Literature DB >> 21522398

(1S,3R,8R)-9-(1-Amino-ethyl-idene)-2,2-dichloro-3,7,7-trimethyl-tricyclo-[6.4.0.0]undecan-10-one.

Ahmed Benharref, Essêdiya Lassaba, Daniel Avignant, Abdelghani Oudahmane, Moha Berraho.   

Abstract

The title compound, C(16)H(23)Cl(2)NO, was synthesised from β-himachalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzocyclo-heptene), which was isolated from the essential oil of the Atlas cedar (Cedrus Atlantica). The mol-ecule contains a seven membered ring, which is fused to a five- and a three-membered ring. The five-membered ring has a twisted conformation, whereas the seven-membered ring displays a chair conformation. The dihedral angle between the five- and seven-membered rings is 45.26 (9)°. The absolute structure was established unambiguously from anomalous dispersion effects. In the crystal, mol-ecules are linked into chains propagating along the b axis by inter-molecular N-H⋯O hydrogen bonds; an intramolecular N-H⋯O link also occurs.

Entities:  

Year:  2011        PMID: 21522398      PMCID: PMC3052109          DOI: 10.1107/S1600536811005307

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of β-himachalene, see: Joseph & Dev (1968 ▶); Plattier & Teisseire (1974 ▶). For the reactivity of β-himachalene, see: Lassaba et al. (1998 ▶); Chekroun et al. (2000 ▶); El Jamili et al. (2002 ▶); Dakir et al. (2004 ▶). For the biological activity of β-himachalene, see: Daoubi et al. (2004 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H23Cl2NO M = 316.25 Monoclinic, a = 7.7570 (7) Å b = 9.7041 (9) Å c = 10.6901 (10) Å β = 93.432 (3)° V = 803.25 (13) Å3 Z = 2 Mo Kα radiation μ = 0.40 mm−1 T = 298 K 0.41 × 0.33 × 0.26 mm

