Literature DB >> 21522683

(Z)-2-[2-(4-Methyl-benzyl-idene)hydrazin-yl]pyridine.

Haldorai Yuvaraj, S Sundaramoorthy, D Velmurugan, Rajesh G Kalkhambkar.   

Abstract

Mol-ecules of the title compound, C(13)H(13)N(3), are essentially planar (r.m.s. deviation for all non-H atoms = 0.054 Å). The dihedral angle between the two aromatic rings is 6.33 (5)°. In the crystal, pairs of centrosymmetrically related mol-ecules are linked through N-H⋯N hydrogen bonds, forming N-H⋯N dimers with graph-set motif R(2) (2)(8).

Entities:  

Year:  2010        PMID: 21522683      PMCID: PMC3050141          DOI: 10.1107/S1600536810052372

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of hydrazone derivatives, see: Savini et al. (2002 ▶); Silva et al. (2004 ▶). For a related structure, see: Yuvaraj et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H13N3 M = 211.26 Monoclinic, a = 5.2385 (8) Å b = 10.7215 (17) Å c = 20.590 (3) Å β = 92.699 (5)° V = 1155.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.26 × 0.23 × 0.21 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.981, T max = 0.984 10622 measured reflections 2850 independent reflections 1341 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.154 S = 1.00 2850 reflections 147 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.11 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052372/bt5435sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052372/bt5435Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13N3F(000) = 448
Mr = 211.26Dx = 1.215 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 715 reflections
a = 5.2385 (8) Åθ = 2.0–28.4°
b = 10.7215 (17) ŵ = 0.08 mm1
c = 20.590 (3) ÅT = 293 K
β = 92.699 (5)°Block, colourless
V = 1155.2 (3) Å30.26 × 0.23 × 0.21 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2850 independent reflections
Radiation source: fine-focus sealed tube1341 reflections with I > 2σ(I)
graphiteRint = 0.027
ω and φ scansθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −6→6
Tmin = 0.981, Tmax = 0.984k = −12→14
10622 measured reflectionsl = −27→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.154w = 1/[σ2(Fo2) + (0.0649P)2 + 0.0987P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2850 reflectionsΔρmax = 0.14 e Å3
147 parametersΔρmin = −0.11 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.011 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.2431 (4)0.01692 (17)0.21369 (9)0.0756 (5)
H1−0.27500.08660.18770.091*
C2−0.3858 (4)−0.00253 (17)0.26709 (9)0.0797 (5)
H2−0.51190.05480.27660.096*
C3−0.3465 (3)−0.10558 (17)0.30708 (8)0.0712 (5)
C4−0.1622 (4)−0.18826 (18)0.29040 (9)0.0852 (6)
H4−0.1341−0.25940.31560.102*
C5−0.0171 (4)−0.16896 (18)0.23728 (9)0.0874 (6)
H50.1077−0.22690.22760.105*
C6−0.0525 (3)−0.06569 (15)0.19808 (8)0.0674 (5)
C7−0.5002 (4)−0.1260 (2)0.36606 (9)0.0936 (6)
H7A−0.4823−0.21100.38010.140*
H7B−0.6770−0.10860.35530.140*
H7C−0.4395−0.07140.40030.140*
C80.1072 (3)−0.04777 (17)0.14289 (8)0.0731 (5)
H80.2328−0.10630.13470.088*
C90.1978 (3)0.15130 (15)0.01140 (8)0.0662 (5)
C10−0.0022 (4)0.23520 (18)0.01634 (9)0.0813 (5)
H10−0.11540.22810.04960.098*
C11−0.0290 (4)0.32800 (19)−0.02841 (10)0.0907 (6)
H11−0.16070.3857−0.02580.109*
C120.1387 (4)0.33637 (19)−0.07751 (11)0.0951 (6)
H120.12310.3990−0.10870.114*
