Literature DB >> 21522967

3-[(Furan-2-yl-methyl-idene)amino]-1-(4-methyl-phen-yl)thio-urea.

Yan-Ling Zhang1, Fu-Juan Zhang, Zhi-Hong Xu, Feng-Ling Yang.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C(13)H(13)N(3)OS, which was obtained from a condensation reaction of N-(p-tol-yl)hydrazinecarbothio-amide and furfural. The dihedral angles between the mean planes of the tolyl ring and the (furan-2-yl-methyl-ene)hydrazine unit are 39.83 (8) and 48.95 (7)° in the two mol-ecules. The mol-ecules both exhibit an E configuration. In the crystal, inter-molecular N-H⋯N and N-H⋯S hydrogen bonds connect the two independent mol-ecules.

Entities:  

Year:  2011        PMID: 21522967      PMCID: PMC3051554          DOI: 10.1107/S1600536811000110

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of thio­semicarbazones, see: Okabe et al. (1993 ▶); Hu et al. (2006 ▶). For related structures, see: Zhang et al. (2005 ▶); Shan et al. (2006 ▶).

Experimental

Crystal data

C13H13N3OS M = 259.32 Monoclinic, a = 12.9464 (3) Å b = 13.8613 (3) Å c = 16.6155 (5) Å β = 118.028 (2)° V = 2632.01 (12) Å3 Z = 8 Cu Kα radiation μ = 2.12 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.677, T max = 0.677 19253 measured reflections 4697 independent reflections 3878 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.147 S = 1.03 4697 reflections 328 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000110/kp2296sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000110/kp2296Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13N3OSF(000) = 1088
Mr = 259.32Dx = 1.309 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 7546 reflections
a = 12.9464 (3) Åθ = 3.0–72.2°
b = 13.8613 (3) ŵ = 2.12 mm1
c = 16.6155 (5) ÅT = 293 K
β = 118.028 (2)°Prismatic, colorless
V = 2632.01 (12) Å30.20 × 0.20 × 0.20 mm
Z = 8
Oxford Diffraction Xcalibur Eos Gemini diffractometer4697 independent reflections
Radiation source: fine-focus sealed tube3878 reflections with I > 2σ(I)
graphiteRint = 0.042
ω scansθmax = 67.1°, θmin = 3.9°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −15→15
Tmin = 0.677, Tmax = 0.677k = −16→16
19253 measured reflectionsl = −19→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
4697 reflectionsΔρmax = 0.19 e Å3
328 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0044 (4)
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27-08-2010 CrysAlis171 .NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.12468 (5)0.04591 (4)0.57517 (3)0.05268 (19)