Data collection

Bruker APEXII CCD diffractometer 4954 measured reflections 2355 independent reflections 2297 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.080 S = 1.08 2355 reflections 193 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack & Bernardinelli (2000 ▶), 614 Friedel pairs Flack parameter: −0.02 (5) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005307/fj2396sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005307/fj2396Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H23Cl2NOF(000) = 336
Mr = 316.25Dx = 1.308 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 4954 reflections
a = 7.7570 (7) Åθ = 3.4–26.4°
b = 9.7041 (9) ŵ = 0.40 mm1
c = 10.6901 (10) ÅT = 298 K
β = 93.432 (3)°Prism, colourless
V = 803.25 (13) Å30.41 × 0.33 × 0.26 mm
Z = 2
Bruker APEXII CCD diffractometer2297 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.015
graphiteθmax = 26.4°, θmin = 3.4°
ω and φ scansh = −9→9
4954 measured reflectionsk = −12→6
2355 independent reflectionsl = −12→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.080w = 1/[σ2(Fo2) + (0.0528P)2 + 0.0821P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2355 reflectionsΔρmax = 0.24 e Å3
193 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack & Bernardinelli (2000), 614 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.02 (5)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
H21.000 (3)−0.257 (3)0.553 (2)0.042 (6)*
H10.933 (3)−0.125 (4)0.502 (3)0.050 (7)*
Cl10.88492 (8)0.36063 (7)0.85606 (7)0.06081 (18)
Cl20.79425 (7)0.12962 (6)1.00496 (4)0.05055 (16)
C90.7491 (2)−0.0408 (2)0.66044 (16)0.0293 (4)
O10.8629 (2)0.07077 (17)0.48287 (13)0.0448 (4)
C80.6205 (2)0.0004 (2)0.75543 (15)0.0274 (4)
H80.6565−0.03830.83750.033*
C10.6443 (2)0.15793 (19)0.75843 (15)0.0297 (4)
C120.8402 (2)−0.16350 (19)0.65295 (17)0.0321 (4)
C100.7797 (2)0.0713 (2)0.57971 (17)0.0333 (4)
N10.9341 (3)−0.1878 (2)0.5548 (2)0.0444 (4)
C70.4310 (2)−0.0475 (2)0.71640 (17)0.0357 (4)
C30.5434 (3)0.2575 (2)0.83808 (17)0.0362 (4)
C20.7312 (2)0.2285 (2)0.87178 (18)0.0363 (4)
C40.4090 (3)0.2029 (3)0.9238 (2)0.0462 (5)
H4A0.46560.14170.98520.055*
H4B0.36200.27970.96880.055*
C160.4318 (3)−0.2036 (3)0.6976 (2)0.0451 (5)
H16A0.5082−0.22670.63330.068*
H16B0.3171−0.23440.67310.068*
H16C0.4707−0.24780.77450.068*
C110.7012 (3)0.2010 (2)0.62976 (17)0.0386 (5)
H11A0.60330.23110.57590.046*
H11B0.78550.27470.63710.046*
C140.4943 (4)0.3966 (3)0.7812 (2)0.0543 (6)
H14A0.58230.42610.72760.082*
H14B0.48340.46290.84690.082*
H14C0.38630.38870.73300.082*
C50.2612 (3)0.1259 (3)0.8557 (2)0.0551 (6)
H5A0.22600.17570.77980.066*
H5B0.16370.12420.90840.066*
C60.3060 (3)−0.0212 (3)0.8212 (2)0.0491 (5)
H6A0.1986−0.06810.79750.059*
H6B0.3545−0.06570.89660.059*
C150.3604 (3)0.0199 (3)0.5944 (2)0.0512 (6)
H15A0.35400.11780.60580.077*
H15B0.2472−0.01570.57210.077*
H15C0.4358−0.00030.52870.077*
C130.8492 (3)−0.2716 (3)0.7522 (2)0.0488 (5)
H13A0.9673−0.29810.77000.073*
H13B0.7832−0.35040.72360.073*
H13C0.8028−0.23580.82680.073*
U11U22U33U12U13U23
Cl10.0562 (3)0.0361 (3)0.0907 (4)−0.0136 (3)0.0093 (3)−0.0118 (3)
Cl20.0568 (3)0.0510 (3)0.0424 (2)0.0037 (3)−0.0094 (2)−0.0038 (2)
C90.0310 (8)0.0247 (9)0.0331 (8)−0.0017 (7)0.0087 (6)−0.0004 (7)
O10.0579 (9)0.0357 (8)0.0439 (7)−0.0015 (7)0.0276 (6)0.0035 (6)
C80.0315 (8)0.0246 (9)0.0266 (7)−0.0005 (7)0.0060 (6)0.0011 (6)
C10.0335 (8)0.0239 (10)0.0326 (8)0.0028 (7)0.0085 (6)0.0003 (7)
C120.0317 (8)0.0242 (11)0.0406 (9)−0.0021 (7)0.0043 (7)−0.0033 (7)
C100.0380 (9)0.0274 (10)0.0354 (8)−0.0023 (8)0.0103 (7)0.0017 (7)
