Literature DB >> 21522401

(E)-1-(4-Chloro-benzyl-idene)thio-semi-carbazide.

Aamer Saeed, Shams-Ul Mahmood, Michael Bolte, Abdul Rauf, Mohammad Subhan.   

Abstract

In the crystal of the title compound, C(8)H(8)ClN(3)S, mol-ecules are connected by N-H⋯S n class="Chemical">hydrogen bonds into strips parallel to the (112) planes and running along [10]. One of the amino H atoms is not involved in a classical hydrogen bond. In addition, there is a rather short inter-molecular Cl⋯S distance of 3.3814 (5) Å.

Entities:  

Year:  2011        PMID: 21522401      PMCID: PMC3052038          DOI: 10.1107/S1600536811004120

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases, see: Mobinikhaledi et al. (2010 ▶); Hamaker et al. (2010 ▶); Mirkhani et al. (2010 ▶); Thangadurai et al. (2002 ▶). Ji & Lu (2010a ▶,b ▶); Lü et al. (2008 ▶). For a related structure, see: Zhang & Li (2008 ▶). For bioactivity, see: Chohan et al. (2004 ▶).

Experimental

Crystal data

C8H8ClN3S M = 213.68 Triclinic, a = 5.7611 (5) Å b = 7.8329 (7) Å c = 11.2016 (10) Å α = 83.852 (7)° β = 75.373 (7)° γ = 76.353 (7)° V = 474.69 (7) Å3 Z = 2 Mo Kα radiation μ = 0.58 mm−1 T = 173 K 0.38 × 0.35 × 0.27 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan (MULABS; Spek, 2009; ▶ Blessing, 1995 ▶) T min = 0.811, T max = 0.860 8657 measured reflections 2179 independent reflections 2054 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.079 S = 1.10 2179 reflections 131 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004120/bg2386sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004120/bg2386Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8ClN3SZ = 2
Mr = 213.68F(000) = 220
Triclinic, P1Dx = 1.495 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7611 (5) ÅCell parameters from 7492 reflections
b = 7.8329 (7) Åθ = 3.4–27.8°
c = 11.2016 (10) ŵ = 0.58 mm1
α = 83.852 (7)°T = 173 K
β = 75.373 (7)°Block, colourless
γ = 76.353 (7)°0.38 × 0.35 × 0.27 mm
V = 474.69 (7) Å3
Stoe IPDS II two-circle diffractometer2179 independent reflections
Radiation source: fine-focus sealed tube2054 reflections with I > 2σ(I)
graphiteRint = 0.055
ω scansθmax = 27.7°, θmin = 3.4°
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995)h = −7→7
Tmin = 0.811, Tmax = 0.860k = −10→10
8657 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.079w = 1/[σ2(Fo2) + (0.0425P)2 + 0.1107P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
2179 reflectionsΔρmax = 0.39 e Å3
131 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.061 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.16691 (5)0.24404 (4)0.64870 (3)0.02702 (12)
S11.79101 (5)0.26359 (4)−0.06509 (3)0.02625 (12)
N11.18834 (19)0.23473 (14)0.18778 (10)0.0215 (2)
N21.35359 (19)0.28547 (14)0.08531 (10)0.0220 (2)
H21.322 (3)0.392 (3)0.0550 (17)0.033 (4)*
N31.6366 (2)0.03361 (14)0.11273 (11)0.0256 (2)
H3A1.787 (3)−0.030 (3)0.0942 (17)0.037 (5)*
H3B1.529 (4)0.002 (2)0.1674 (19)0.037 (5)*
C10.9739 (2)0.33723 (16)0.20735 (11)0.0206 (2)
H10.94080.43330.15030.025*
