Literature DB >> 21522663

5-Pentyl-1H-tetra-zole.

Thorsten Rieth1, Dieter Schollmeyer, Heiner Detert.   

Abstract

The title compound C(6)H(12)N(4), is one of a few known tetra-zoles with an alkyl chain in the 5-position. The asymmetric unit contains two independent mol-ecules. The mol-ecules are linked by N-H⋯N inter-actions into chains with graph-set notation D(2) and C(2) (2)(8) along [010]. The two independent mol-ecules form a layered structure, the layers being composed of inter-digitating strands of alternatingly oriented and nearly identical mol-ecules.

Entities:  

Year:  2010        PMID: 21522663      PMCID: PMC3050224          DOI: 10.1107/S1600536810052244

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthetic methods see: Mihina & Herbst (1950 ▶); Steven et al. (1993 ▶); Detert & Schollmeyer (1999 ▶); Sugiono & Detert (2001 ▶); Glang et al. (2008 ▶); Borchmann et al. (2010 ▶). For the properties of tetra­zole, see: Huisgen et al. (1960a ▶,b ▶, 1961 ▶); Singh (1980 ▶); Pernice et al. (1988 ▶); Huff et al. (1996 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C6H12N4 M = 140.20 Triclinic, a = 8.7812 (14) Å b = 9.6770 (12) Å c = 11.614 (2) Å α = 93.136 (10)° β = 112.059 (9)° γ = 116.389 (7)° V = 789.6 (2) Å3 Z = 4 Cu Kα radiation μ = 0.63 mm−1 T = 193 K 0.50 × 0.40 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 3182 measured reflections 2991 independent reflections 2764 reflections with I > 2σ(I) R int = 0.070 3 standard reflections every 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.109 S = 1.04 2991 reflections 184 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052244/bx2337sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052244/bx2337Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H12N4Z = 4
Mr = 140.20F(000) = 304
Triclinic, P1Dx = 1.179 Mg m3
Hall symbol: -P 1Melting point: 315 K
a = 8.7812 (14) ÅCu Kα radiation, λ = 1.54178 Å
b = 9.6770 (12) ÅCell parameters from 25 reflections
c = 11.614 (2) Åθ = 65–69°
α = 93.136 (10)°µ = 0.63 mm1
β = 112.059 (9)°T = 193 K
γ = 116.389 (7)°Block, colourless
V = 789.6 (2) Å30.50 × 0.40 × 0.30 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.070
Radiation source: rotating anodeθmax = 70.0°, θmin = 4.3°
graphiteh = −10→9
ω/2θ scansk = 0→11
3182 measured reflectionsl = −14→14
2991 independent reflections3 standard reflections every 60 min
2764 reflections with I > 2σ(I) intensity decay: 2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0611P)2 + 0.1618P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2991 reflectionsΔρmax = 0.24 e Å3
184 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0088 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1A0.76292 (14)0.44445 (11)0.33040 (10)0.0321 (2)
H1A0.76280.54320.33970.038*
N2A0.77322 (17)0.38035 (13)0.22933 (10)0.0392 (3)
N3A0.77338 (17)0.25012 (13)0.24908 (11)0.0413 (3)
N4A0.76329 (16)0.22891 (12)0.36157 (10)0.0358 (3)
