000) = 992
Mr = 474.00Dx = 1.315 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 9611 reflections
a = 7.498 (5) Åθ = 1.6–27.3°
b = 12.823 (5) ŵ = 0.27 mm1
c = 24.924 (5) ÅT = 296 K
β = 92.185 (5)°Prism, pale brown
V = 2394.6 (19) Å30.36 × 0.22 × 0.12 mm
Z = 4
Stoe IPDS 2 CCD diffractometer4206 independent reflections
Radiation source: fine-focus sealed tube1375 reflections with I > 2σ(I)
plane graphiteRint = 0.135
rotation method scansθmax = 25.0°, θmin = 1.6°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −8→7
Tmin = 0.797, Tmax = 0.961k = −15→15
12524 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 0.90w = 1/[σ2(Fo2) + (0.0426P)2] where P = (Fo2 + 2Fc2)/3
4206 reflections(Δ/σ)max < 0.001
298 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.1715 (3)0.89358 (11)0.38214 (7)0.1256 (8)
S10.0165 (3)0.51892 (13)0.27709 (7)0.1101 (7)
N10.2484 (6)0.4174 (3)0.33380 (17)0.0726 (14)
N20.1837 (6)0.5845 (3)0.37084 (17)0.0721 (14)
N30.2157 (6)0.5688 (3)0.42568 (17)0.0760 (15)
O10.1257 (7)0.7154 (3)0.31249 (16)0.1143 (18)
C10.7867 (12)0.1538 (6)0.3653 (3)0.127 (3)
H10.83390.17240.33270.153*
C20.8984 (11)0.1442 (7)0.4126 (4)0.140 (3)
H21.01980.15770.41060.168*
C30.8345 (13)0.1166 (6)0.4591 (4)0.110 (3)
H30.91160.11000.48910.132*
C40.6583 (13)0.0977 (5)0.4638 (3)0.103 (2)
H40.61280.07890.49660.123*
C50.5461 (9)0.1073 (4)0.4178 (3)0.091 (2)
H50.42480.09430.42080.109*
C60.6064 (11)0.1348 (4)0.3692 (3)0.0798 (18)
C80.4959 (9)0.0466 (4)0.2850 (2)0.103 (2)
H7A0.61920.03270.27890.155*
H7B0.43250.05700.25130.155*
H7C0.4452−0.01140.30340.155*
C70.4812 (9)0.1451 (4)0.3194 (2)0.0763 (18)
C90.4947 (9)0.2463 (4)0.2867 (2)0.0884 (19)
H9A0.54750.23680.25210.106*
H9B0.55160.30330.30640.106*
C100.2863 (9)0.1759 (4)0.3310 (2)0.0788 (18)
H10A0.20160.11920.32610.095*
H10B0.27370.20930.36560.095*
C110.2862 (9)0.2530 (4)0.2835 (2)0.0811 (18)
H110.23940.21870.25080.097*
C120.1991 (8)0.3552 (4)0.2899 (2)0.0748 (18)
C130.0734 (9)0.3984 (4)0.2568 (2)0.097 (2)
H130.02410.36570.22640.117*
C140.1626 (8)0.5056 (4)0.3315 (2)0.0730 (17)
C150.1622 (8)0.6881 (4)0.3572 (2)0.082 (2)
C160.1878 (8)0.7630 (4)0.4043 (2)0.0866 (19)
H16A0.30400.75150.42170.104*
H16B0.09760.74970.43030.104*
C170.2259 (8)0.4801 (4)0.4471 (2)0.0809 (19)
H170.21390.41980.42650.097*
C180.2573 (8)0.4748 (4)0.5056 (2)0.0760 (17)
C190.2719 (9)0.5651 (5)0.5343 (3)0.108 (3)
H190.26000.62880.51670.129*
C200.3046 (11)0.5631 (6)0.5900 (3)0.135 (3)
