Literature DB >> 21522638

Ethyl 1-(2,6-difluoro-benz-yl)-1H-1,2,3-triazole-4-carboxyl-ate.

Jing Jia1, Dingqiang Lu.   

Abstract

In the title compound, C(12)H(11)F(2)N(3)O(2), the dihedral angle between the triazole and phenyl rings is 73.74 (9)°. In the crystal, mol-ecules are linked into chains along [010] via weak C-H⋯O and C-H⋯N hydrogen bonds.

Entities:  

Year:  2010        PMID: 21522638      PMCID: PMC3050293          DOI: 10.1107/S1600536810050014

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an inter­mediate in the synthesis of rufinamide, a new anti-epilepsy drug (Herranz, 2008 ▶). For synthetic procedures, see: Abu-Orabi et al. (1989 ▶); Wang & Xie (2004 ▶). For a related structure, see: Xiao et al. (2008 ▶).

Experimental

Crystal data

C12H11F2N3O2 M = 267.24 Monoclinic, a = 9.4540 (19) Å b = 10.963 (2) Å c = 12.167 (2) Å β = 93.21 (3)° V = 1259.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.965, T max = 0.977 3270 measured reflections 2316 independent reflections 1629 reflections with I > 2σ(I) R int = 0.026 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.163 S = 1.03 2316 reflections 174 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810050014/pv2364sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050014/pv2364Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11F2N3O2F(000) = 552
Mr = 267.24Dx = 1.410 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 9.4540 (19) Åθ = 9–13°
b = 10.963 (2) ŵ = 0.12 mm1
c = 12.167 (2) ÅT = 293 K
β = 93.21 (3)°Block, colorless
V = 1259.1 (4) Å30.30 × 0.20 × 0.20 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1629 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
graphiteθmax = 25.4°, θmin = 2.2°
ω/2θ scansh = 0→11
Absorption correction: ψ scan (North et al., 1968)k = −3→13
Tmin = 0.965, Tmax = 0.977l = −14→14
3270 measured reflections3 standard reflections every 200 reflections
2316 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.163w = 1/[σ2(Fo2) + (0.0873P)2 + 0.337P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2316 reflectionsΔρmax = 0.32 e Å3
174 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.029 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.94152 (18)0.27880 (14)0.02828 (16)0.0890 (6)
F20.78127 (17)0.61613 (15)0.22000 (14)0.0829 (6)
O10.4165 (2)0.20776 (17)0.46337 (16)0.0744 (6)
O20.3594 (2)0.39959 (17)0.41799 (17)0.0776 (6)
N10.62925 (19)0.35347 (16)0.16945 (17)0.0537 (5)
N20.6558 (3)0.2343 (2)0.1898 (2)0.0751 (7)
N30.5829 (2)0.20178 (19)0.2728 (2)0.0709 (7)