C5A0.75588 (16)0.35102 (13)0.41070 (11)0.0286 (3)
C6A0.74035 (18)0.38071 (13)0.53191 (11)0.0321 (3)
H6A0.61950.37970.51050.039*
H6B0.84580.48840.58750.039*
C7A0.74667 (18)0.25697 (14)0.60683 (12)0.0336 (3)
H7A0.63590.15010.55400.040*
H7B0.86330.25250.62330.040*
C8A0.74449 (18)0.29643 (15)0.73469 (12)0.0360 (3)
H8A0.63510.31230.71860.043*
H8B0.86190.39830.79050.043*
C9A0.7308 (2)0.16675 (18)0.80548 (14)0.0441 (3)
H9A0.61160.06550.75070.053*
H9B0.83830.14890.81970.053*
C10A0.7338 (3)0.2091 (2)0.93461 (16)0.0607 (4)
H10A0.71830.11980.97400.091*
H10B0.62980.22990.92150.091*
H10C0.85550.30500.99160.091*
N1B0.77122 (14)0.95284 (11)0.40731 (9)0.0305 (2)
H1B0.76391.04690.39950.037*
N2B0.74619 (15)0.88499 (12)0.50153 (10)0.0350 (3)
N3B0.74529 (16)0.75189 (12)0.47932 (10)0.0364 (3)
N4B0.76875 (15)0.73261 (12)0.37130 (10)0.0336 (2)
C5B0.78464 (16)0.85919 (13)0.32751 (11)0.0288 (3)
C6B0.81748 (19)0.89627 (13)0.21354 (12)0.0359 (3)
H6C0.95580.96400.24230.043*
H6D0.75690.95900.17660.043*
C7B0.74053 (18)0.74860 (13)0.10847 (11)0.0326 (3)
H7C0.80510.68800.14360.039*
H7D0.60300.67840.08130.039*
C8B0.77032 (18)0.79245 (14)−0.00809 (11)0.0341 (3)
H8C0.70020.8484−0.04530.041*
H8D0.90710.86780.02050.041*
C9B0.70495 (19)0.64908 (15)−0.11205 (12)0.0380 (3)
H9C0.56800.5737−0.14110.046*
H9D0.77490.5930−0.07510.046*
C10B0.7361 (2)0.69521 (18)−0.22777 (13)0.0501 (4)
H10D0.67360.5983−0.29740.075*
H10E0.87270.7536−0.20300.075*
H10F0.68220.7635−0.25750.075*
U11U22U33U12U13U23
N1A0.0489 (6)0.0245 (5)0.0357 (5)0.0239 (4)0.0240 (5)0.0118 (4)
N2A0.0627 (7)0.0336 (6)0.0384 (6)0.0314 (5)0.0295 (5)0.0145 (4)
N3A0.0686 (7)0.0333 (6)0.0397 (6)0.0336 (5)0.0308 (6)0.0135 (5)
N4A0.0564 (6)0.0268 (5)0.0379 (6)0.0269 (5)0.0264 (5)0.0118 (4)
C5A0.0357 (6)0.0209 (5)0.0337 (6)0.0163 (5)0.0171 (5)0.0077 (4)
C6A0.0446 (6)0.0263 (6)0.0350 (6)0.0218 (5)0.0219 (5)0.0094 (5)
C7A0.0440 (7)0.0288 (6)0.0360 (6)0.0214 (5)0.0214 (5)0.0112 (5)
C8A0.0426 (7)0.0348 (6)0.0348 (6)0.0211 (5)0.0193 (5)0.0100 (5)
C9A0.0566 (8)0.0519 (8)0.0428 (7)0.0358 (7)0.0283 (6)0.0228 (6)
C10A0.0868 (12)0.0807 (12)0.0495 (9)0.0573 (10)0.0426 (9)0.0353 (8)
N1B0.0454 (6)0.0229 (5)0.0326 (5)0.0217 (4)0.0203 (4)0.0098 (4)
N2B0.0511 (6)0.0294 (5)0.0353 (5)0.0242 (5)0.0242 (5)0.0116 (4)
N3B0.0544 (6)0.0303 (5)0.0370 (5)0.0255 (5)0.0263 (5)0.0151 (4)
N4B0.0520 (6)0.0262 (5)0.0362 (5)0.0250 (5)0.0256 (5)0.0133 (4)
C5B0.0386 (6)0.0206 (5)0.0312 (6)0.0168 (5)0.0169 (5)0.0074 (4)
C6B0.0554 (7)0.0235 (6)0.0359 (6)0.0205 (5)0.0260 (6)0.0118 (5)
C7B0.0440 (7)0.0240 (6)0.0350 (6)0.0174 (5)0.0220 (5)0.0094 (5)
C8B0.0457 (7)0.0276 (6)0.0339 (6)0.0194 (5)0.0206 (5)0.0117 (5)
C9B0.0507 (7)0.0322 (6)0.0347 (6)0.0208 (6)0.0224 (6)0.0097 (5)
C10B0.0734 (10)0.0466 (8)0.0388 (7)0.0305 (7)0.0324 (7)0.0150 (6)
N1A—C5A1.3330 (15)N1B—C5B1.3339 (15)
N1A—N2A1.3494 (14)N1B—N2B1.3446 (14)
N1A—H1A0.9564N1B—H1B0.9474
N2A—N3A1.2937 (14)N2B—N3B1.2956 (14)
