Literature DB >> 21522866

Bis(2-{[2-(isopropyl-aza-nium-yl)eth-yl]imino-meth-yl}-6-meth-oxy-phenolato)copper(II) bis-(thio-cyanate).

Lin Yuan1.   

Abstract

The asymmetric unit of the title compound, [Cu(C(13)H(20)N(2)O(2))(2)](NCS)(2), contains one half-dication, located on an inversion center, and one thio-cyanate anion. Each Cu(II) atom is four-coordinated by two phenolate O and two imine N atoms from two symmetry-related Schiff base 2-{[2-(isopropyl-aza-nium-yl)eth-yl]imino-meth-yl}-6-meth-oxy-phenolate (L) ligands in a distorted square-planar geometry. The ammonium groups are involved in the formation of N-H⋯O and N-H⋯N hydrogen bonds, which link one dication and two anions into an electroneutral cluster. When very weak Cu-N interactions with a distance of 2.910 (5) Å between the metal and the thiocyanate anions in apical positions are considered, the secondary coordination polyhedron is a very elongated CuN(4)O(2) octahedron.

Entities:  

Year:  2011        PMID: 21522866      PMCID: PMC3051500          DOI: 10.1107/S1600536811001322

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to copper(II) complexes with Schiff base ligands, see: Fernandez et al. (2010 ▶); Biswas et al. (2010 ▶); Chakraborty et al. (2010 ▶). For related complexes, see: Ji & Lu (2010 ▶); Cai (2009 ▶); Xia et al. (2008 ▶); Suleiman Gwaram et al. (2010 ▶); Ma (2008 ▶).

Experimental

Crystal data

[Cu(C13H20N2O2)2](NCS)2 M = 652.32 Orthorhombic, a = 13.5307 (12) Å b = 9.7992 (9) Å c = 24.114 (2) Å V = 3197.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.86 mm−1 T = 298 K 0.20 × 0.18 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.848, T max = 0.882 13234 measured reflections 2406 independent reflections 1666 reflections with I > 2σ(I) R int = 0.063 θmax = 23.8°