S1A0.30556 (5)0.53789 (4)0.36034 (4)0.0548 (2)
O10.63171 (13)0.26407 (12)0.80209 (9)0.0551 (4)
O1A−0.24494 (16)0.36883 (14)0.18097 (11)0.0676 (5)
N10.42256 (15)0.16907 (13)0.73490 (11)0.0482 (4)
N1A−0.02089 (16)0.45411 (12)0.24339 (12)0.0466 (4)
N20.32088 (16)0.11669 (14)0.70435 (12)0.0526 (4)
H20.30890.08110.74150.063*
N2A0.08617 (16)0.48994 (14)0.25989 (11)0.0488 (4)
H2A0.09530.51220.21530.059*
N30.26010 (16)0.18718 (14)0.56597 (12)0.0534 (4)
H30.31720.22630.59530.064*
N3A0.15430 (16)0.45539 (14)0.40998 (12)0.0516 (4)
H3A0.08480.43310.39130.062*
C10.7393 (2)0.3023 (2)0.85542 (18)0.0656 (6)
H10.77720.34530.83510.079*
C1A−0.3614 (3)0.3434 (2)0.12705 (19)0.0734 (7)
H1A−0.40450.30370.14530.088*
C20.7830 (2)0.2704 (2)0.93994 (16)0.0684 (7)
H2B0.85520.28640.98840.082*
C2A−0.4018 (2)0.3844 (2)0.04573 (17)0.0697 (7)
H2AA−0.47720.3789−0.00250.084*
C30.6988 (2)0.20724 (19)0.94272 (15)0.0600 (6)
H3B0.70470.17370.99320.072*
C3A−0.3098 (2)0.43732 (19)0.04610 (15)0.0568 (5)
H3AA−0.31260.4738−0.00190.068*
C40.60805 (18)0.20553 (15)0.85729 (13)0.0456 (4)
C4A−0.2166 (2)0.42593 (15)0.12823 (14)0.0488 (5)
C50.49801 (19)0.15645 (15)0.81887 (13)0.0478 (5)
H50.48090.11500.85500.057*
C5A−0.10118 (19)0.46325 (15)0.16071 (14)0.0475 (5)
H5A−0.08330.49580.11990.057*
C60.23996 (18)0.12135 (15)0.61564 (13)0.0457 (4)
C6A0.17739 (18)0.49072 (14)0.34471 (13)0.0434 (4)
C70.19719 (18)0.19935 (14)0.46945 (14)0.0468 (4)
C7A0.22866 (19)0.45001 (15)0.50532 (14)0.0463 (5)
C80.2592 (2)0.20326 (18)0.42067 (16)0.0570 (5)
H80.34050.19960.45120.068*
C8A0.1803 (2)0.4686 (2)0.56153 (17)0.0674 (7)
H8A0.10160.48510.53620.081*
C90.2013 (2)0.21261 (18)0.32708 (17)0.0622 (6)
H90.24430.21550.29540.075*
C9A0.2462 (3)0.4631 (2)0.65487 (17)0.0696 (7)
H9A0.21140.47640.69150.084*
C100.0806 (2)0.21771 (16)0.27934 (15)0.0572 (6)
C10A0.3629 (2)0.43844 (17)0.69498 (15)0.0535 (5)
C110.0199 (2)0.21777 (18)0.32891 (16)0.0602 (6)
H11A−0.06120.22330.29830.072*
C11A0.41067 (19)0.41712 (16)0.63797 (14)0.0508 (5)
H110.48880.39870.66340.061*
C120.07673 (19)0.20985 (17)0.42347 (15)0.0550 (5)
H12A0.03410.21160.45550.066*
C12A0.34502 (19)0.42261 (16)0.54403 (14)0.0485 (5)
H120.37900.40790.50710.058*
C130.0164 (3)0.2217 (2)0.17613 (17)0.0784 (8)
H13D0.05400.26750.15510.118*
H13E−0.06320.24100.15600.118*
H13F0.01770.15910.15190.118*
C13A0.4365 (3)0.4347 (2)0.79706 (17)0.0710 (7)
