Literature DB >> 21522841

Diaqua-(6-bromo-picolinato-κN,O)(nitrato-κO,O)copper(II).

Joana A Silva, Ana Pereira Magalhães, Manuela Ramos Silva, Abílio J F N Sobral, Laura C J Pereira.   

Abstract

In the monomeric title complex, [Cu(C(6)H(3)BrNO(2))(NO(3))(H(2)O)(2)], the Cu(II) ion is coordinated by a bidentate 6-bromo-picolinate ion, one nitrate ion and two water mol-ecules in a geometry inter-mediate between five- and six-coordinate. Conventional O-H⋯O hydrogen bonds link the complex mol-ecules, forming layers parallel to the ab plane.

Entities:  

Year:  2011        PMID: 21522841      PMCID: PMC3051566          DOI: 10.1107/S160053681100064X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to copper complexes with low-dimensionality synthesized by our group, see: Martins, Ramos Silva et al. (2008 ▶), Martins, Silva et al. (2008 ▶); Ramos Silva et al. (2001a ▶,b ▶,c ▶, 2005a ▶,b ▶). For a magnetic low-dimensional system with picolinic acid, see: Eppley et al. (1997 ▶). For a similar compound with magnetic properties, see: Kukovec et al. (2008 ▶).

Experimental

Crystal data

[Cu(C6H3BrNO2)(NO3)(H2O)2] M = 362.59 Orthorhombic, a = 9.0791 (14) Å b = 14.035 (2) Å c = 17.165 (2) Å V = 2187.2 (6) Å3 Z = 8 Mo Kα radiation μ = 5.68 mm−1 T = 293 K 0.40 × 0.10 × 0.08 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.619, T max = 0.999 35919 measured reflections 3263 independent reflections 1849 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.137 S = 1.03 3263 reflections 167 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.06 e Å−3 Δρmin = −1.19 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100064X/bt5450sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100064X/bt5450Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C6H3BrNO2)(NO3)(H2O)2]F(000) = 1416
Mr = 362.59Dx = 2.202 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 6959 reflections
a = 9.0791 (14) Åθ = 2.9–26.3°
b = 14.035 (2) ŵ = 5.68 mm1
c = 17.165 (2) ÅT = 293 K
V = 2187.2 (6) Å3Needle, blue
Z = 80.40 × 0.10 × 0.08 mm
Bruker APEX CCD area-detector diffractometer3263 independent reflections
Radiation source: fine-focus sealed tube1849 reflections with I > 2σ(I)
graphiteRint = 0.069
φ and ω scansθmax = 31.4°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −12→11
Tmin = 0.619, Tmax = 0.999k = −19→20
35919 measured reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.137w = 1/[σ2(Fo2) + (0.0722P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3263 reflectionsΔρmax = 1.06 e Å3
167 parametersΔρmin = −1.19 e Å3
7 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0019 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.27639 (5)0.10769 (4)0.67505 (3)0.03377 (16)
Br1−0.01236 (4)0.12831 (4)0.52718 (3)0.04471 (16)
C10.5394 (5)0.1362 (3)0.6017 (2)0.0356 (10)
C20.4323 (4)0.1249 (2)0.5356 (2)0.0291 (8)
C30.4765 (5)0.1207 (4)0.4602 (3)0.0463 (12)
H30.57630.12140.44790.056*
C40.3723 (6)0.1155 (4)0.4020 (3)0.0542 (14)
H40.40040.11070.35000.065*
C50.2261 (5)0.1175 (4)0.4223 (3)0.0500 (13)
H50.15330.11640.38430.060*
C60.1890 (5)0.1212 (3)0.5006 (2)0.0367 (10)
O10.4821 (3)0.1405 (2)0.66941 (16)0.0406 (8)
O20.6707 (3)0.1410 (3)0.58800 (18)0.0529 (9)
O30.1019 (3)0.0189 (2)0.67729 (14)0.0378 (7)
O40.2795 (3)−0.0834 (3)0.66960 (18)0.0516 (9)
O50.0612 (4)−0.1309 (2)0.7005 (2)0.0572 (9)
O60.3112 (3)0.0737 (3)0.78475 (15)0.0505 (9)
H6A0.3992 (12)0.074 (3)0.8019 (8)0.076*
H6B0.264 (3)0.103 (2)0.8203 (5)0.076*
O70.1350 (4)0.2239 (2)0.70395 (19)0.0494 (8)
H7A0.156 (5)0.2826 (10)0.703 (3)0.074*
H7B0.086 (4)0.222 (4)0.7459 (14)0.074*
N10.2882 (4)0.1232 (2)0.55771 (19)0.0313 (8)
N20.1477 (4)−0.0683 (3)0.68317 (17)0.0356 (8)