Refinement

R[F 2 > 2σ(F 2)] = 0.078 wR(F 2) = 0.143 S = 1.15 2406 reflections 190 parameters 6 restraints H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001322/cv5037sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001322/cv5037Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C13H20N2O2)2](NCS)2Dx = 1.355 Mg m3
Mr = 652.32Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 1594 reflections
a = 13.5307 (12) Åθ = 2.3–24.5°
b = 9.7992 (9) ŵ = 0.86 mm1
c = 24.114 (2) ÅT = 298 K
V = 3197.3 (5) Å3Block, blue
Z = 40.20 × 0.18 × 0.15 mm
F(000) = 1372
Bruker SMART CCD area-detector diffractometer2406 independent reflections
Radiation source: fine-focus sealed tube1666 reflections with I > 2σ(I)
graphiteRint = 0.063
ω scansθmax = 23.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.848, Tmax = 0.882k = −11→8
13234 measured reflectionsl = −27→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.078Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.15w = 1/[σ2(Fo2) + 13.3941P] where P = (Fo2 + 2Fc2)/3
2406 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.38 e Å3
6 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.50001.00000.0565 (4)
N10.1018 (4)0.3629 (5)0.97413 (19)0.0449 (13)
N20.0401 (4)0.4022 (5)0.85934 (19)0.0496 (14)
H2A0.07580.47460.87060.059*
H2B−0.01870.40640.87670.059*
N30.0998 (7)0.6598 (8)0.9151 (4)0.112 (3)
O10.0858 (3)0.5576 (5)1.05728 (17)0.0600 (13)
O20.1714 (4)0.7103 (5)1.12935 (19)0.0683 (14)
S10.1299 (2)0.8802 (4)0.84850 (14)0.1397 (13)
C10.2387 (5)0.4671 (7)1.0238 (2)0.0493 (17)
C20.1830 (5)0.5544 (7)1.0579 (2)0.0484 (16)
C30.2338 (5)0.6371 (7)1.0960 (3)0.0539 (17)
C40.3351 (5)0.6389 (8)1.0981 (3)0.063 (2)
H40.36720.69781.12240.075*
C50.3903 (5)0.5527 (8)1.0640 (3)0.066 (2)
H50.45900.55371.06570.079*
C60.3431 (5)0.4669 (7)1.0282 (3)0.0589 (19)
H60.38000.40751.00630.071*
C70.1925 (5)0.3692 (7)0.9874 (2)0.0525 (17)
H70.23380.30340.97200.063*
C80.0748 (5)0.2484 (6)0.9380 (2)0.0536 (17)
H8A0.00560.22690.94360.064*
H8B0.11310.16900.94870.064*
C90.0919 (5)0.2770 (6)0.8775 (3)0.0560 (18)
H9A0.16220.28720.87080.067*
H9B0.06870.20020.85570.067*
C100.0230 (6)0.4153 (7)0.7987 (3)0.064 (2)
H10−0.01030.33240.78570.077*
C110.1193 (7)0.4276 (10)0.7687 (3)0.114 (4)
H11A0.15460.34290.77130.172*
H11B0.15790.49910.78510.172*
H11C0.10720.44870.73040.172*
C12−0.0447 (7)0.5355 (8)0.7880 (3)0.098 (3)
H12A−0.10330.52640.81010.147*
H12B−0.06240.53780.74950.147*
H12C−0.01120.61860.79770.147*
C130.2134 (6)0.8058 (8)1.1669 (3)0.084 (3)
H13A0.25980.76001.19060.127*
H13B0.16210.84591.18900.127*
H13C0.24680.87611.14640.127*
C140.1133 (7)0.7473 (10)0.8862 (4)0.097 (3)
U11U22U33U12U13U23
Cu10.0503 (6)0.0653 (7)0.0539 (6)0.0066 (7)−0.0009 (6)−0.0144 (7)
N10.047 (3)0.046 (3)0.041 (3)−0.004 (3)0.005 (3)0.002 (3)
N20.058 (3)0.050 (3)0.041 (3)0.013 (3)0.009 (3)−0.001 (3)
N30.137 (6)0.072 (5)0.127 (6)0.006 (5)−0.054 (5)0.004 (5)
O10.049 (3)0.080 (3)0.051 (3)0.004 (2)0.001 (2)−0.016 (2)
O20.069 (3)0.072 (3)0.064 (3)0.003 (3)−0.011 (3)−0.018 (3)
S10.120 (2)0.160 (3)0.139 (3)0.040 (2)0.023 (2)0.056 (2)
C10.050 (4)0.057 (4)0.041 (3)0.008 (3)0.005 (3)0.007 (3)
C20.050 (4)0.057 (4)0.039 (4)−0.001 (3)−0.004 (3)0.008 (3)
C30.065 (5)0.051 (4)0.047 (4)0.001 (4)0.001 (4)0.006 (3)
C40.066 (5)0.063 (5)0.060 (5)−0.017 (4)−0.014 (4)0.017 (4)
C50.050 (5)0.077 (5)0.071 (5)−0.006 (4)−0.004 (4)0.015 (4)
C60.054 (4)0.065 (5)0.058 (4)0.003 (4)0.009 (4)0.013 (4)
C70.066 (5)0.053 (4)0.039 (4)0.007 (4)0.015 (3)0.004 (3)
C80.066 (5)0.045 (4)0.050 (4)0.007 (4)0.005 (3)0.001 (3)
C90.073 (5)0.050 (4)0.046 (4)0.014 (4)−0.006 (4)−0.005 (3)
C100.092 (6)0.061 (5)0.040 (4)0.006 (4)0.001 (4)−0.001 (4)
C110.152 (9)0.138 (9)0.053 (5)0.033 (7)0.045 (6)0.019 (5)
C120.152 (9)0.084 (6)0.058 (5)0.033 (6)−0.032 (5)0.008 (4)
C130.109 (7)0.072 (5)0.071 (5)0.003 (5)−0.020 (5)−0.019 (4)
C140.102 (7)0.076 (6)0.114 (8)0.008 (6)−0.041 (7)−0.021 (6)
Cu1—O1i1.891 (4)C5—C61.364 (9)
Cu1—O11.891 (4)C5—H50.9300
Cu1—N1i2.023 (5)C6—H60.9300
Cu1—N12.023 (5)C7—H70.9300
N1—C71.271 (8)C8—C91.504 (8)
N1—C81.466 (7)C8—H8A0.9700
N2—C91.480 (7)C8—H8B0.9700
N2—C101.486 (7)C9—H9A0.9700
N2—H2A0.9001C9—H9B0.9700
N2—H2B0.9000C10—C111.496 (10)
N3—C141.120 (11)C10—C121.513 (9)
O1—C21.316 (7)C10—H100.9800
O2—C31.370 (7)C11—H11A0.9600
O2—C131.421 (8)C11—H11B0.9600
S1—C141.603 (11)C11—H11C0.9600
C1—C21.404 (8)C12—H12A0.9600
C1—C61.417 (9)C12—H12B0.9600
C1—C71.443 (9)C12—H12C0.9600
C2—C31.405 (9)C13—H13A0.9600
C3—C41.372 (9)C13—H13B0.9600
C4—C51.396 (10)C13—H13C0.9600
C4—H40.9300
O1i—Cu1—O1180N1—C8—C9113.3 (5)
O1i—Cu1—N1i90.3 (2)N1—C8—H8A108.9
O1—Cu1—N1i89.7 (2)C9—C8—H8A108.9
O1i—Cu1—N189.7 (2)N1—C8—H8B108.9
O1—Cu1—N190.3 (2)C9—C8—H8B108.9
N1i—Cu1—N1180.0 (3)H8A—C8—H8B107.7
C7—N1—C8115.3 (6)N2—C9—C8111.6 (5)
C7—N1—Cu1123.2 (5)N2—C9—H9A109.3
C8—N1—Cu1121.4 (4)C8—C9—H9A109.3
C9—N2—C10115.9 (5)N2—C9—H9B109.3
C9—N2—H2A108.1C8—C9—H9B109.3
C10—N2—H2A108.2H9A—C9—H9B108.0
C9—N2—H2B108.6N2—C10—C11110.3 (6)
C10—N2—H2B108.5N2—C10—C12109.2 (6)
H2A—N2—H2B107.4C11—C10—C12112.5 (7)
C2—O1—Cu1127.9 (4)N2—C10—H10108.3
C3—O2—C13118.2 (6)C11—C10—H10108.3
C2—C1—C6119.6 (6)C12—C10—H10108.3
C2—C1—C7121.9 (6)C10—C11—H11A109.5
C6—C1—C7118.4 (6)C10—C11—H11B109.5
O1—C2—C1123.0 (6)H11A—C11—H11B109.5
O1—C2—C3118.8 (6)C10—C11—H11C109.5
C1—C2—C3118.1 (6)H11A—C11—H11C109.5
O2—C3—C4126.0 (7)H11B—C11—H11C109.5
O2—C3—C2112.7 (6)C10—C12—H12A109.5
C4—C3—C2121.3 (7)C10—C12—H12B109.5
C3—C4—C5120.3 (7)H12A—C12—H12B109.5
C3—C4—H4119.8C10—C12—H12C109.5
C5—C4—H4119.8H12A—C12—H12C109.5
C6—C5—C4119.8 (7)H12B—C12—H12C109.5
C6—C5—H5120.1O2—C13—H13A109.5
C4—C5—H5120.1O2—C13—H13B109.5
C5—C6—C1120.8 (7)H13A—C13—H13B109.5
C5—C6—H6119.6O2—C13—H13C109.5
C1—C6—H6119.6H13A—C13—H13C109.5
N1—C7—C1127.2 (6)H13B—C13—H13C109.5
N1—C7—H7116.4N3—C14—S1175.6 (11)
C1—C7—H7116.4
D—H···AD—HH···AD···AD—H···A
N2—H2A···N30.902.132.972 (10)155
N2—H2B···O1i0.901.872.665 (6)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N30.902.132.972 (10)155
N2—H2B⋯O1i0.901.872.665 (6)147