N3A—N4A1.3628 (15)N3B—N4B1.3616 (14)
N4A—C5A1.3223 (14)N4B—C5B1.3222 (14)
C5A—C6A1.4892 (16)C5B—C6B1.4868 (16)
C6A—C7A1.5267 (16)C6B—C7B1.5228 (16)
C6A—H6A0.9900C6B—H6C0.9900
C6A—H6B0.9900C6B—H6D0.9900
C7A—C8A1.5222 (16)C7B—C8B1.5203 (16)
C7A—H7A0.9900C7B—H7C0.9900
C7A—H7B0.9900C7B—H7D0.9900
C8A—C9A1.5226 (18)C8B—C9B1.5167 (17)
C8A—H8A0.9900C8B—H8C0.9900
C8A—H8B0.9900C8B—H8D0.9900
C9A—C10A1.520 (2)C9B—C10B1.5212 (17)
C9A—H9A0.9900C9B—H9C0.9900
C9A—H9B0.9900C9B—H9D0.9900
C10A—H10A0.9800C10B—H10D0.9800
C10A—H10B0.9800C10B—H10E0.9800
C10A—H10C0.9800C10B—H10F0.9800
C5A—N1A—N2A109.67 (9)C5B—N1B—N2B109.65 (9)
C5A—N1A—H1A127.6C5B—N1B—H1B129.2
N2A—N1A—H1A122.7N2B—N1B—H1B120.8
N3A—N2A—N1A106.07 (10)N3B—N2B—N1B106.22 (9)
N2A—N3A—N4A110.18 (10)N2B—N3B—N4B110.06 (9)
C5A—N4A—N3A106.84 (9)C5B—N4B—N3B106.84 (9)
N4A—C5A—N1A107.23 (10)N4B—C5B—N1B107.23 (10)
N4A—C5A—C6A127.37 (10)N4B—C5B—C6B127.50 (10)
N1A—C5A—C6A125.40 (10)N1B—C5B—C6B125.25 (10)
C5A—C6A—C7A112.98 (9)C5B—C6B—C7B113.84 (9)
C5A—C6A—H6A109.0C5B—C6B—H6C108.8
C7A—C6A—H6A109.0C7B—C6B—H6C108.8
C5A—C6A—H6B109.0C5B—C6B—H6D108.8
C7A—C6A—H6B109.0C7B—C6B—H6D108.8
H6A—C6A—H6B107.8H6C—C6B—H6D107.7
C8A—C7A—C6A111.95 (10)C8B—C7B—C6B111.84 (10)
C8A—C7A—H7A109.2C8B—C7B—H7C109.2
C6A—C7A—H7A109.2C6B—C7B—H7C109.2
C8A—C7A—H7B109.2C8B—C7B—H7D109.2
C6A—C7A—H7B109.2C6B—C7B—H7D109.2
H7A—C7A—H7B107.9H7C—C7B—H7D107.9
C7A—C8A—C9A113.17 (11)C9B—C8B—C7B113.44 (10)
C7A—C8A—H8A108.9C9B—C8B—H8C108.9
C9A—C8A—H8A108.9C7B—C8B—H8C108.9
C7A—C8A—H8B108.9C9B—C8B—H8D108.9
C9A—C8A—H8B108.9C7B—C8B—H8D108.9
H8A—C8A—H8B107.8H8C—C8B—H8D107.7
C10A—C9A—C8A112.79 (12)C8B—C9B—C10B112.71 (11)
C10A—C9A—H9A109.0C8B—C9B—H9C109.0
C8A—C9A—H9A109.0C10B—C9B—H9C109.0
C10A—C9A—H9B109.0C8B—C9B—H9D109.0
C8A—C9A—H9B109.0C10B—C9B—H9D109.0
H9A—C9A—H9B107.8H9C—C9B—H9D107.8
C9A—C10A—H10A109.5C9B—C10B—H10D109.5
C9A—C10A—H10B109.5C9B—C10B—H10E109.5
H10A—C10A—H10B109.5H10D—C10B—H10E109.5
C9A—C10A—H10C109.5C9B—C10B—H10F109.5
H10A—C10A—H10C109.5H10D—C10B—H10F109.5
H10B—C10A—H10C109.5H10E—C10B—H10F109.5
C5A—N1A—N2A—N3A−0.33 (14)C5B—N1B—N2B—N3B0.27 (13)
N1A—N2A—N3A—N4A0.02 (14)N1B—N2B—N3B—N4B−0.24 (13)
N2A—N3A—N4A—C5A0.30 (15)N2B—N3B—N4B—C5B0.13 (14)
N3A—N4A—C5A—N1A−0.49 (13)N3B—N4B—C5B—N1B0.04 (13)
N3A—N4A—C5A—C6A178.87 (11)N3B—N4B—C5B—C6B178.27 (11)
N2A—N1A—C5A—N4A0.52 (14)N2B—N1B—C5B—N4B−0.19 (13)
N2A—N1A—C5A—C6A−178.86 (11)N2B—N1B—C5B—C6B−178.47 (11)
N4A—C5A—C6A—C7A3.98 (18)N4B—C5B—C6B—C7B28.32 (18)
N1A—C5A—C6A—C7A−176.77 (11)N1B—C5B—C6B—C7B−153.76 (12)
C5A—C6A—C7A—C8A176.01 (10)C5B—C6B—C7B—C8B177.66 (10)
C6A—C7A—C8A—C9A174.26 (11)C6B—C7B—C8B—C9B176.94 (11)
C7A—C8A—C9A—C10A178.51 (12)C7B—C8B—C9B—C10B−179.91 (11)
D—H···AD—HH···AD···AD—H···A
N1A—H1A···N4B0.961.822.7773 (14)175
N1B—H1B···N4Ai0.951.842.7779 (14)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H1A⋯N4B0.961.822.7773 (14)175
N1B—H1B⋯N4Ai0.951.842.7779 (14)170

Symmetry code: (i) .

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