U11U22U33U12U13U23
Cu10.0240 (3)0.0461 (4)0.0312 (2)0.0008 (2)0.00166 (17)0.0011 (2)
Br10.0287 (2)0.0573 (3)0.0481 (3)0.00161 (19)−0.00589 (16)0.0033 (2)
C10.030 (2)0.040 (3)0.037 (2)−0.0019 (18)−0.0022 (16)0.0035 (17)
C20.028 (2)0.022 (2)0.0374 (19)0.0017 (16)0.0021 (15)0.0012 (15)
C30.035 (3)0.063 (3)0.041 (2)−0.002 (2)0.0043 (17)−0.001 (2)
C40.049 (3)0.079 (4)0.035 (2)−0.004 (2)0.0032 (19)−0.007 (2)
C50.043 (3)0.070 (4)0.037 (2)−0.004 (2)−0.0053 (18)0.002 (2)
C60.032 (2)0.045 (3)0.0328 (19)0.0002 (17)−0.0041 (16)0.0018 (17)
O10.0272 (15)0.064 (2)0.0312 (14)−0.0077 (14)0.0003 (10)−0.0009 (13)
O20.0238 (16)0.091 (3)0.0443 (17)−0.0025 (15)0.0015 (12)0.0099 (16)
O30.0269 (14)0.0397 (19)0.0468 (15)0.0008 (12)−0.0003 (11)0.0047 (12)
O40.0397 (19)0.049 (2)0.066 (2)0.0137 (15)0.0097 (14)0.0014 (16)
O50.055 (2)0.052 (2)0.065 (2)−0.0217 (17)−0.0069 (17)0.0160 (16)
O60.0313 (16)0.087 (3)0.0326 (14)0.0088 (16)0.0015 (11)0.0027 (16)
O70.0525 (19)0.0418 (19)0.0541 (17)0.0043 (16)0.0184 (14)−0.0001 (16)
N10.0277 (17)0.032 (2)0.0340 (16)−0.0022 (14)0.0002 (13)0.0037 (13)
N20.037 (2)0.036 (2)0.0337 (16)0.0017 (17)−0.0030 (14)0.0025 (14)
Cu1—O11.926 (3)C4—C51.373 (7)
Cu1—O61.968 (3)C4—H40.9300
Cu1—O32.016 (3)C5—C61.386 (6)
Cu1—N12.029 (3)C5—H50.9300
Cu1—O72.134 (3)C6—N11.332 (5)
Br1—C61.886 (4)O3—N21.296 (4)
C1—O21.218 (5)O4—N21.238 (4)
C1—O11.274 (5)O5—N21.215 (5)
C1—C21.503 (6)O6—H6A0.851 (9)
C2—C31.356 (6)O6—H6B0.85 (2)
C2—N11.363 (5)O7—H7A0.845 (10)
C3—C41.378 (6)O7—H7B0.85 (3)
C3—H30.9300
O1—Cu1—O687.13 (12)C3—C4—H4120.7
O1—Cu1—O3155.59 (13)C4—C5—C6118.9 (4)
O6—Cu1—O387.61 (12)C4—C5—H5120.6
O1—Cu1—N182.72 (12)C6—C5—H5120.6
O6—Cu1—N1165.35 (13)N1—C6—C5123.3 (4)
O3—Cu1—N197.29 (11)N1—C6—Br1118.4 (3)
O1—Cu1—O7114.35 (14)C5—C6—Br1118.2 (3)
O6—Cu1—O793.40 (13)C1—O1—Cu1115.5 (3)
O3—Cu1—O789.74 (13)N2—O3—Cu1109.4 (2)
N1—Cu1—O7100.38 (13)Cu1—O6—H6A118.7 (11)
O2—C1—O1125.0 (4)Cu1—O6—H6B118.9 (11)
O2—C1—C2119.6 (4)H6A—O6—H6B103.2 (14)
O1—C1—C2115.5 (4)Cu1—O7—H7A127 (3)
C3—C2—N1123.3 (4)Cu1—O7—H7B119 (3)
C3—C2—C1122.3 (4)H7A—O7—H7B99 (4)
N1—C2—C1114.3 (3)C6—N1—C2116.4 (3)
C2—C3—C4119.4 (4)C6—N1—Cu1133.9 (3)
C2—C3—H3120.3C2—N1—Cu1109.2 (2)
C4—C3—H3120.3O5—N2—O4123.1 (4)
C5—C4—C3118.6 (4)O5—N2—O3119.7 (4)
C5—C4—H4120.7O4—N2—O3117.2 (3)
O2—C1—C2—C3−0.6 (6)O7—Cu1—O3—N2−162.2 (2)
O1—C1—C2—C3179.0 (4)C5—C6—N1—C22.3 (6)
O2—C1—C2—N1−178.1 (4)Br1—C6—N1—C2−175.4 (3)
O1—C1—C2—N11.5 (5)C5—C6—N1—Cu1−168.5 (3)
N1—C2—C3—C40.7 (7)Br1—C6—N1—Cu113.8 (5)
C1—C2—C3—C4−176.6 (4)C3—C2—N1—C6−2.8 (6)
C2—C3—C4—C51.9 (7)C1—C2—N1—C6174.7 (3)
C3—C4—C5—C6−2.3 (7)C3—C2—N1—Cu1170.2 (3)
C4—C5—C6—N10.2 (7)C1—C2—N1—Cu1−12.3 (4)
C4—C5—C6—Br1177.9 (4)O1—Cu1—N1—C6−174.5 (4)
O2—C1—O1—Cu1−169.1 (4)O6—Cu1—N1—C6139.0 (5)
C2—C1—O1—Cu111.3 (5)O3—Cu1—N1—C630.1 (4)
O6—Cu1—O1—C1155.0 (3)O7—Cu1—N1—C6−60.9 (4)
O3—Cu1—O1—C177.1 (4)O1—Cu1—N1—C214.3 (2)
N1—Cu1—O1—C1−14.5 (3)O6—Cu1—N1—C2−32.2 (6)
O7—Cu1—O1—C1−112.6 (3)O3—Cu1—N1—C2−141.1 (2)
O1—Cu1—O3—N28.9 (4)O7—Cu1—N1—C2127.8 (2)
O6—Cu1—O3—N2−68.8 (2)Cu1—O3—N2—O5165.8 (3)
N1—Cu1—O3—N297.3 (2)Cu1—O3—N2—O4−15.0 (4)
D—H···AD—HH···AD···AD—H···A
O6—H6A···O3i0.85 (1)2.03 (2)2.825 (4)156 (4)
O6—H6B···O2ii0.85 (2)1.86 (1)2.700 (4)166 (2)
O7—H7A···O4iii0.85 (1)2.06 (2)2.874 (5)163 (5)
O7—H7B···O1ii0.85 (3)2.08 (3)2.833 (4)148 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6A⋯O3i0.85 (1)2.03 (2)2.825 (4)156 (4)
O6—H6B⋯O2ii0.85 (2)1.86 (1)2.700 (4)166 (2)
O7—H7A⋯O4iii0.85 (1)2.06 (2)2.874 (5)163 (5)
O7—H7B⋯O1ii0.85 (3)2.08 (3)2.833 (4)148 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Di-mu-chloro-1:2kappa2Cl;3:4kappa2Cl-hexachloro-1kappa3Cl,4kappa3Cl-tetra-mu-dimethylglycine-2:3kappa8O:O'-tetracopper(II).