H200.31440.62550.60890.162*
C210.3222 (10)0.4714 (7)0.6168 (3)0.123 (3)
H210.34540.47130.65370.148*
C220.3057 (8)0.3774 (5)0.5892 (2)0.0807 (18)
C230.2711 (8)0.3776 (4)0.5329 (2)0.0745 (17)
C240.2565 (8)0.2805 (4)0.5059 (2)0.092 (2)
H240.23920.27860.46870.111*
C250.2679 (10)0.1900 (5)0.5343 (3)0.106 (2)
H250.25220.12700.51630.127*
C260.3021 (10)0.1887 (6)0.5893 (3)0.115 (3)
H260.31260.12570.60760.138*
C270.3200 (9)0.2792 (7)0.6158 (3)0.106 (2)
H270.34240.27790.65270.127*
U11U22U33U12U13U23
Cl10.187 (2)0.0619 (9)0.1246 (15)−0.0055 (11)−0.0343 (14)0.0081 (10)
S10.1371 (17)0.1007 (12)0.0888 (12)0.0283 (12)−0.0443 (12)−0.0148 (10)
N10.097 (4)0.059 (3)0.061 (3)0.004 (3)−0.011 (3)−0.002 (2)
N20.106 (4)0.058 (3)0.052 (3)0.011 (3)−0.002 (3)0.003 (2)
N30.107 (4)0.069 (3)0.051 (3)−0.006 (3)−0.009 (3)0.004 (2)
O10.190 (5)0.081 (3)0.069 (3)0.020 (3)−0.018 (3)0.014 (2)
C10.104 (7)0.186 (8)0.093 (6)−0.001 (6)0.000 (6)−0.024 (5)
C20.092 (7)0.232 (10)0.097 (6)−0.001 (6)0.000 (6)−0.026 (7)
C30.111 (8)0.120 (6)0.097 (6)0.024 (6)−0.013 (6)−0.029 (5)
C40.123 (7)0.086 (4)0.097 (6)−0.002 (5)−0.018 (5)0.005 (4)
C50.112 (6)0.079 (4)0.080 (5)−0.007 (4)−0.014 (5)0.003 (4)
C60.096 (6)0.067 (4)0.077 (5)0.006 (4)0.001 (4)−0.017 (4)
C80.129 (6)0.091 (4)0.089 (5)0.017 (4)−0.008 (4)−0.029 (4)
C70.094 (6)0.068 (4)0.067 (4)0.004 (3)0.000 (4)−0.011 (3)
C90.106 (6)0.083 (4)0.077 (4)−0.005 (4)0.010 (4)−0.016 (4)
C100.099 (6)0.071 (3)0.067 (4)−0.004 (4)0.002 (4)−0.003 (3)
C110.110 (6)0.064 (4)0.069 (4)0.000 (4)−0.005 (4)−0.007 (3)
C120.105 (5)0.059 (3)0.060 (4)−0.006 (3)0.002 (4)−0.006 (3)
C130.128 (6)0.096 (4)0.067 (4)0.004 (4)−0.023 (4)−0.013 (4)
C140.108 (5)0.063 (4)0.046 (3)−0.003 (4)−0.013 (3)0.003 (3)
C150.112 (6)0.064 (4)0.069 (4)0.007 (3)−0.008 (4)0.008 (3)
C160.114 (6)0.061 (3)0.084 (4)0.006 (3)−0.010 (4)0.008 (3)
C170.126 (6)0.067 (4)0.048 (4)−0.013 (4)−0.012 (3)0.011 (3)
C180.100 (5)0.067 (4)0.060 (4)−0.009 (3)−0.005 (3)−0.003 (3)
C190.166 (8)0.077 (4)0.077 (5)−0.001 (4)−0.025 (5)−0.007 (4)
C200.198 (9)0.118 (6)0.087 (6)−0.016 (6)−0.029 (6)−0.023 (5)
C210.163 (8)0.145 (7)0.061 (5)−0.014 (6)−0.021 (5)−0.007 (5)
C220.089 (5)0.107 (5)0.046 (4)0.000 (4)−0.003 (3)0.012 (4)
C230.082 (5)0.079 (4)0.063 (4)−0.006 (3)−0.002 (3)0.006 (3)
C240.126 (6)0.078 (4)0.071 (4)0.008 (4)−0.010 (4)0.012 (4)
C250.145 (7)0.082 (5)0.091 (5)0.006 (4)−0.003 (5)0.021 (4)
C260.128 (7)0.108 (6)0.108 (7)0.008 (5)0.005 (5)0.037 (5)