C10.9678 (3)0.3771 (2)0.0933 (2)0.0618 (7)
C21.1060 (3)0.4031 (3)0.1262 (3)0.0733 (8)
H21.17960.35380.10490.088*
C31.1325 (3)0.5034 (3)0.1910 (3)0.0751 (8)
H31.22520.52200.21460.090*
C41.0243 (3)0.5767 (3)0.2217 (2)0.0687 (7)
H41.04260.64590.26440.082*
C50.8887 (3)0.5456 (2)0.1878 (2)0.0583 (6)
C60.8534 (2)0.4459 (2)0.12140 (19)0.0522 (6)
C70.7032 (3)0.4176 (2)0.0843 (2)0.0593 (7)
H7B0.65380.49300.06580.071*
H7A0.70230.36760.01850.071*
C80.5379 (2)0.3966 (2)0.2397 (2)0.0524 (6)
H80.50150.47530.24280.063*
C90.5093 (2)0.3001 (2)0.3059 (2)0.0538 (6)
C100.4248 (3)0.2941 (2)0.4032 (2)0.0577 (6)
C110.2781 (4)0.4100 (3)0.5169 (3)0.1053 (13)
H11A0.20560.34730.51620.126*
H11B0.34040.39880.58220.126*
C120.2137 (4)0.5286 (3)0.5186 (3)0.0955 (11)
H12A0.14820.53730.45590.143*
H12C0.28570.59010.51630.143*
H12B0.16410.53760.58490.143*
U11U22U33U12U13U23
F10.0929 (12)0.0560 (10)0.1202 (14)−0.0053 (8)0.0250 (10)−0.0258 (9)
F20.0797 (11)0.0754 (11)0.0936 (12)0.0159 (9)0.0056 (9)−0.0255 (9)
O10.0857 (13)0.0520 (11)0.0853 (13)−0.0042 (9)0.0038 (10)0.0175 (10)
O20.0897 (14)0.0537 (11)0.0929 (14)0.0125 (10)0.0351 (11)0.0150 (10)
N10.0500 (11)0.0360 (10)0.0751 (13)−0.0006 (8)0.0039 (9)−0.0005 (9)
N20.0744 (15)0.0421 (12)0.1107 (18)0.0101 (11)0.0221 (14)0.0037 (12)
N30.0678 (14)0.0404 (12)0.1064 (18)0.0058 (10)0.0220 (13)0.0086 (12)
C10.0709 (17)0.0402 (12)0.0759 (16)−0.0045 (12)0.0198 (13)−0.0027 (11)
C20.0581 (16)0.0583 (17)0.105 (2)0.0027 (13)0.0198 (15)0.0076 (15)
C30.0602 (16)0.0719 (19)0.093 (2)−0.0104 (15)0.0015 (15)0.0048 (16)
C40.0718 (17)0.0629 (16)0.0706 (17)−0.0111 (14)−0.0030 (13)−0.0067 (13)
C50.0621 (15)0.0524 (14)0.0607 (14)0.0023 (12)0.0061 (12)−0.0008 (11)
C60.0562 (13)0.0444 (12)0.0563 (13)−0.0040 (11)0.0066 (10)0.0055 (10)
C70.0614 (15)0.0506 (14)0.0658 (15)−0.0042 (11)0.0018 (12)−0.0001 (12)
C80.0439 (12)0.0359 (12)0.0769 (16)0.0018 (9)−0.0008 (11)−0.0022 (11)
C90.0460 (12)0.0375 (12)0.0775 (16)−0.0028 (10)−0.0004 (11)0.0011 (11)
C100.0534 (13)0.0434 (13)0.0759 (16)−0.0046 (11)−0.0003 (12)0.0039 (12)
C110.141 (3)0.077 (2)0.103 (3)0.020 (2)0.058 (2)0.0216 (19)
C120.105 (2)0.095 (3)0.088 (2)0.018 (2)0.0283 (18)0.0080 (19)
F1—C11.352 (3)C4—C51.368 (4)
F2—C51.352 (3)C4—H40.9300
O1—C101.202 (3)C5—C61.390 (3)
O2—C101.329 (3)C6—C71.498 (3)
O2—C111.468 (4)C7—H7B0.9700
N1—C81.335 (3)C7—H7A0.9700
N1—N21.351 (3)C8—C91.366 (3)
N1—C71.462 (3)C8—H80.9300
N2—N31.304 (3)C9—C101.466 (4)
N3—C91.356 (3)C11—C121.437 (4)
C1—C21.374 (4)C11—H11A0.9700
C1—C61.377 (3)C11—H11B0.9700
C2—C31.368 (4)C12—H12A0.9600