H13A0.39250.45980.82550.106*
H13B0.50580.47280.81490.106*
H13C0.45810.36910.81590.106*
U11U22U33U12U13U23
S10.0500 (3)0.0630 (3)0.0400 (3)−0.0190 (2)0.0169 (2)−0.0050 (2)
S1A0.0495 (3)0.0691 (4)0.0465 (3)−0.0145 (2)0.0231 (2)−0.0043 (2)
O10.0478 (8)0.0680 (10)0.0420 (7)−0.0072 (7)0.0149 (6)0.0030 (6)
O1A0.0630 (11)0.0806 (12)0.0538 (9)−0.0012 (9)0.0230 (8)0.0119 (8)
N10.0433 (9)0.0527 (9)0.0410 (8)−0.0064 (7)0.0135 (7)−0.0019 (7)
N1A0.0440 (9)0.0521 (9)0.0412 (9)0.0009 (7)0.0178 (8)0.0003 (7)
N20.0482 (10)0.0609 (10)0.0411 (9)−0.0140 (8)0.0148 (8)0.0005 (7)
N2A0.0448 (9)0.0615 (10)0.0390 (8)−0.0020 (8)0.0188 (7)0.0046 (7)
N30.0454 (9)0.0605 (11)0.0422 (9)−0.0160 (8)0.0107 (7)0.0014 (7)
N3A0.0401 (9)0.0709 (12)0.0401 (9)−0.0100 (8)0.0156 (8)0.0018 (7)
C10.0520 (13)0.0771 (16)0.0630 (14)−0.0173 (12)0.0232 (11)−0.0052 (12)
C1A0.0677 (16)0.0854 (18)0.0701 (16)−0.0179 (14)0.0349 (14)0.0011 (14)
C20.0456 (12)0.0907 (19)0.0490 (12)−0.0128 (12)0.0056 (10)−0.0063 (12)
C2A0.0501 (13)0.0953 (19)0.0528 (13)−0.0161 (13)0.0151 (11)−0.0055 (12)
C30.0540 (13)0.0713 (14)0.0393 (10)−0.0026 (11)0.0091 (9)0.0042 (10)
C3A0.0462 (12)0.0749 (14)0.0402 (10)−0.0061 (11)0.0127 (9)0.0084 (10)
C40.0442 (11)0.0475 (10)0.0390 (10)0.0015 (8)0.0145 (8)−0.0006 (8)
C4A0.0487 (11)0.0518 (11)0.0423 (10)0.0035 (9)0.0183 (9)−0.0001 (8)
C50.0480 (11)0.0466 (10)0.0431 (10)−0.0004 (9)0.0168 (9)0.0010 (8)
C5A0.0450 (11)0.0540 (11)0.0390 (10)0.0036 (8)0.0161 (9)0.0031 (8)
C60.0438 (10)0.0498 (10)0.0411 (10)−0.0050 (8)0.0181 (8)−0.0058 (8)
C6A0.0444 (10)0.0465 (10)0.0398 (9)0.0004 (8)0.0201 (8)−0.0028 (8)
C70.0434 (10)0.0448 (10)0.0435 (10)−0.0038 (8)0.0132 (9)0.0027 (8)
C7A0.0431 (10)0.0542 (11)0.0392 (10)−0.0071 (8)0.0172 (9)−0.0004 (8)
C80.0431 (11)0.0670 (14)0.0569 (12)0.0036 (10)0.0203 (10)0.0062 (10)
C8A0.0452 (12)0.109 (2)0.0491 (13)0.0111 (12)0.0232 (11)0.0067 (12)
C90.0703 (15)0.0666 (14)0.0552 (13)0.0088 (12)0.0341 (12)0.0059 (11)
C9A0.0627 (15)0.105 (2)0.0467 (13)0.0066 (14)0.0306 (12)0.0004 (12)
C100.0662 (14)0.0475 (11)0.0450 (11)0.0019 (10)0.0155 (10)0.0034 (9)
C10A0.0554 (13)0.0565 (12)0.0429 (11)−0.0058 (10)0.0183 (10)−0.0015 (9)
C110.0450 (12)0.0625 (13)0.0554 (13)−0.0003 (10)0.0090 (10)0.0104 (10)
C11A0.0441 (11)0.0530 (11)0.0490 (11)0.0009 (9)0.0166 (9)0.0041 (9)
C120.0434 (11)0.0656 (13)0.0532 (12)−0.0014 (10)0.0204 (10)0.0076 (10)
C12A0.0465 (11)0.0553 (11)0.0440 (10)0.0015 (9)0.0217 (9)0.0022 (8)