C270.107 (6)0.138 (6)0.073 (5)0.010 (5)−0.006 (4)0.032 (5)
Cl1—C161.766 (5)C10—C111.541 (7)
S1—C131.686 (6)C10—H10A0.9700
S1—C141.720 (5)C10—H10B0.9700
N1—C141.301 (6)C11—C121.476 (7)
N1—C121.392 (6)C11—H110.9800
N2—C151.379 (6)C12—C131.349 (7)
N2—N31.393 (5)C13—H130.9300
N2—C141.412 (6)C15—C161.523 (7)
N3—C171.257 (5)C16—H16A0.9700
O1—C151.190 (6)C16—H16B0.9700
C1—C61.380 (9)C17—C181.470 (7)
C1—C21.425 (9)C17—H170.9300
C1—H10.9300C18—C191.364 (7)
C2—C31.321 (9)C18—C231.422 (7)
C2—H20.9300C19—C201.403 (8)
C3—C41.353 (9)C19—H190.9300
C3—H30.9300C20—C211.356 (8)
C4—C51.401 (8)C20—H200.9300
C4—H40.9300C21—C221.391 (8)
C5—C61.356 (8)C21—H210.9300
C5—H50.9300C22—C231.417 (7)
C6—C71.532 (8)C22—C271.425 (8)
C8—C71.532 (6)C23—C241.418 (7)
C8—H7A0.9600C24—C251.361 (7)
C8—H7B0.9600C24—H240.9300
C8—H7C0.9600C25—C261.384 (8)
C7—C91.539 (7)C25—H250.9300
C7—C101.552 (7)C26—C271.340 (8)
C9—C111.565 (8)C26—H260.9300
C9—H9A0.9700C27—H270.9300
C9—H9B0.9700
C13—S1—C1489.2 (3)C9—C11—H11110.0
C14—N1—C12110.4 (4)C13—C12—N1113.8 (5)
C15—N2—N3113.2 (4)C13—C12—C11126.9 (5)
C15—N2—C14120.6 (4)N1—C12—C11119.3 (5)
N3—N2—C14126.0 (4)C12—C13—S1111.8 (4)
C17—N3—N2123.5 (4)C12—C13—H13124.1
C6—C1—C2118.2 (8)S1—C13—H13124.1
C6—C1—H1120.9N1—C14—N2123.4 (4)
C2—C1—H1120.9N1—C14—S1114.8 (4)
C3—C2—C1121.9 (8)N2—C14—S1121.8 (4)
C3—C2—H2119.1O1—C15—N2122.4 (5)
C1—C2—H2119.1O1—C15—C16123.6 (5)
C2—C3—C4120.8 (8)N2—C15—C16114.1 (5)
C2—C3—H3119.6C15—C16—Cl1110.6 (4)
C4—C3—H3119.6C15—C16—H16A109.5
C3—C4—C5118.2 (8)Cl1—C16—H16A109.5
C3—C4—H4120.9C15—C16—H16B109.5
C5—C4—H4120.9Cl1—C16—H16B109.5
C6—C5—C4122.9 (7)H16A—C16—H16B108.1
C6—C5—H5118.5N3—C17—C18117.9 (5)
C4—C5—H5118.5N3—C17—H17121.0
C5—C6—C1118.0 (6)C18—C17—H17121.0
C5—C6—C7122.0 (7)C19—C18—C23119.4 (5)
C1—C6—C7119.9 (7)C19—C18—C17119.1 (5)
C7—C8—H7A109.5C23—C18—C17121.5 (5)
C7—C8—H7B109.5C18—C19—C20120.8 (6)
H7A—C8—H7B109.5C18—C19—H19119.6
C7—C8—H7C109.5C20—C19—H19119.6
H7A—C8—H7C109.5C21—C20—C19120.9 (6)
H7B—C8—H7C109.5C21—C20—H20119.6
C6—C7—C8109.1 (5)C19—C20—H20119.6
C6—C7—C9116.8 (5)C20—C21—C22120.2 (6)
C8—C7—C9113.0 (5)C20—C21—H21119.9
C6—C7—C10115.1 (5)C22—C21—H21119.9
C8—C7—C10113.7 (5)C21—C22—C23119.9 (6)
C9—C7—C1088.0 (4)C21—C22—C27122.1 (6)
C7—C9—C1189.2 (5)C23—C22—C27118.0 (6)
C7—C9—H9A113.8C22—C23—C24118.5 (5)
C11—C9—H9A113.8C22—C23—C18118.9 (5)
C7—C9—H9B113.8C24—C23—C18122.7 (5)
C11—C9—H9B113.8C25—C24—C23119.9 (5)
H9A—C9—H9B111.0C25—C24—H24120.0
C11—C10—C789.7 (5)C23—C24—H24120.0