C2—H20.9300C12—H12C0.9600
C3—C41.369 (4)C12—H12B0.9600
C3—H30.9300
C10—O2—C11116.6 (2)C6—C7—H7B109.3
C8—N1—N2110.2 (2)N1—C7—H7A109.3
C8—N1—C7129.4 (2)C6—C7—H7A109.3
N2—N1—C7120.2 (2)H7B—C7—H7A108.0
N3—N2—N1107.8 (2)N1—C8—C9105.03 (19)
N2—N3—C9108.3 (2)N1—C8—H8127.5
F1—C1—C2118.4 (2)C9—C8—H8127.5
F1—C1—C6117.4 (2)N3—C9—C8108.6 (2)
C2—C1—C6124.2 (2)N3—C9—C10121.0 (2)
C3—C2—C1118.3 (3)C8—C9—C10130.2 (2)
C3—C2—H2120.8O1—C10—O2123.7 (2)
C1—C2—H2120.8O1—C10—C9125.8 (2)
C2—C3—C4120.9 (3)O2—C10—C9110.4 (2)
C2—C3—H3119.5C12—C11—O2108.9 (3)
C4—C3—H3119.5C12—C11—H11A109.9
C5—C4—C3118.2 (3)O2—C11—H11A109.9
C5—C4—H4120.9C12—C11—H11B109.9
C3—C4—H4120.9O2—C11—H11B109.9
F2—C5—C4118.5 (2)H11A—C11—H11B108.3
F2—C5—C6117.3 (2)C11—C12—H12A109.5
C4—C5—C6124.2 (2)C11—C12—H12C109.5
C1—C6—C5114.1 (2)H12A—C12—H12C109.5
C1—C6—C7123.8 (2)C11—C12—H12B109.5
C5—C6—C7122.0 (2)H12A—C12—H12B109.5
N1—C7—C6111.7 (2)H12C—C12—H12B109.5
N1—C7—H7B109.3
C8—N1—N2—N3−0.5 (3)C8—N1—C7—C6100.9 (3)
C7—N1—N2—N3176.4 (2)N2—N1—C7—C6−75.2 (3)
N1—N2—N3—C90.0 (3)C1—C6—C7—N199.0 (3)
F1—C1—C2—C3179.3 (3)C5—C6—C7—N1−81.2 (3)
C6—C1—C2—C30.1 (4)N2—N1—C8—C90.7 (3)
C1—C2—C3—C4−0.6 (4)C7—N1—C8—C9−175.8 (2)
C2—C3—C4—C51.4 (4)N2—N3—C9—C80.4 (3)
C3—C4—C5—F2178.5 (3)N2—N3—C9—C10−175.6 (2)
C3—C4—C5—C6−1.9 (4)N1—C8—C9—N3−0.7 (3)
F1—C1—C6—C5−179.7 (2)N1—C8—C9—C10174.9 (2)
C2—C1—C6—C5−0.5 (4)C11—O2—C10—O12.7 (4)
F1—C1—C6—C70.1 (4)C11—O2—C10—C9−176.0 (3)
C2—C1—C6—C7179.4 (2)N3—C9—C10—O13.0 (4)
F2—C5—C6—C1−179.0 (2)C8—C9—C10—O1−172.1 (3)
C4—C5—C6—C11.4 (4)N3—C9—C10—O2−178.3 (2)
F2—C5—C6—C71.2 (3)C8—C9—C10—O26.6 (4)
C4—C5—C6—C7−178.4 (2)C10—O2—C11—C12−179.3 (3)
D—H···AD—HH···AD···AD—H···A
C7—H7A···F10.972.462.833 (3)103.
C7—H7B···O1i0.972.473.415 (3)166.
C8—H8···N3i0.932.613.536 (3)172.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7B⋯O1i0.972.473.415 (3)166
C8—H8⋯N3i0.932.613.536 (3)172

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  [Rufinamide. A review of its pharmacokinetic and pharmacodynamic properties].

Authors:  J L Herranz
Journal:  Rev Neurol       Date:  2008 Oct 1-15       Impact factor: 0.870

3.  5-Methyl-1-(3-nitro-benz-yl)-1H-1,2,3-triazole-4-carboxylic acid monohydrate.

Authors:  Jie Xiao; Wen Xiang Wang; Hong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  1-[1-(2,1,3-Benzoxadiazol-5-ylmeth-yl)-1H-1,2,3-triazol-4-yl]hexan-1-one.

Authors:  Jessie A Key; Christopher W Cairo; Robert McDonald
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13
  1 in total

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