C130.095 (2)0.0716 (16)0.0469 (13)0.0048 (15)0.0153 (13)0.0059 (11)
C13A0.0754 (17)0.0839 (17)0.0437 (12)−0.0012 (14)0.0197 (12)−0.0006 (11)
S1—C61.682 (2)C4—C51.430 (3)
S1A—C6A1.686 (2)C4A—C5A1.427 (3)
O1—C11.359 (3)C5—H50.9300
O1—C41.363 (3)C5A—H5A0.9300
O1A—C4A1.353 (3)C7—C121.385 (3)
O1A—C1A1.389 (3)C7—C81.385 (3)
N1—C51.285 (3)C7A—C8A1.371 (3)
N1—N21.375 (2)C7A—C12A1.384 (3)
N1A—C5A1.281 (3)C8—C91.379 (3)
N1A—N2A1.373 (2)C8—H80.9300
N2—C61.350 (3)C8A—C9A1.377 (4)
N2—H20.8599C8A—H8A0.9300
N2A—C6A1.348 (3)C9—C101.382 (4)
N2A—H2A0.8600C9—H90.9300
N3—C61.336 (3)C9A—C10A1.377 (4)
N3—C71.427 (3)C9A—H9A0.9300
N3—H30.8600C10—C111.380 (4)
N3A—C6A1.345 (3)C10—C131.515 (3)
N3A—C7A1.417 (3)C10A—C11A1.385 (3)
N3A—H3A0.8600C10A—C13A1.506 (3)
C1—C21.320 (4)C11—C121.391 (3)
C1—H10.9300C11—H11A0.9300
C1A—C2A1.326 (4)C11A—C12A1.385 (3)
C1A—H1A0.9300C11A—H110.9300
C2—C31.415 (4)C12—H12A0.9300
C2—H2B0.9300C12A—H120.9300
C2A—C3A1.397 (3)C13—H13D0.9600
C2A—H2AA0.9300C13—H13E0.9600
C3—C41.352 (3)C13—H13F0.9600
C3—H3B0.9300C13A—H13A0.9600
C3A—C4A1.340 (3)C13A—H13B0.9600
C3A—H3AA0.9300C13A—H13C0.9600
C1—O1—C4106.22 (18)N3A—C6A—S1A126.32 (16)
C4A—O1A—C1A105.83 (19)N2A—C6A—S1A118.65 (15)
C5—N1—N2115.88 (17)C12—C7—C8119.1 (2)
C5A—N1A—N2A114.36 (17)C12—C7—N3122.2 (2)
C6—N2—N1119.67 (17)C8—C7—N3118.73 (19)
C6—N2—H2120.2C8A—C7A—C12A118.7 (2)
N1—N2—H2120.1C8A—C7A—N3A117.6 (2)
C6A—N2A—N1A121.19 (16)C12A—C7A—N3A123.58 (19)
C6A—N2A—H2A119.4C9—C8—C7120.4 (2)
N1A—N2A—H2A119.5C9—C8—H8119.8
C6—N3—C7126.95 (18)C7—C8—H8119.8
C6—N3—H3116.5C7A—C8A—C9A121.1 (2)
C7—N3—H3116.5C7A—C8A—H8A119.4
C6A—N3A—C7A128.95 (18)C9A—C8A—H8A119.4
C6A—N3A—H3A115.5C8—C9—C10121.4 (2)
C7A—N3A—H3A115.5C8—C9—H9119.3
C2—C1—O1111.0 (2)C10—C9—H9119.3
C2—C1—H1124.5C10A—C9A—C8A121.2 (2)
O1—C1—H1124.5C10A—C9A—H9A119.4
C2A—C1A—O1A109.7 (2)C8A—C9A—H9A119.4
C2A—C1A—H1A125.1C11—C10—C9117.7 (2)
O1A—C1A—H1A125.1C11—C10—C13120.8 (2)
C1—C2—C3106.9 (2)C9—C10—C13121.5 (3)
C1—C2—H2B126.5C9A—C10A—C11A117.6 (2)
C3—C2—H2B126.5C9A—C10A—C13A121.6 (2)
C1A—C2A—C3A107.0 (2)C11A—C10A—C13A120.9 (2)
C1A—C2A—H2AA126.5C10—C11—C12121.8 (2)
C3A—C2A—H2AA126.5C10—C11—H11A119.1
C4—C3—C2106.2 (2)C12—C11—H11A119.1
C4—C3—H3B126.9C12A—C11A—C10A121.6 (2)
C2—C3—H3B126.9C12A—C11A—H11119.2
C4A—C3A—C2A107.5 (2)C10A—C11A—H11119.2
C4A—C3A—H3AA126.3C7—C12—C11119.5 (2)
C2A—C3A—H3AA126.3C7—C12—H12A120.3
C3—C4—O1109.7 (2)C11—C12—H12A120.3
C3—C4—C5132.0 (2)C7A—C12A—C11A119.75 (19)