Authors:  M Ramos Silva; A Matos Beja; J A Paixão; J Martin-Gil
Journal:  Acta Crystallogr C       Date:  2005-07-23       Impact factor: 1.172

3.  Weak antiferromagnetic interactions in hydronium diaqua-1kappaO,2kappaO-trichloro-1kappaCl,2kappa2Cl-mu-dimethylglycinato-1kappaO:2kappa2O',N-dimethylglycinato-1kappa2N,O-dicuprate(II).

Authors:  M Ramos Silva; A Matos Beja; J A Paixão; J Martin-Gil
Journal:  Acta Crystallogr C       Date:  2005-11-11       Impact factor: 1.172

4.  Dichlorobis(glycocyamine-O)copper(II).

Authors:  M Ramos Silva ; J A Paixão ; A Matos Beja ; L Alte Da Veiga
Journal:  Acta Crystallogr C       Date:  2001-01       Impact factor: 1.172

5.  Conformational flexibility of tricine as a chelating agent in catena-poly-[[(tricinato)copper(II)]-mu-chloro].

Authors:  M Ramos Silva ; J A Paixão ; A Matos Beja ; L Alte da Veiga
Journal:  Acta Crystallogr C       Date:  2001-01       Impact factor: 1.172

6.  (Benzoato-κO,O')(quinoline-2-carboxyl-ato-κN,O)(quinoline-2-carboxylic acid-κN,O)copper(II).

Authors:  Nuno D Martins; Manuela Ramos Silva; Joana A Silva; Ana Matos Beja; Abilio J F N Sobral
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-21

7.  Bis[(2-quinol-yl)methane-diol-κN,O](sulfato-κO)copper(II) dihydrate.

Authors:  Nuno D Martins; Joana A Silva; Manuela Ramos Silva; Ana Matos Beja; Abilio J F N Sobral
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23
  7 in total

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