Literature DB >> 21522933

(R)-(+)-Dimeth-yl[4-oxido-2-oxo-1-(1-phenyl-eth-yl)-1,2,5,6-tetra-hydro-pyridin-3-yl]sulfonium.

Paola G Gordillo1, Joel L Terán, Jorge R Juárez, Angel Mendoza.   

Abstract

In the title zwitterionic compound, C(15)H(19)NO(2)S, the six-membered heterocycle adopts a sofa conformation. The negative charge is delocalized along the carbonyl and enolate system on the ring and the positive charge is localized on the S atom. Two inter-molecular C-H⋯O inter-actions help to establish the packing.

Entities:  

Year:  2011        PMID: 21522933      PMCID: PMC3051604          DOI: 10.1107/S1600536810052955

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the synthesis of chiral non-racemic zwitterionic 4-alk­oxy-3-sulfonium ylide pyridine-2-ones, see: Zang et al. (2008 ▶); Kappe et al. (1983 ▶); Palillero et al. (2009 ▶). For the biological activity of related structures, see: Basco et al. (1994 ▶); Koruzňjak et al., 2003 ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H19NO2S M = 277.37 Orthorhombic, a = 5.9860 (17) Å b = 7.4050 (14) Å c = 31.589 (5) Å V = 1400.2 (5) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 293 K 0.5 × 0.4 × 0.2 mm

