| Literature DB >> 21522433 |
Li-Dan Zhang, Chao Gao, Xue-Jiao Song, Luo-Ting Yu.
Abstract
In the title compound, C(15)H(9)F(4)N(3)O(2)S, the N,N'-disubstituted thio-urea fragment adopts a cis,trans geometry, stabilized by an intra-molecular N-H⋯O hydrogen bond to the carbonyl O atom of the tetra-fluoro-benzoyl group. The central thio-urea group makes dihedral angles of 47.79 (7) and 35.54 (8)° with the two aromatic rings. In the crystal, mol-ecules are linked via N-H⋯O and N-H⋯S hydrogen bonds into two-dimensional polymeric structures parallel to (100). In turn, π-π stacking inter-actions between tetra-fluoro-benzene and benzene units [centroid-centroid distance = 3.996 (10) Å; dihedral angle = 13.60 (8)°] organize these two-dimensional assemblies into a three-dimensional framework.Entities:
Year: 2011 PMID: 21522433 PMCID: PMC3051937 DOI: 10.1107/S1600536811005915
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H9F4N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3669 reflections |
| θ = 3.3–29.2° | |
| µ = 0.28 mm−1 | |
| β = 95.554 (3)° | Block, colourless |
| 0.38 × 0.30 × 0.26 mm | |
| Oxford Diffraction Xcalibur E CCD diffractometer | 3031 independent reflections |
| Radiation source: fine-focus sealed tube | 2263 reflections with |
| graphite | |
| Detector resolution: 16.0874 pixels mm-1 | θmax = 26.4°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6598 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3031 reflections | (Δ/σ)max < 0.001 |
| 226 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.41600 (7) | 0.40876 (2) | 0.28889 (6) | 0.05125 (18) | |
| F | 0.98701 (18) | 0.10215 (6) | −0.07009 (12) | 0.0623 (4) | |
| F1 | 0.66951 (14) | 0.21050 (5) | 0.34645 (9) | 0.0445 (3) | |
| F2 | 0.72451 (16) | 0.08149 (5) | 0.33952 (12) | 0.0543 (3) | |
| F3 | 0.87569 (17) | 0.02540 (5) | 0.12899 (13) | 0.0635 (4) | |
| O1 | 0.66762 (17) | 0.73716 (6) | 0.33958 (11) | 0.0386 (3) | |
| O2 | 0.91223 (18) | 0.33325 (6) | 0.09914 (14) | 0.0471 (3) | |
| N1 | 0.7405 (2) | 0.75363 (7) | 0.12865 (14) | 0.0434 (4) | |
| H1B | 0.7340 | 0.7956 | 0.1382 | 0.052* | |
| H1A | 0.7683 | 0.7373 | 0.0532 | 0.052* | |
| N2 | 0.7175 (2) | 0.43553 (7) | 0.17165 (14) | 0.0390 (4) | |
| H2 | 0.8046 | 0.4200 | 0.1300 | 0.047* | |
| N3 | 0.64026 (19) | 0.32604 (7) | 0.18763 (14) | 0.0356 (3) | |
| H3 | 0.5580 | 0.2981 | 0.2036 | 0.043* | |
| C1 | 0.7076 (2) | 0.71401 (8) | 0.23066 (16) | 0.0304 (4) | |