Symmetry code: (i) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, crystal structure and magnetic properties of three unprecedented tri-nuclear and one very rare tetra-nuclear copper(II) Schiff-base complexes supported by mixed azido/phenoxo/nitrato or acetato bridges.

Authors:  Chaitali Biswas; Michael G B Drew; Eliseo Ruiz; Marta Estrader; Carmen Diaz; Ashutosh Ghosh
Journal:  Dalton Trans       Date:  2010-07-12       Impact factor: 4.390

3.  Evaluation of a Schiff base copper complex compound as potent anticancer molecule with multiple targets of action.

Authors:  Ajanta Chakraborty; Pramod Kumar; Kaushik Ghosh; Partha Roy
Journal:  Eur J Pharmacol       Date:  2010-08-24       Impact factor: 4.432

4.  Bis[4-bromo-2-(cyclo-pentyl-imino-meth-yl)phenolato]copper(II).

Authors:  Bang-Hong Cai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28

5.  {4-Bromo-2-[2-(methyl-amino-)ethyl-iminometh-yl]phenolato}thio-cyanato-copper(II).

Authors:  Jun-Ying Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

6.  [(1S,2S)-2-(1-{[2-(2-Oxidobenzyl-idene-amino)-cyclo-hex-yl]imino}-eth-yl)phenolato-κO,N,N',O']copper(II).

Authors:  Nura Suleiman Gwaram; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-18

7.  Bis{2-[(2-cyano-phen-yl)imino-meth-yl]phenolato}copper(II).

Authors:  Rong Xia; Hai-Jun Xu; Han Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

8.  Bis[2-(cyclo-pentyl-imino-meth-yl)-5-meth-oxy-phenolato]copper(II).

Authors:  Xiao-Hui Ji; Jiu-Fu Lu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-03
  8 in total

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