Data collection

Siemens P4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.728, T max = 0.846 3016 measured reflections 2683 independent reflections 1928 reflections with I > 2σ(I) R int = 0.045 3 standard reflections every 97 reflections intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.153 S = 1.03 2683 reflections 172 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.39 e Å−3 Absolute structure: Flack (1983 ▶), 532 Friedel pairs Flack parameter: −0.01 (16) Data collection: XSCANS (Siemens, 1994 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052955/bt5438sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052955/bt5438Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H19NO2SF(000) = 592
Mr = 277.37Dx = 1.316 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 46 reflections
a = 5.9860 (17) Åθ = 21.3–35.1°
b = 7.4050 (14) ŵ = 0.23 mm1
c = 31.589 (5) ÅT = 293 K
V = 1400.2 (5) Å3Prism, colorless
Z = 40.5 × 0.4 × 0.2 mm
Siemens P4 diffractometerRint = 0.045
graphiteθmax = 29.0°, θmin = 2.6°
2θ/ω scansh = −1→8
Absorption correction: ψ scan (North et al., 1968)k = −1→10
Tmin = 0.728, Tmax = 0.846l = −43→1
3016 measured reflections3 standard reflections every 97 reflections
2683 independent reflections intensity decay: 3%
1928 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H-atom parameters constrained
wR(F2) = 0.153w = 1/[σ2(Fo2) + (0.0631P)2 + 1.1965P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2683 reflectionsΔρmax = 0.63 e Å3
172 parametersΔρmin = −0.39 e Å3
0 restraintsAbsolute structure: Flack (1983), 532 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (16)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.10027 (19)0.87732 (14)0.03372 (3)0.0323 (2)
O10.8859 (6)0.5383 (4)0.05505 (8)0.0393 (7)
N10.7630 (6)0.6122 (4)0.12114 (10)0.0300 (7)
O21.0851 (7)1.1013 (4)0.11356 (10)0.0511 (9)
C90.8558 (7)0.3759 (6)0.19114 (12)0.0351 (9)
H90.97230.44340.17980.042*
C10.8724 (7)0.6511 (5)0.08437 (10)0.0278 (8)
C60.6341 (8)0.4423 (5)0.12418 (12)0.0345 (10)
H60.70110.35720.10410.041*
C40.8971 (9)0.8843 (6)0.15731 (11)0.0373 (9)
H4A1.01240.81990.17270.045*
H4B0.85010.98630.17440.045*
C30.9911 (8)0.9518 (6)0.11576 (12)0.0340 (9)
C80.6557 (7)0.3579 (5)0.16847 (12)0.0305 (9)
C100.8816 (9)0.2937 (6)0.23044 (13)0.0404 (10)
H101.01430.30770.24540.049*
C151.3821 (8)0.9447 (7)0.04512 (13)0.0427 (11)
H15A1.45860.97110.01910.064*
H15B1.45780.84870.05960.064*
H15C1.38051.05050.06270.064*
C20.9708 (7)0.8304 (5)0.08140 (11)0.0285 (9)
C50.7006 (8)0.7604 (6)0.14990 (12)0.0345 (10)
H5A0.65070.71080.17670.041*
H5B0.5780.82860.13770.041*
C130.4867 (8)0.2558 (6)0.18589 (14)0.0396 (10)
H130.35230.24260.17140.048*
C120.5156 (9)0.1720 (6)0.22507 (14)0.0445 (11)
H120.4010.10210.23630.053*
C110.7107 (9)0.1916 (6)0.24725 (14)0.0443 (12)
H110.72780.13630.27350.053*
C140.9890 (9)1.0887 (7)0.01517 (15)0.0544 (13)
H14A1.05691.1193−0.01140.082*
H14B1.02051.18170.03550.082*
H14C0.83041.0780.01150.082*
C70.3927 (9)0.4733 (7)0.10987 (16)0.0524 (13)
H7A0.39220.52520.0820.079*
H7B0.31990.55390.12930.079*
H7C0.31470.360.10940.079*
U11U22U33U12U13U23
S10.0354 (5)0.0314 (4)0.0300 (4)−0.0059 (5)0.0034 (5)0.0035 (4)
O10.056 (2)0.0317 (14)0.0304 (13)−0.0091 (19)0.0042 (15)−0.0028 (11)
N10.0319 (17)0.0246 (15)0.0334 (15)−0.0086 (18)0.0047 (14)0.0014 (14)
O20.066 (2)0.0325 (15)0.0543 (17)−0.023 (2)0.0150 (19)−0.0100 (13)
C90.034 (2)0.0334 (19)0.0379 (19)−0.002 (2)0.0054 (17)0.0015 (18)
C10.030 (2)0.0288 (18)0.0245 (15)−0.003 (2)−0.0033 (16)0.0029 (14)