N10.0467 (10)0.0312 (10)0.0571 (11)0.0074 (9)0.0187 (8)−0.0038 (10)
C70.0328 (9)0.0380 (11)0.0365 (9)−0.0049 (8)0.0048 (7)−0.0009 (8)
C30.0429 (10)0.0292 (10)0.0372 (9)0.0069 (8)0.0097 (7)−0.0042 (8)
C20.0410 (10)0.0262 (10)0.0419 (9)−0.0012 (8)0.0055 (8)−0.0051 (8)
C40.0469 (11)0.0492 (14)0.0444 (10)0.0094 (10)0.0175 (8)−0.0066 (10)
C160.0449 (11)0.0412 (13)0.0493 (11)−0.0131 (10)0.0039 (9)−0.0024 (10)
C110.0546 (12)0.0245 (10)0.0382 (9)0.0020 (8)0.0159 (8)0.0049 (8)
C140.0698 (15)0.0353 (13)0.0589 (13)0.0194 (11)0.0119 (11)−0.0001 (11)
C50.0365 (10)0.0652 (17)0.0656 (12)0.0064 (12)0.0196 (9)−0.0057 (14)
C60.0361 (10)0.0549 (15)0.0579 (12)−0.0084 (10)0.0156 (9)−0.0035 (11)
C150.0459 (12)0.0577 (16)0.0484 (11)0.0006 (11)−0.0093 (9)0.0019 (11)
C130.0531 (12)0.0324 (12)0.0613 (12)0.0075 (10)0.0052 (10)0.0115 (10)
Cl1—C21.766 (2)C4—C51.517 (4)
Cl2—C21.762 (2)C4—H4A0.9700
C9—C121.389 (3)C4—H4B0.9700
C9—C101.418 (3)C16—H16A0.9600
C9—C81.519 (2)C16—H16B0.9600
O1—C101.253 (2)C16—H16C0.9600
C8—C11.539 (3)C11—H11A0.9700
C8—C71.574 (2)C11—H11B0.9700
C8—H80.9800C14—H14A0.9600
C1—C21.515 (3)C14—H14B0.9600
C1—C111.528 (2)C14—H14C0.9600
C1—C31.533 (2)C5—C61.519 (4)
C12—N11.334 (3)C5—H5A0.9700
C12—C131.490 (3)C5—H5B0.9700
C10—C111.509 (3)C6—H6A0.9700
N1—H20.84 (3)C6—H6B0.9700
N1—H10.83 (3)C15—H15A0.9600
C7—C161.528 (3)C15—H15B0.9600
C7—C151.531 (3)C15—H15C0.9600
C7—C61.546 (3)C13—H13A0.9600
C3—C21.506 (3)C13—H13B0.9600
C3—C141.520 (3)C13—H13C0.9600
C3—C41.524 (3)
C12—C9—C10121.23 (16)C5—C4—H4B108.7
C12—C9—C8128.39 (17)C3—C4—H4B108.7
C10—C9—C8110.19 (16)H4A—C4—H4B107.6
C9—C8—C1101.12 (14)C7—C16—H16A109.5
C9—C8—C7112.64 (14)C7—C16—H16B109.5
C1—C8—C7114.08 (16)H16A—C16—H16B109.5
C9—C8—H8109.6C7—C16—H16C109.5
C1—C8—H8109.6H16A—C16—H16C109.5
C7—C8—H8109.6H16B—C16—H16C109.5
C2—C1—C11117.28 (17)C10—C11—C1103.64 (15)
C2—C1—C359.21 (12)C10—C11—H11A111.0
C11—C1—C3120.82 (16)C1—C11—H11A111.0
C2—C1—C8120.85 (16)C10—C11—H11B111.0
C11—C1—C8107.05 (14)C1—C11—H11B111.0
C3—C1—C8124.93 (16)H11A—C11—H11B109.0
N1—C12—C9120.03 (19)C3—C14—H14A109.5
N1—C12—C13115.56 (19)C3—C14—H14B109.5
C9—C12—C13124.34 (17)H14A—C14—H14B109.5
O1—C10—C9127.82 (19)C3—C14—H14C109.5
O1—C10—C11122.38 (17)H14A—C14—H14C109.5
C9—C10—C11109.76 (15)H14B—C14—H14C109.5
C12—N1—H2120.9 (16)C4—C5—C6113.71 (19)
C12—N1—H1115.2 (19)C4—C5—H5A108.8
H2—N1—H1123 (2)C6—C5—H5A108.8
C16—C7—C15108.37 (18)C4—C5—H5B108.8
C16—C7—C6105.49 (18)C6—C5—H5B108.8
C15—C7—C6109.80 (18)H5A—C5—H5B107.7
C16—C7—C8108.48 (17)C5—C6—C7119.6 (2)
C15—C7—C8112.35 (17)C5—C6—H6A107.4
C6—C7—C8112.04 (16)C7—C6—H6A107.4
C2—C3—C14118.5 (2)C5—C6—H6B107.4
C2—C3—C4118.56 (17)C7—C6—H6B107.4
C14—C3—C4112.69 (18)H6A—C6—H6B107.0
C2—C3—C159.77 (12)C7—C15—H15A109.5
C14—C3—C1117.47 (17)C7—C15—H15B109.5
C4—C3—C1120.35 (18)H15A—C15—H15B109.5
C3—C2—C161.01 (12)C7—C15—H15C109.5
C3—C2—Cl2120.86 (14)H15A—C15—H15C109.5
C1—C2—Cl2119.26 (15)H15B—C15—H15C109.5
C3—C2—Cl1119.40 (16)C12—C13—H13A109.5
C1—C2—Cl1121.53 (14)C12—C13—H13B109.5
Cl2—C2—Cl1108.41 (11)H13A—C13—H13B109.5
C5—C4—C3114.04 (18)C12—C13—H13C109.5
C5—C4—H4A108.7H13A—C13—H13C109.5
C3—C4—H4A108.7H13B—C13—H13C109.5
D—H···AD—HH···AD···AD—H···A
N1—H2···O1i0.85 (3)2.03 (3)2.865 (3)170 (2)
N1—H1···O10.83 (4)1.98 (4)2.672 (3)140 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H2⋯O1i0.85 (3)2.03 (3)2.865 (3)170 (2)
N1—H1⋯O10.83 (4)1.98 (4)2.672 (3)140 (3)

Symmetry code: (i) .

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4.  Structure validation in chemical crystallography.

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