Literature DB >> 21522433

N-[(4-Carbamoylphen-yl)carbamothio-yl]-2,3,4,5-tetra-fluoro-benzamide.

Li-Dan Zhang, Chao Gao, Xue-Jiao Song, Luo-Ting Yu.   

Abstract

In the title compound, C(15)H(9)F(4)N(3)O(2)S, the N,N'-disubstituted thio-urea fragment adopts a cis,trans geometry, stabilized by an intra-molecular N-H⋯O hydrogen bond to the carbonyl O atom of the tetra-fluoro-benzoyl group. The central thio-urea group makes dihedral angles of 47.79 (7) and 35.54 (8)° with the two aromatic rings. In the crystal, mol-ecules are linked via N-H⋯O and N-H⋯S hydrogen bonds into two-dimensional polymeric structures parallel to (100). In turn, π-π stacking inter-actions between tetra-fluoro-benzene and benzene units [centroid-centroid distance = 3.996 (10) Å; dihedral angle = 13.60 (8)°] organize these two-dimensional assemblies into a three-dimensional framework.

Entities:  

Year:  2011        PMID: 21522433      PMCID: PMC3051937          DOI: 10.1107/S1600536811005915

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­urea derivatives, see: Zeng et al. (2003 ▶); Saeed et al. (2010 ▶). For the synthesis of thio­urea derivatives, see: Nosova et al. (2007 ▶). For related structures, see: Saeed et al. (2008 ▶, 2009 ▶).

Experimental

Crystal data

C15H9F4N3O2S M = 371.31 Monoclinic, a = 7.4246 (3) Å b = 20.3368 (7) Å c = 9.8954 (4) Å β = 95.554 (3)° V = 1487.12 (9) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 294 K 0.38 × 0.30 × 0.26 mm