C60.040 (3)0.0282 (18)0.0352 (19)−0.010 (2)0.0001 (19)0.0041 (16)
C40.052 (2)0.0315 (18)0.0287 (17)−0.007 (3)0.009 (2)−0.0067 (16)
C30.037 (2)0.0305 (19)0.0348 (19)−0.003 (2)0.0052 (19)−0.0037 (17)
C80.036 (2)0.0214 (17)0.0341 (18)0.0030 (19)0.0052 (17)−0.0042 (15)
C100.042 (2)0.041 (2)0.039 (2)0.006 (3)−0.001 (2)−0.0008 (18)
C150.031 (2)0.055 (3)0.042 (2)−0.006 (3)0.008 (2)0.001 (2)
C20.033 (2)0.0234 (17)0.0292 (17)−0.0035 (18)0.0036 (16)0.0020 (14)
C50.042 (2)0.030 (2)0.0321 (19)−0.002 (2)0.0077 (19)−0.0005 (16)
C130.034 (2)0.037 (2)0.048 (2)−0.003 (2)0.001 (2)0.0091 (19)
C120.046 (3)0.040 (2)0.048 (3)−0.006 (3)0.012 (2)0.013 (2)
C110.057 (3)0.041 (2)0.035 (2)0.013 (3)0.009 (2)0.0050 (19)
C140.051 (3)0.057 (3)0.055 (3)0.004 (3)0.004 (2)0.026 (2)
C70.042 (3)0.057 (3)0.058 (3)−0.016 (3)−0.015 (3)0.019 (2)
S1—C21.729 (4)C8—C131.378 (6)
S1—C151.796 (5)C10—C111.379 (7)
S1—C141.799 (5)C10—H100.93
O1—C11.250 (4)C15—H15A0.96
N1—C11.364 (5)C15—H15B0.96
N1—C51.473 (5)C15—H15C0.96
N1—C61.479 (5)C5—H5A0.97
O2—C31.244 (5)C5—H5B0.97
C9—C101.391 (6)C13—C121.395 (6)
C9—C81.402 (6)C13—H130.93
C9—H90.93C12—C111.369 (7)
C1—C21.455 (5)C12—H120.93
C6—C71.531 (7)C11—H110.93
C6—C81.538 (5)C14—H14A0.96
C6—H60.98C14—H14B0.96
C4—C51.510 (6)C14—H14C0.96
C4—C31.513 (5)C7—H7A0.96
C4—H4A0.97C7—H7B0.96
C4—H4B0.97C7—H7C0.96
C3—C21.415 (5)
C2—S1—C15107.6 (2)H15A—C15—H15B109.5
C2—S1—C14107.0 (2)S1—C15—H15C109.5
C15—S1—C1499.9 (2)H15A—C15—H15C109.5
C1—N1—C5119.4 (3)H15B—C15—H15C109.5
C1—N1—C6119.0 (3)C3—C2—C1124.4 (3)
C5—N1—C6117.5 (3)C3—C2—S1120.1 (3)
C10—C9—C8120.6 (4)C1—C2—S1114.9 (3)
C10—C9—H9119.7N1—C5—C4110.5 (3)
C8—C9—H9119.7N1—C5—H5A109.5
O1—C1—N1121.4 (3)C4—C5—H5A109.5
O1—C1—C2122.4 (3)N1—C5—H5B109.5
N1—C1—C2116.2 (3)C4—C5—H5B109.5
N1—C6—C7110.2 (4)H5A—C5—H5B108.1
N1—C6—C8111.2 (3)C8—C13—C12120.5 (4)
C7—C6—C8114.1 (4)C8—C13—H13119.8
N1—C6—H6107C12—C13—H13119.8
C7—C6—H6107C11—C12—C13120.9 (4)
C8—C6—H6107C11—C12—H12119.6
C5—C4—C3110.8 (3)C13—C12—H12119.6
C5—C4—H4A109.5C12—C11—C10119.6 (4)
C3—C4—H4A109.5C12—C11—H11120.2
C5—C4—H4B109.5C10—C11—H11120.2
C3—C4—H4B109.5S1—C14—H14A109.5
H4A—C4—H4B108.1S1—C14—H14B109.5
O2—C3—C2124.2 (4)H14A—C14—H14B109.5
O2—C3—C4120.7 (4)S1—C14—H14C109.5
C2—C3—C4115.1 (3)H14A—C14—H14C109.5
C13—C8—C9118.4 (4)H14B—C14—H14C109.5
C13—C8—C6121.6 (4)C6—C7—H7A109.5
C9—C8—C6119.9 (4)C6—C7—H7B109.5
C11—C10—C9120.1 (5)H7A—C7—H7B109.5
C11—C10—H10120C6—C7—H7C109.5
C9—C10—H10120H7A—C7—H7C109.5
S1—C15—H15A109.5H7B—C7—H7C109.5
S1—C15—H15B109.5
C5—N1—C1—O1−164.3 (4)O2—C3—C2—S15.4 (7)
C6—N1—C1—O1−7.7 (6)C4—C3—C2—S1−172.1 (3)
C5—N1—C1—C215.5 (5)O1—C1—C2—C3−169.5 (4)
C6—N1—C1—C2172.0 (3)N1—C1—C2—C310.7 (6)
C1—N1—C6—C7−90.2 (5)O1—C1—C2—S11.8 (5)
C5—N1—C6—C766.8 (5)N1—C1—C2—S1−178.0 (3)
C1—N1—C6—C8142.2 (4)C15—S1—C2—C346.9 (4)
C5—N1—C6—C8−60.8 (5)C14—S1—C2—C3−59.6 (4)
C5—C4—C3—O2151.0 (4)C15—S1—C2—C1−124.8 (3)
C5—C4—C3—C2−31.4 (6)C14—S1—C2—C1128.7 (3)
C10—C9—C8—C13−0.6 (6)C1—N1—C5—C4−48.4 (5)
C10—C9—C8—C6−177.2 (4)C6—N1—C5—C4154.7 (3)
N1—C6—C8—C13149.8 (4)C3—C4—C5—N154.5 (5)
C7—C6—C8—C1324.4 (6)C9—C8—C13—C12−0.3 (6)
N1—C6—C8—C9−33.6 (5)C6—C8—C13—C12176.3 (4)
C7—C6—C8—C9−159.1 (4)C8—C13—C12—C110.9 (7)
C8—C9—C10—C110.8 (6)C13—C12—C11—C10−0.7 (7)
O2—C3—C2—C1176.3 (4)C9—C10—C11—C12−0.2 (7)
C4—C3—C2—C1−1.2 (6)
D—H···AD—HH···AD···AD—H···A
C7—H7C···O2i0.962.363.315 (6)172
C15—H15A···O1ii0.962.383.167 (5)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7C⋯O2i0.962.363.315 (6)172
C15—H15A⋯O1ii0.962.383.167 (5)138

Symmetry codes: (i) ; (ii) .

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