| C2 | 0.7164 (2) | 0.64135 (8) | 0.21097 (16) | 0.0286 (4) | |
| C3 | 0.7548 (3) | 0.61151 (9) | 0.09123 (18) | 0.0392 (4) | |
| H3A | 0.7823 | 0.6372 | 0.0182 | 0.047* | |
| C4 | 0.7524 (3) | 0.54374 (9) | 0.07970 (18) | 0.0425 (5) | |
| H4 | 0.7771 | 0.5241 | −0.0013 | 0.051* | |
| C5 | 0.7133 (2) | 0.50499 (8) | 0.18833 (17) | 0.0343 (4) | |
| C6 | 0.6795 (2) | 0.53412 (8) | 0.30877 (17) | 0.0367 (4) | |
| H6 | 0.6566 | 0.5083 | 0.3828 | 0.044* | |
| C7 | 0.6796 (2) | 0.60191 (8) | 0.31958 (16) | 0.0329 (4) | |
| H7 | 0.6546 | 0.6214 | 0.4007 | 0.039* | |
| C8 | 0.6006 (2) | 0.39170 (8) | 0.21371 (17) | 0.0345 (4) | |
| C9 | 0.7920 (2) | 0.30012 (9) | 0.14025 (17) | 0.0338 (4) | |
| C10 | 0.8043 (2) | 0.22623 (8) | 0.14010 (16) | 0.0315 (4) | |
| C11 | 0.8887 (2) | 0.19686 (9) | 0.03581 (18) | 0.0369 (4) | |
| H11 | 0.9315 | 0.2228 | −0.0316 | 0.044* | |
| C12 | 0.9089 (2) | 0.13022 (9) | 0.03208 (19) | 0.0410 (4) | |
| C13 | 0.8521 (3) | 0.09051 (8) | 0.1325 (2) | 0.0414 (5) | |
| C14 | 0.7735 (2) | 0.11852 (8) | 0.23825 (18) | 0.0369 (4) | |
| C15 | 0.7476 (2) | 0.18583 (8) | 0.24020 (16) | 0.0326 (4) |
| S1 | 0.0543 (3) | 0.0289 (3) | 0.0750 (4) | 0.0028 (2) | 0.0295 (3) | −0.0031 (2) |
| F | 0.0717 (9) | 0.0532 (7) | 0.0638 (8) | 0.0202 (6) | 0.0162 (6) | −0.0171 (6) |
| F1 | 0.0550 (7) | 0.0402 (6) | 0.0394 (6) | 0.0026 (5) | 0.0093 (5) | 0.0001 (5) |
| F2 | 0.0617 (8) | 0.0366 (6) | 0.0643 (7) | −0.0022 (5) | 0.0052 (6) | 0.0184 (5) |
| F3 | 0.0688 (8) | 0.0237 (6) | 0.0975 (10) | 0.0083 (5) | 0.0051 (7) | −0.0067 (6) |
| O1 | 0.0568 (8) | 0.0293 (7) | 0.0305 (6) | 0.0036 (6) | 0.0085 (6) | −0.0027 (5) |
| O2 | 0.0453 (8) | 0.0312 (7) | 0.0677 (9) | −0.0037 (6) | 0.0199 (7) | 0.0007 (6) |
| N1 | 0.0702 (11) | 0.0250 (8) | 0.0374 (8) | −0.0013 (7) | 0.0174 (8) | 0.0019 (7) |
| N2 | 0.0480 (9) | 0.0228 (7) | 0.0488 (9) | −0.0001 (7) | 0.0181 (7) | −0.0001 (7) |
| N3 | 0.0392 (8) | 0.0215 (7) | 0.0481 (9) | 0.0008 (6) | 0.0145 (7) | 0.0009 (6) |
| C1 | 0.0333 (9) | 0.0274 (9) | 0.0303 (9) | 0.0002 (7) | 0.0031 (7) | 0.0003 (7) |
| C2 | 0.0310 (9) | 0.0245 (9) | 0.0303 (8) | 0.0002 (7) | 0.0028 (7) | 0.0005 (7) |
| C3 | 0.0559 (12) | 0.0280 (9) | 0.0359 (10) | −0.0041 (8) | 0.0166 (9) | 0.0013 (8) |
| C4 | 0.0614 (12) | 0.0293 (10) | 0.0398 (10) | −0.0009 (9) | 0.0206 (9) | −0.0057 (8) |
| C5 | 0.0409 (10) | 0.0213 (9) | 0.0416 (10) | −0.0004 (7) | 0.0075 (8) | 0.0002 (7) |