O1—C4—C5118.33 (17)C7A—C12A—H12120.1
C3A—C4A—O1A109.9 (2)C11A—C12A—H12120.1
C3A—C4A—C5A128.6 (2)C10—C13—H13D109.5
O1A—C4A—C5A121.45 (19)C10—C13—H13E109.5
N1—C5—C4120.63 (19)H13D—C13—H13E109.5
N1—C5—H5119.7C10—C13—H13F109.5
C4—C5—H5119.7H13D—C13—H13F109.5
N1A—C5A—C4A123.2 (2)H13E—C13—H13F109.5
N1A—C5A—H5A118.4C10A—C13A—H13A109.5
C4A—C5A—H5A118.4C10A—C13A—H13B109.5
N3—C6—N2115.50 (18)H13A—C13A—H13B109.5
N3—C6—S1124.88 (16)C10A—C13A—H13C109.5
N2—C6—S1119.62 (16)H13A—C13A—H13C109.5
N3A—C6A—N2A115.00 (18)H13B—C13A—H13C109.5
C5—N1—N2—C6−176.10 (19)C7A—N3A—C6A—S1A0.8 (3)
C5A—N1A—N2A—C6A176.01 (19)N1A—N2A—C6A—N3A−0.8 (3)
C4—O1—C1—C20.2 (3)N1A—N2A—C6A—S1A−178.76 (15)
C4A—O1A—C1A—C2A−0.7 (3)C6—N3—C7—C1253.4 (3)
O1—C1—C2—C3−0.2 (3)C6—N3—C7—C8−128.4 (3)
O1A—C1A—C2A—C3A0.3 (4)C6A—N3A—C7A—C8A140.9 (3)
C1—C2—C3—C40.1 (3)C6A—N3A—C7A—C12A−42.4 (3)
C1A—C2A—C3A—C4A0.2 (3)C12—C7—C8—C9−3.2 (4)
C2—C3—C4—O10.0 (3)N3—C7—C8—C9178.4 (2)
C2—C3—C4—C5−178.9 (2)C12A—C7A—C8A—C9A2.0 (4)
C1—O1—C4—C3−0.1 (3)N3A—C7A—C8A—C9A178.8 (3)
C1—O1—C4—C5179.0 (2)C7—C8—C9—C10−0.4 (4)
C2A—C3A—C4A—O1A−0.6 (3)C7A—C8A—C9A—C10A−0.3 (5)
C2A—C3A—C4A—C5A177.9 (2)C8—C9—C10—C113.0 (4)
C1A—O1A—C4A—C3A0.8 (3)C8—C9—C10—C13−176.1 (2)
C1A—O1A—C4A—C5A−177.9 (2)C8A—C9A—C10A—C11A−1.5 (4)
N2—N1—C5—C4178.51 (19)C8A—C9A—C10A—C13A178.5 (3)
C3—C4—C5—N1177.4 (2)C9—C10—C11—C12−2.1 (4)
O1—C4—C5—N1−1.5 (3)C13—C10—C11—C12177.1 (2)
N2A—N1A—C5A—C4A176.32 (19)C9A—C10A—C11A—C12A1.6 (4)
C3A—C4A—C5A—N1A174.2 (2)C13A—C10A—C11A—C12A−178.3 (2)
O1A—C4A—C5A—N1A−7.4 (3)C8—C7—C12—C114.1 (3)
C7—N3—C6—N2171.9 (2)N3—C7—C12—C11−177.6 (2)
C7—N3—C6—S1−7.4 (3)C10—C11—C12—C7−1.5 (4)
N1—N2—C6—N3−7.8 (3)C8A—C7A—C12A—C11A−1.8 (3)
N1—N2—C6—S1171.49 (16)N3A—C7A—C12A—C11A−178.48 (19)
C7A—N3A—C6A—N2A−177.0 (2)C10A—C11A—C12A—C7A0.0 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2···S1Ai0.862.593.4397 (19)171
N2A—H2A···S1ii0.862.663.3696 (17)141
N3A—H3A···N1A0.862.202.628 (2)111
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1Ai0.862.593.4397 (19)171
N2A—H2A⋯S1ii0.862.663.3696 (17)141
N3A—H3A⋯N1A0.862.202.628 (2)111

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Synthesis and anticancer activity of thiosemicarbazones.

Authors:  Wei-xiao Hu; Wei Zhou; Chun-nian Xia; Xi Wen
Journal:  Bioorg Med Chem Lett       Date:  2006-02-03       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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