C11—C10—H10A113.7C24—C25—C26122.2 (7)
C7—C10—H10A113.7C24—C25—H25118.9
C11—C10—H10B113.7C26—C25—H25118.9
C7—C10—H10B113.7C27—C26—C25119.2 (7)
H10A—C10—H10B110.9C27—C26—H26120.4
C12—C11—C10118.3 (5)C25—C26—H26120.4
C12—C11—C9119.2 (5)C26—C27—C22122.2 (6)
C10—C11—C987.4 (4)C26—C27—H27118.9
C12—C11—H11110.0C22—C27—H27118.9
C10—C11—H11110.0
C15—N2—N3—C17174.5 (6)C15—N2—C14—N1149.7 (6)
C14—N2—N3—C17−1.6 (9)N3—N2—C14—N1−34.4 (9)
C6—C1—C2—C30.9 (12)C15—N2—C14—S1−31.5 (8)
C1—C2—C3—C4−1.0 (13)N3—N2—C14—S1144.4 (5)
C2—C3—C4—C50.6 (12)C13—S1—C14—N10.5 (5)
C3—C4—C5—C6−0.2 (10)C13—S1—C14—N2−178.4 (5)
C4—C5—C6—C10.1 (10)N3—N2—C15—O1−176.4 (6)
C4—C5—C6—C7−179.9 (5)C14—N2—C15—O10.0 (10)
C2—C1—C6—C5−0.4 (10)N3—N2—C15—C163.1 (7)
C2—C1—C6—C7179.5 (6)C14—N2—C15—C16179.4 (5)
C5—C6—C7—C8−100.5 (7)O1—C15—C16—Cl1−4.2 (9)
C1—C6—C7—C879.6 (7)N2—C15—C16—Cl1176.3 (4)
C5—C6—C7—C9129.9 (6)N2—N3—C17—C18−179.0 (5)
C1—C6—C7—C9−50.1 (8)N3—C17—C18—C190.8 (9)
C5—C6—C7—C1028.7 (8)N3—C17—C18—C23−179.8 (6)
C1—C6—C7—C10−151.2 (6)C23—C18—C19—C201.6 (10)
C6—C7—C9—C11−135.0 (6)C17—C18—C19—C20−179.0 (7)
C8—C7—C9—C1197.2 (5)C18—C19—C20—C21−0.1 (13)
C10—C7—C9—C11−17.8 (4)C19—C20—C21—C22−0.8 (13)
C6—C7—C10—C11136.9 (5)C20—C21—C22—C230.2 (11)
C8—C7—C10—C11−96.2 (5)C20—C21—C22—C27−178.8 (8)
C9—C7—C10—C1118.1 (4)C21—C22—C23—C24179.5 (6)
C7—C10—C11—C12−139.8 (5)C27—C22—C23—C24−1.4 (9)
C7—C10—C11—C9−17.8 (4)C21—C22—C23—C181.2 (9)
C7—C9—C11—C12139.1 (5)C27—C22—C23—C18−179.7 (6)
C7—C9—C11—C1017.9 (4)C19—C18—C23—C22−2.1 (9)
C14—N1—C12—C13−1.6 (7)C17—C18—C23—C22178.5 (6)
C14—N1—C12—C11177.6 (5)C19—C18—C23—C24179.7 (6)
C10—C11—C12—C13−127.6 (7)C17—C18—C23—C240.3 (9)
C9—C11—C12—C13128.4 (6)C22—C23—C24—C252.9 (9)
C10—C11—C12—N153.3 (8)C18—C23—C24—C25−178.9 (6)
C9—C11—C12—N1−50.8 (7)C23—C24—C25—C26−3.2 (11)
N1—C12—C13—S12.0 (7)C24—C25—C26—C271.8 (12)
C11—C12—C13—S1−177.2 (5)C25—C26—C27—C22−0.3 (12)
C14—S1—C13—C12−1.4 (5)C21—C22—C27—C26179.2 (8)
C12—N1—C14—N2179.4 (5)C23—C22—C27—C260.2 (10)
C12—N1—C14—S10.5 (6)
Cg1 and Cg2 are the centroids of the C12/C13/S1/C14/N1 and C22–C27 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C13—H13···O1i0.932.413.243 (7)148.
C8—H7A···Cg1ii0.962.943.748 (3)143
C16—H16B···Cg2iii0.972.933.740 (8)142
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C12/C13/S1/C14/N1 and C22–C27 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯O1i0.932.413.243 (7)148
C8—H7ACg1ii0.962.943.748 (3)143
C16—H16BCg2iii0.972.933.740 (8)142