| C6 | 0.0509 (11) | 0.0273 (9) | 0.0319 (9) | −0.0022 (8) | 0.0037 (8) | 0.0056 (7) |
| C7 | 0.0432 (10) | 0.0288 (9) | 0.0269 (8) | −0.0004 (7) | 0.0042 (7) | −0.0007 (7) |
| C8 | 0.0434 (10) | 0.0233 (9) | 0.0371 (9) | 0.0023 (7) | 0.0060 (8) | 0.0010 (7) |
| C9 | 0.0368 (10) | 0.0271 (9) | 0.0377 (9) | 0.0016 (7) | 0.0045 (7) | 0.0004 (7) |
| C10 | 0.0310 (9) | 0.0252 (9) | 0.0380 (9) | 0.0018 (7) | 0.0015 (7) | −0.0003 (7) |
| C11 | 0.0342 (9) | 0.0341 (10) | 0.0426 (10) | 0.0040 (8) | 0.0043 (8) | 0.0013 (8) |
| C12 | 0.0387 (10) | 0.0364 (10) | 0.0475 (11) | 0.0104 (8) | 0.0022 (8) | −0.0113 (9) |
| C13 | 0.0389 (10) | 0.0221 (9) | 0.0612 (12) | 0.0040 (8) | −0.0061 (9) | −0.0046 (9) |
| C14 | 0.0350 (10) | 0.0275 (9) | 0.0469 (10) | −0.0027 (7) | −0.0032 (8) | 0.0060 (8) |
| C15 | 0.0296 (9) | 0.0313 (9) | 0.0366 (9) | 0.0018 (7) | 0.0022 (7) | −0.0011 (8) |
| S1—C8 | 1.6583 (18) | C2—C7 | 1.389 (2) |
| F—C12 | 1.341 (2) | C3—H3A | 0.9300 |
| F1—C15 | 1.3458 (18) | C3—C4 | 1.383 (2) |
| F2—C14 | 1.332 (2) | C4—H4 | 0.9300 |
| F3—C13 | 1.3365 (18) | C4—C5 | 1.386 (2) |
| O1—C1 | 1.2383 (18) | C5—C6 | 1.376 (2) |
| O2—C9 | 1.219 (2) | C6—H6 | 0.9300 |
| N1—H1B | 0.8600 | C6—C7 | 1.383 (2) |
| N1—H1A | 0.8600 | C7—H7 | 0.9300 |
| N1—C1 | 1.333 (2) | C9—C10 | 1.505 (2) |
| N2—H2 | 0.8600 | C10—C11 | 1.393 (2) |
| N2—C5 | 1.423 (2) | C10—C15 | 1.384 (2) |
| N2—C8 | 1.338 (2) | C11—H11 | 0.9300 |
| N3—H3 | 0.8600 | C11—C12 | 1.364 (2) |
| N3—C8 | 1.397 (2) | C12—C13 | 1.378 (3) |
| N3—C9 | 1.367 (2) | C13—C14 | 1.370 (3) |
| C1—C2 | 1.493 (2) | C14—C15 | 1.383 (2) |
| C2—C3 | 1.385 (2) | ||
| F—C12—C11 | 119.99 (18) | C4—C3—H3A | 119.8 |
| F—C12—C13 | 118.62 (16) | C4—C5—N2 | 117.77 (15) |
| F1—C15—C10 | 121.45 (14) | C5—N2—H2 | 116.5 |
| F1—C15—C14 | 116.81 (15) | C5—C4—H4 | 119.8 |
| F2—C14—C13 | 120.47 (15) | C5—C6—H6 | 120.1 |
| F2—C14—C15 | 120.04 (16) | C5—C6—C7 | 119.84 (15) |
| F3—C13—C12 | 120.80 (18) | C6—C5—N2 | 122.40 (15) |
| F3—C13—C14 | 119.87 (18) | C6—C5—C4 | 119.77 (15) |
| O1—C1—N1 | 120.43 (15) | C6—C7—C2 | 120.96 (15) |
| O1—C1—C2 | 120.47 (14) | C6—C7—H7 | 119.5 |
| O2—C9—N3 | 123.76 (16) | C7—C2—C1 | 117.15 (14) |
| O2—C9—C10 | 120.32 (15) | C7—C6—H6 | 120.1 |
| N1—C1—C2 | 119.09 (14) | C8—N2—H2 | 116.5 |
| H1B—N1—H1A | 120.0 | C8—N2—C5 | 127.09 (15) |
| N2—C8—S1 | 126.10 (13) | C8—N3—H3 | 115.6 |
| N2—C8—N3 | 115.14 (15) | C9—N3—H3 | 115.6 |