Data collection

Oxford Diffraction Xcalibur E CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.860, T max = 1.0 6598 measured reflections 3031 independent reflections 2263 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.103 S = 1.13 3031 reflections 226 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005915/gk2335sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005915/gk2335Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H9F4N3O2SF(000) = 752
Mr = 371.31Dx = 1.658 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 3669 reflections
a = 7.4246 (3) Åθ = 3.3–29.2°
b = 20.3368 (7) ŵ = 0.28 mm1
c = 9.8954 (4) ÅT = 294 K
β = 95.554 (3)°Block, colourless
V = 1487.12 (9) Å30.38 × 0.30 × 0.26 mm
Z = 4
Oxford Diffraction Xcalibur E CCD diffractometer3031 independent reflections
Radiation source: fine-focus sealed tube2263 reflections with I > 2σ(I)
graphiteRint = 0.014
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.4°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006)k = −25→21
Tmin = 0.860, Tmax = 1.0l = −11→12
6598 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.056P)2] where P = (Fo2 + 2Fc2)/3
3031 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.41600 (7)0.40876 (2)0.28889 (6)0.05125 (18)
F0.98701 (18)0.10215 (6)−0.07009 (12)0.0623 (4)
F10.66951 (14)0.21050 (5)0.34645 (9)0.0445 (3)
F20.72451 (16)0.08149 (5)0.33952 (12)0.0543 (3)
F30.87569 (17)0.02540 (5)0.12899 (13)0.0635 (4)
O10.66762 (17)0.73716 (6)0.33958 (11)0.0386 (3)
O20.91223 (18)0.33325 (6)0.09914 (14)0.0471 (3)
N10.7405 (2)0.75363 (7)0.12865 (14)0.0434 (4)
H1B0.73400.79560.13820.052*
H1A0.76830.73730.05320.052*
N20.7175 (2)0.43553 (7)0.17165 (14)0.0390 (4)
H20.80460.42000.13000.047*
N30.64026 (19)0.32604 (7)0.18763 (14)0.0356 (3)
H30.55800.29810.20360.043*
C10.7076 (2)0.71401 (8)0.23066 (16)0.0304 (4)
C20.7164 (2)0.64135 (8)0.21097 (16)0.0286 (4)
C30.7548 (3)0.61151 (9)0.09123 (18)0.0392 (4)
H3A0.78230.63720.01820.047*
C40.7524 (3)0.54374 (9)0.07970 (18)0.0425 (5)
H40.77710.5241−0.00130.051*
C50.7133 (2)0.50499 (8)0.18833 (17)0.0343 (4)
C60.6795 (2)0.53412 (8)0.30877 (17)0.0367 (4)
H60.65660.50830.38280.044*
C70.6796 (2)0.60191 (8)0.31958 (16)0.0329 (4)
H70.65460.62140.40070.039*
C80.6006 (2)0.39170 (8)0.21371 (17)0.0345 (4)
C90.7920 (2)0.30012 (9)0.14025 (17)0.0338 (4)
C100.8043 (2)0.22623 (8)0.14010 (16)0.0315 (4)
C110.8887 (2)0.19686 (9)0.03581 (18)0.0369 (4)
H110.93150.2228−0.03160.044*
C120.9089 (2)0.13022 (9)0.03208 (19)0.0410 (4)
C130.8521 (3)0.09051 (8)0.1325 (2)0.0414 (5)
C140.7735 (2)0.11852 (8)0.23825 (18)0.0369 (4)
C150.7476 (2)0.18583 (8)0.24020 (16)0.0326 (4)
U11U22U33U12U13U23
S10.0543 (3)0.0289 (3)0.0750 (4)0.0028 (2)0.0295 (3)−0.0031 (2)
F0.0717 (9)0.0532 (7)0.0638 (8)0.0202 (6)0.0162 (6)−0.0171 (6)
F10.0550 (7)0.0402 (6)0.0394 (6)0.0026 (5)0.0093 (5)0.0001 (5)
F20.0617 (8)0.0366 (6)0.0643 (7)−0.0022 (5)0.0052 (6)0.0184 (5)
F30.0688 (8)0.0237 (6)0.0975 (10)0.0083 (5)0.0051 (7)−0.0067 (6)
O10.0568 (8)0.0293 (7)0.0305 (6)0.0036 (6)0.0085 (6)−0.0027 (5)
O20.0453 (8)0.0312 (7)0.0677 (9)−0.0037 (6)0.0199 (7)0.0007 (6)
N10.0702 (11)0.0250 (8)0.0374 (8)−0.0013 (7)0.0174 (8)0.0019 (7)
N20.0480 (9)0.0228 (7)0.0488 (9)−0.0001 (7)0.0181 (7)−0.0001 (7)
N30.0392 (8)0.0215 (7)0.0481 (9)0.0008 (6)0.0145 (7)0.0009 (6)
C10.0333 (9)0.0274 (9)0.0303 (9)0.0002 (7)0.0031 (7)0.0003 (7)
C20.0310 (9)0.0245 (9)0.0303 (8)0.0002 (7)0.0028 (7)0.0005 (7)
C30.0559 (12)0.0280 (9)0.0359 (10)−0.0041 (8)0.0166 (9)0.0013 (8)
C40.0614 (12)0.0293 (10)0.0398 (10)−0.0009 (9)0.0206 (9)−0.0057 (8)
C50.0409 (10)0.0213 (9)0.0416 (10)−0.0004 (7)0.0075 (8)0.0002 (7)
C60.0509 (11)0.0273 (9)0.0319 (9)−0.0022 (8)0.0037 (8)0.0056 (7)
C70.0432 (10)0.0288 (9)0.0269 (8)−0.0004 (7)0.0042 (7)−0.0007 (7)
C80.0434 (10)0.0233 (9)0.0371 (9)0.0023 (7)0.0060 (8)0.0010 (7)
C90.0368 (10)0.0271 (9)0.0377 (9)0.0016 (7)0.0045 (7)0.0004 (7)
C100.0310 (9)0.0252 (9)0.0380 (9)0.0018 (7)0.0015 (7)−0.0003 (7)
C110.0342 (9)0.0341 (10)0.0426 (10)0.0040 (8)0.0043 (8)0.0013 (8)
C120.0387 (10)0.0364 (10)0.0475 (11)0.0104 (8)0.0022 (8)−0.0113 (9)