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Potential tuberculostatic agents. Topliss application on benzoic acid [(5-nitro-thiophen-2-yl)-methylene]-hydrazide series.

Authors:  Daniela G Rando; Dayse N Sato; Leonardo Siqueira; Alberto Malvezzi; Clarice Q F Leite; Antonia T do Amaral; Elizabeth I Ferreira; Leoberto C Tavares
Journal:  Bioorg Med Chem       Date:  2002-03       Impact factor: 3.641

3.  Synthesis of a new class of 2-anilino substituted nicotinyl arylsulfonylhydrazides as potential anticancer and antibacterial agents.

Authors:  Ahmed Kamal; M Naseer A Khan; K Srinivasa Reddy; K Rohini
Journal:  Bioorg Med Chem       Date:  2006-10-18       Impact factor: 3.641

4.  A new class of nifuroxazide analogues: synthesis of 5-nitrothiophene derivatives with antimicrobial activity against multidrug-resistant Staphylococcus aureus.

Authors:  Andrea Masunari; Leoberto Costa Tavares
Journal:  Bioorg Med Chem       Date:  2007-03-25       Impact factor: 3.641

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Crystal structure and Hirshfeld surface analysis of (Z)-4-{[4-(3-methyl-3-phenyl-cyclo-but-yl)thia-zol-2-yl]amino}-4-oxobut-2-enoic acid.

Authors:  Okan Simsek; Muharrem Dincer; Necmi Dege; Eiad Saif; Ibrahim Yilmaz; Alaaddin Cukurovali
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-01-07
  1 in total

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