| N3—C8—S1 | 118.75 (12) | C9—N3—C8 | 128.85 (14) |
| N3—C9—C10 | 115.92 (14) | C10—C11—H11 | 119.9 |
| C1—N1—H1B | 120.0 | C11—C10—C9 | 117.41 (15) |
| C1—N1—H1A | 120.0 | C11—C12—C13 | 121.38 (17) |
| C2—C3—H3A | 119.8 | C12—C11—C10 | 120.29 (17) |
| C2—C7—H7 | 119.5 | C12—C11—H11 | 119.9 |
| C3—C2—C1 | 124.10 (15) | C13—C14—C15 | 119.49 (16) |
| C3—C2—C7 | 118.74 (15) | C14—C13—C12 | 119.32 (15) |
| C3—C4—H4 | 119.8 | C14—C15—C10 | 121.71 (15) |
| C3—C4—C5 | 120.31 (16) | C15—C10—C9 | 124.72 (15) |
| C4—C3—C2 | 120.34 (16) | C15—C10—C11 | 117.75 (15) |
| F—C12—C13—F3 | 0.6 (3) | C5—N2—C8—N3 | −178.02 (15) |
| F—C12—C13—C14 | 179.40 (16) | C5—C6—C7—C2 | −1.1 (3) |
| F2—C14—C15—F1 | −1.0 (2) | C7—C2—C3—C4 | 1.4 (3) |
| F2—C14—C15—C10 | 177.00 (15) | C8—N2—C5—C4 | −138.63 (19) |
| F3—C13—C14—F2 | 1.7 (3) | C8—N2—C5—C6 | 44.1 (3) |
| F3—C13—C14—C15 | −179.20 (15) | C8—N3—C9—O2 | −8.1 (3) |
| O1—C1—C2—C3 | 178.02 (16) | C8—N3—C9—C10 | 172.27 (16) |
| O1—C1—C2—C7 | −0.5 (2) | C9—N3—C8—S1 | −172.62 (14) |
| O2—C9—C10—C11 | −33.5 (2) | C9—N3—C8—N2 | 8.7 (3) |
| O2—C9—C10—C15 | 142.48 (18) | C9—C10—C11—C12 | 178.10 (15) |
| N1—C1—C2—C3 | −0.9 (3) | C9—C10—C15—F1 | 2.2 (2) |
| N1—C1—C2—C7 | −179.44 (15) | C9—C10—C15—C14 | −175.74 (15) |
| N2—C5—C6—C7 | 179.11 (16) | C10—C11—C12—F | 178.65 (16) |
| N3—C9—C10—C11 | 146.16 (16) | C10—C11—C12—C13 | −2.0 (3) |
| N3—C9—C10—C15 | −37.9 (2) | C11—C10—C15—F1 | 178.11 (14) |
| C1—C2—C3—C4 | −177.14 (16) | C11—C10—C15—C14 | 0.2 (2) |
| C1—C2—C7—C6 | 178.11 (16) | C11—C12—C13—F3 | −178.74 (16) |
| C2—C3—C4—C5 | −0.6 (3) | C11—C12—C13—C14 | 0.1 (3) |
| C3—C2—C7—C6 | −0.5 (3) | C12—C13—C14—F2 | −177.14 (15) |
| C3—C4—C5—N2 | −178.38 (17) | C12—C13—C14—C15 | 2.0 (3) |
| C3—C4—C5—C6 | −1.0 (3) | C13—C14—C15—F1 | 179.87 (15) |
| C4—C5—C6—C7 | 1.9 (3) | C13—C14—C15—C10 | −2.1 (3) |
| C5—N2—C8—S1 | 3.4 (3) | C15—C10—C11—C12 | 1.9 (2) |
| H··· | ||||
| N1—H1B···S1i | 0.86 | 2.69 | 3.4861 (16) | 155 |
| N1—H1A···O1ii | 0.86 | 2.23 | 2.8654 (17) | 130 |
| N2—H2···O2 | 0.86 | 1.97 | 2.6708 (18) | 138 |
| N3—H3···F1 | 0.86 | 2.37 | 2.8234 (17) | 113 |
| N3—H3···O1iii | 0.86 | 2.09 | 2.9062 (18) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.69 | 3.4861 (16) | 155 |
| N1—H1 | 0.86 | 2.23 | 2.8654 (17) | 130 |
| N2—H2⋯O2 | 0.86 | 1.97 | 2.6708 (18) | 138 |
| N3—H3⋯O1iii | 0.86 | 2.09 | 2.9062 (18) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) .