C130.0389 (10)0.0221 (9)0.0612 (12)0.0040 (8)−0.0061 (9)−0.0046 (9)
C140.0350 (10)0.0275 (9)0.0469 (10)−0.0027 (7)−0.0032 (8)0.0060 (8)
C150.0296 (9)0.0313 (9)0.0366 (9)0.0018 (7)0.0022 (7)−0.0011 (8)
S1—C81.6583 (18)C2—C71.389 (2)
F—C121.341 (2)C3—H3A0.9300
F1—C151.3458 (18)C3—C41.383 (2)
F2—C141.332 (2)C4—H40.9300
F3—C131.3365 (18)C4—C51.386 (2)
O1—C11.2383 (18)C5—C61.376 (2)
O2—C91.219 (2)C6—H60.9300
N1—H1B0.8600C6—C71.383 (2)
N1—H1A0.8600C7—H70.9300
N1—C11.333 (2)C9—C101.505 (2)
N2—H20.8600C10—C111.393 (2)
N2—C51.423 (2)C10—C151.384 (2)
N2—C81.338 (2)C11—H110.9300
N3—H30.8600C11—C121.364 (2)
N3—C81.397 (2)C12—C131.378 (3)
N3—C91.367 (2)C13—C141.370 (3)
C1—C21.493 (2)C14—C151.383 (2)
C2—C31.385 (2)
F—C12—C11119.99 (18)C4—C3—H3A119.8
F—C12—C13118.62 (16)C4—C5—N2117.77 (15)
F1—C15—C10121.45 (14)C5—N2—H2116.5
F1—C15—C14116.81 (15)C5—C4—H4119.8
F2—C14—C13120.47 (15)C5—C6—H6120.1
F2—C14—C15120.04 (16)C5—C6—C7119.84 (15)
F3—C13—C12120.80 (18)C6—C5—N2122.40 (15)
F3—C13—C14119.87 (18)C6—C5—C4119.77 (15)
O1—C1—N1120.43 (15)C6—C7—C2120.96 (15)
O1—C1—C2120.47 (14)C6—C7—H7119.5
O2—C9—N3123.76 (16)C7—C2—C1117.15 (14)
O2—C9—C10120.32 (15)C7—C6—H6120.1
N1—C1—C2119.09 (14)C8—N2—H2116.5
H1B—N1—H1A120.0C8—N2—C5127.09 (15)
N2—C8—S1126.10 (13)C8—N3—H3115.6
N2—C8—N3115.14 (15)C9—N3—H3115.6
N3—C8—S1118.75 (12)C9—N3—C8128.85 (14)
N3—C9—C10115.92 (14)C10—C11—H11119.9
C1—N1—H1B120.0C11—C10—C9117.41 (15)
C1—N1—H1A120.0C11—C12—C13121.38 (17)
C2—C3—H3A119.8C12—C11—C10120.29 (17)
C2—C7—H7119.5C12—C11—H11119.9
C3—C2—C1124.10 (15)C13—C14—C15119.49 (16)
C3—C2—C7118.74 (15)C14—C13—C12119.32 (15)
C3—C4—H4119.8C14—C15—C10121.71 (15)
C3—C4—C5120.31 (16)C15—C10—C9124.72 (15)
C4—C3—C2120.34 (16)C15—C10—C11117.75 (15)
F—C12—C13—F30.6 (3)C5—N2—C8—N3−178.02 (15)
F—C12—C13—C14179.40 (16)C5—C6—C7—C2−1.1 (3)
F2—C14—C15—F1−1.0 (2)C7—C2—C3—C41.4 (3)
F2—C14—C15—C10177.00 (15)C8—N2—C5—C4−138.63 (19)
F3—C13—C14—F21.7 (3)C8—N2—C5—C644.1 (3)
F3—C13—C14—C15−179.20 (15)C8—N3—C9—O2−8.1 (3)
O1—C1—C2—C3178.02 (16)C8—N3—C9—C10172.27 (16)
O1—C1—C2—C7−0.5 (2)C9—N3—C8—S1−172.62 (14)
O2—C9—C10—C11−33.5 (2)C9—N3—C8—N28.7 (3)
O2—C9—C10—C15142.48 (18)C9—C10—C11—C12178.10 (15)
N1—C1—C2—C3−0.9 (3)C9—C10—C15—F12.2 (2)
N1—C1—C2—C7−179.44 (15)C9—C10—C15—C14−175.74 (15)
N2—C5—C6—C7179.11 (16)C10—C11—C12—F178.65 (16)
N3—C9—C10—C11146.16 (16)C10—C11—C12—C13−2.0 (3)
N3—C9—C10—C15−37.9 (2)C11—C10—C15—F1178.11 (14)
C1—C2—C3—C4−177.14 (16)C11—C10—C15—C140.2 (2)
C1—C2—C7—C6178.11 (16)C11—C12—C13—F3−178.74 (16)
C2—C3—C4—C5−0.6 (3)C11—C12—C13—C140.1 (3)
C3—C2—C7—C6−0.5 (3)C12—C13—C14—F2−177.14 (15)
C3—C4—C5—N2−178.38 (17)C12—C13—C14—C152.0 (3)
C3—C4—C5—C6−1.0 (3)C13—C14—C15—F1179.87 (15)
C4—C5—C6—C71.9 (3)C13—C14—C15—C10−2.1 (3)
C5—N2—C8—S13.4 (3)C15—C10—C11—C121.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1B···S1i0.862.693.4861 (16)155
N1—H1A···O1ii0.862.232.8654 (17)130
N2—H2···O20.861.972.6708 (18)138
N3—H3···F10.862.372.8234 (17)113
N3—H3···O1iii0.862.092.9062 (18)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯S1i0.862.693.4861 (16)155
N1—H1A⋯O1ii0.862.232.8654 (17)130
N2—H2⋯O20.861.972.6708 (18)138
N3—H3⋯O1iii0.862.092.9062 (18)157

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and biological evaluation of some thiourea derivatives bearing benzothiazole moiety as potential antimicrobial and anticancer agents.

Authors:  Sohail Saeed; Naghmana Rashid; Peter G Jones; Muhammad Ali; Rizwan Hussain
Journal:  Eur J Med Chem       Date:  2009-12-16       Impact factor: 6.514

3.  Novel synthesis of 1-aroyl-3-aryl-4-substituted imidazole-2-thiones.

Authors:  Run-Sheng Zeng; Jian-Ping Zou; San-Jun Zhi; Jun Chen; Qi Shen
Journal:  Org Lett       Date:  2003-05-15       Impact factor: 6.005

4.  Ethyl 4-(3-benzoyl-thio-ureido)benzoate.

Authors:  Sohail Saeed; Moazzam Hussain Bhatti; Uzma Yunus; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12

5.  1-(4-Bromo-phen-yl)-1-(4-nitro-benzo-yl)thio-urea.

Authors:  Sohail Saeed; Naghmana Rashid; Arifa Tahir; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.