C130.3290 (4)0.2497 (2)−0.07891 (10)0.0895 (6)
H130.44300.2554−0.11210.107*
N10.0784 (3)0.04629 (14)0.10557 (6)0.0720 (4)
N20.2388 (3)0.05650 (13)0.05528 (6)0.0749 (4)
H2A0.36230.00460.05130.090*
N30.3633 (3)0.15655 (13)−0.03568 (7)0.0742 (4)
U11U22U33U12U13U23
C10.0777 (12)0.0642 (10)0.0860 (12)0.0007 (9)0.0162 (9)0.0076 (9)
C20.0744 (12)0.0739 (12)0.0927 (12)0.0054 (10)0.0244 (10)0.0042 (10)
C30.0665 (11)0.0751 (11)0.0727 (10)−0.0031 (9)0.0112 (8)0.0009 (9)
C40.0932 (14)0.0836 (13)0.0798 (12)0.0151 (11)0.0158 (10)0.0178 (10)
C50.0928 (14)0.0874 (13)0.0837 (12)0.0246 (11)0.0219 (11)0.0115 (10)
C60.0682 (11)0.0661 (10)0.0687 (10)−0.0004 (9)0.0094 (8)−0.0022 (8)
C70.0926 (14)0.1023 (15)0.0878 (13)0.0005 (12)0.0244 (11)0.0100 (11)
C80.0754 (12)0.0720 (11)0.0729 (10)0.0023 (9)0.0137 (9)−0.0022 (9)
C90.0638 (11)0.0657 (11)0.0693 (10)−0.0110 (9)0.0067 (8)−0.0058 (8)
C100.0767 (12)0.0795 (12)0.0884 (12)0.0016 (11)0.0117 (10)−0.0051 (11)
C110.0797 (14)0.0773 (13)0.1152 (16)0.0026 (10)0.0057 (12)0.0009 (12)
C120.0857 (15)0.0804 (13)0.1190 (16)−0.0064 (12)0.0035 (13)0.0221 (12)
C130.0778 (13)0.0941 (14)0.0976 (14)−0.0129 (12)0.0151 (10)0.0157 (12)
N10.0709 (9)0.0764 (10)0.0699 (8)−0.0061 (7)0.0162 (7)−0.0064 (8)
N20.0737 (10)0.0783 (10)0.0741 (9)0.0027 (8)0.0191 (7)0.0002 (8)
N30.0671 (9)0.0762 (10)0.0801 (9)−0.0092 (7)0.0115 (8)0.0036 (8)
C1—C21.374 (2)C8—N11.273 (2)
C1—C61.383 (2)C8—H80.9300
C1—H10.9300C9—N31.332 (2)
C2—C31.387 (2)C9—N21.370 (2)
C2—H20.9300C9—C101.388 (2)
C3—C41.366 (2)C10—C111.359 (2)
C3—C71.504 (2)C10—H100.9300
C4—C51.377 (3)C11—C121.373 (3)
C4—H40.9300C11—H110.9300
C5—C61.378 (2)C12—C131.364 (3)
C5—H50.9300C12—H120.9300
C6—C81.455 (2)C13—N31.344 (2)
C7—H7A0.9600C13—H130.9300
C7—H7B0.9600N1—N21.3680 (17)
C7—H7C0.9600N2—H2A0.8600
C2—C1—C6120.95 (17)N1—C8—C6121.34 (17)
C2—C1—H1119.5N1—C8—H8119.3
C6—C1—H1119.5C6—C8—H8119.3
C1—C2—C3121.63 (17)N3—C9—N2115.09 (16)
C1—C2—H2119.2N3—C9—C10123.05 (17)
C3—C2—H2119.2N2—C9—C10121.86 (17)
C4—C3—C2117.02 (16)C11—C10—C9118.63 (18)
C4—C3—C7121.33 (17)C11—C10—H10120.7
C2—C3—C7121.65 (17)C9—C10—H10120.7
C3—C4—C5121.69 (18)C10—C11—C12119.8 (2)
C3—C4—H4119.2C10—C11—H11120.1
C5—C4—H4119.2C12—C11—H11120.1
C4—C5—C6121.46 (18)C13—C12—C11117.68 (19)
C4—C5—H5119.3C13—C12—H12121.2
C6—C5—H5119.3C11—C12—H12121.2
C5—C6—C1117.22 (16)N3—C13—C12124.55 (19)
C5—C6—C8119.79 (16)N3—C13—H13117.7
C1—C6—C8122.99 (16)C12—C13—H13117.7
C3—C7—H7A109.5C8—N1—N2117.46 (15)
C3—C7—H7B109.5N1—N2—C9118.41 (15)
H7A—C7—H7B109.5N1—N2—H2A120.8
C3—C7—H7C109.5C9—N2—H2A120.8
H7A—C7—H7C109.5C9—N3—C13116.24 (17)
H7B—C7—H7C109.5
C6—C1—C2—C3−0.5 (3)N3—C9—C10—C11−0.8 (3)
C1—C2—C3—C4−1.1 (3)N2—C9—C10—C11179.07 (15)
C1—C2—C3—C7179.13 (16)C9—C10—C11—C120.6 (3)
C2—C3—C4—C51.6 (3)C10—C11—C12—C13−0.3 (3)
C7—C3—C4—C5−178.62 (18)C11—C12—C13—N30.2 (3)
C3—C4—C5—C6−0.6 (3)C6—C8—N1—N2179.29 (13)
C4—C5—C6—C1−1.0 (3)C8—N1—N2—C9174.71 (14)
C4—C5—C6—C8179.16 (17)N3—C9—N2—N1179.08 (13)
C2—C1—C6—C51.5 (3)C10—C9—N2—N1−0.8 (2)
C2—C1—C6—C8−178.67 (16)N2—C9—N3—C13−179.22 (14)
C5—C6—C8—N1179.65 (16)C10—C9—N3—C130.7 (2)
C1—C6—C8—N1−0.2 (3)C12—C13—N3—C9−0.3 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N3i0.862.283.131 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N3i0.862.283.131 (2)170

Symmetry code: (i) .

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