C21.5844 (2)0.18669 (15)0.05230 (11)0.0200 (2)
C110.7791 (2)0.30948 (15)0.31550 (11)0.0194 (2)
C120.8261 (2)0.19449 (17)0.41513 (12)0.0258 (3)
H120.98870.12970.41290.031*
C130.6388 (2)0.17389 (17)0.51702 (12)0.0275 (3)
H130.67210.09620.58470.033*
C140.4012 (2)0.26838 (16)0.51905 (11)0.0209 (2)
C150.3492 (2)0.38356 (16)0.42174 (11)0.0221 (2)
H150.18590.44700.42410.027*
C160.5394 (2)0.40491 (16)0.32075 (11)0.0216 (2)
H160.50600.48550.25440.026*
U11U22U33U12U13U23
Cl10.02137 (17)0.02970 (19)0.02380 (18)−0.00376 (12)0.00323 (12)0.00098 (12)
S10.01985 (17)0.02394 (18)0.02535 (18)0.00043 (12)0.00505 (12)0.00406 (12)
N10.0187 (5)0.0228 (5)0.0206 (5)−0.0050 (4)0.0009 (4)−0.0024 (4)
N20.0171 (5)0.0214 (5)0.0217 (5)−0.0008 (4)0.0018 (4)0.0005 (4)
N30.0193 (5)0.0236 (5)0.0260 (5)0.0001 (4)0.0024 (4)0.0035 (4)
C10.0185 (5)0.0218 (5)0.0206 (5)−0.0041 (4)−0.0026 (4)−0.0023 (4)
C20.0192 (5)0.0212 (5)0.0177 (5)−0.0023 (4)−0.0021 (4)−0.0023 (4)
C110.0165 (5)0.0190 (5)0.0215 (6)−0.0035 (4)−0.0016 (4)−0.0040 (4)
C120.0167 (5)0.0248 (6)0.0298 (6)0.0024 (4)−0.0023 (5)0.0017 (5)
C130.0223 (6)0.0259 (6)0.0278 (6)0.0011 (5)−0.0031 (5)0.0064 (5)
C140.0173 (5)0.0216 (5)0.0209 (5)−0.0031 (4)0.0003 (4)−0.0032 (4)
C150.0148 (5)0.0260 (6)0.0233 (6)−0.0005 (4)−0.0034 (4)−0.0027 (5)
C160.0183 (5)0.0248 (6)0.0201 (5)−0.0016 (4)−0.0047 (4)−0.0010 (4)
Cl1—C141.7435 (12)C11—C161.3967 (16)
S1—C21.6992 (12)C11—C121.3972 (18)
N1—C11.2853 (16)C12—C131.3835 (18)
N1—N21.3824 (14)C12—H120.9500
N2—C21.3530 (15)C13—C141.3898 (17)
N2—H20.863 (19)C13—H130.9500
N3—C21.3211 (16)C14—C151.3851 (17)
N3—H3A0.877 (19)C15—C161.3886 (17)
N3—H3B0.82 (2)C15—H150.9500
C1—C111.4648 (16)C16—H160.9500
C1—H10.9500
C1—N1—N2114.01 (10)C13—C12—C11120.82 (11)
C2—N2—N1120.12 (10)C13—C12—H12119.6
C2—N2—H2119.3 (12)C11—C12—H12119.6
N1—N2—H2118.7 (12)C12—C13—C14119.15 (12)
C2—N3—H3A118.9 (13)C12—C13—H13120.4
C2—N3—H3B119.0 (13)C14—C13—H13120.4
H3A—N3—H3B122.1 (18)C15—C14—C13121.30 (11)
N1—C1—C11121.62 (11)C15—C14—Cl1119.81 (9)
N1—C1—H1119.2C13—C14—Cl1118.88 (10)
C11—C1—H1119.2C14—C15—C16119.00 (11)
N3—C2—N2117.92 (11)C14—C15—H15120.5
N3—C2—S1123.29 (9)C16—C15—H15120.5
N2—C2—S1118.78 (9)C15—C16—C11120.85 (11)
C16—C11—C12118.86 (11)C15—C16—H16119.6
C16—C11—C1118.86 (11)C11—C16—H16119.6
C12—C11—C1122.26 (10)
C1—N1—N2—C2−178.33 (11)C11—C12—C13—C140.5 (2)
N2—N1—C1—C11−176.64 (10)C12—C13—C14—C15−0.6 (2)
N1—N2—C2—N36.86 (18)C12—C13—C14—Cl1−179.11 (10)
N1—N2—C2—S1−173.83 (8)C13—C14—C15—C16−0.29 (19)
N1—C1—C11—C16−168.81 (11)Cl1—C14—C15—C16178.22 (9)
N1—C1—C11—C1213.02 (19)C14—C15—C16—C111.31 (18)
C16—C11—C12—C130.53 (19)C12—C11—C16—C15−1.43 (18)
C1—C11—C12—C13178.70 (12)C1—C11—C16—C15−179.66 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2···S1i0.863 (19)2.628 (19)3.4288 (12)154.7 (16)
N3—H3A···S1ii0.877 (19)2.65 (2)3.5119 (12)170.1 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1i0.863 (19)2.628 (19)3.4288 (12)154.7 (16)
N3—H3A⋯S1ii0.877 (19)2.65 (2)3.5119 (12)170.1 (17)

Symmetry codes: (i) ; (ii) .

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