Literature DB >> 21522347

l-Alanine methyl ester hydro-chloride monohydrate.

Martin Lutz1, Arie Schouten.   

Abstract

The enanti-opure title compound, C(4)H(10)NO(2) (+)·Cl(-)·H(2)O, forms a two-dimensional network by inter-molecular hydrogen bonding parallel to (010). Non-merohedral twinning with a twofold rotation about the reciprocal c* axis as twin operation was taken into account during intensity integration and structure refinement. This twinning leads to alternative orientations of the stacked hydrogen-bonded layers.

Entities:  

Year:  2011        PMID: 21522347      PMCID: PMC3052139          DOI: 10.1107/S160053681100420X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the related l-serine methyl ester hydro­chloride, see: Schouten & Lutz (2009 ▶). For the theory of twin formation, see: Cahn (1954 ▶). Twin integration is based on Schreurs et al. (2010 ▶) and the twin refinement on Herbst-Irmer & Sheldrick (2002 ▶). The methods of Flack (1983 ▶) and Hooft et al. (2008 ▶) were used for the absolute structure determination.

Experimental

Crystal data

C4H10NO2 +·Cl−·H2O M = 157.60 Triclinic, a = 4.9461 (4) Å b = 6.0134 (4) Å c = 6.6853 (5) Å α = 101.833 (4)° β = 93.533 (3)° γ = 92.112 (4)° V = 194.00 (2) Å3 Z = 1 Mo Kα radiation μ = 0.44 mm−1 T = 110 K 0.39 × 0.29 × 0.12 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (TWINABS-2008/4; Sheldrick, 2008a ▶) T min = 0.69, T max = 0.75 11388 measured reflections 3213 independent reflections 3180 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.015 wR(F 2) = 0.043 S = 1.05 3213 reflections 133 parameters 3 restraints All H-atom parameters refined Δρmax = 0.20 e Å−3 Δρmin = −0.13 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: PEAKREF (Schreurs, 2008 ▶); data reduction: Eval15 (Schreurs et al., 2010 ▶) and TWINABS-2008/4 (Sheldrick, 2008a ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: manual editing of SHELXL CIF file. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681100420X/ez2229sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100420X/ez2229Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10NO2+·Cl·H2OZ = 1
Mr = 157.60F(000) = 84
Triclinic, P1Dx = 1.349 Mg m3
Hall symbol: P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.9461 (4) ÅCell parameters from 5169 reflections
b = 6.0134 (4) Åθ = 3.5–27.5°
c = 6.6853 (5) ŵ = 0.44 mm1
α = 101.833 (4)°T = 110 K
β = 93.533 (3)°Plate, colourless
γ = 92.112 (4)°0.39 × 0.29 × 0.12 mm
V = 194.00 (2) Å3
Nonius KappaCCD diffractometer3213 independent reflections
Radiation source: rotating anode3180 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 27.7°, θmin = 3.1°
Absorption correction: multi-scan (TWINABS-2008/4; Sheldrick, 2008a)h = −6→6
Tmin = 0.69, Tmax = 0.75k = −7→7
11388 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.015Hydrogen site location: difference Fourier map
wR(F2) = 0.043All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0283P)2 + 0.0041P] where P = (Fo2 + 2Fc2)/3
3213 reflections(Δ/σ)max = 0.005
133 parametersΔρmax = 0.20 e Å3
3 restraintsΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.52552 (12)0.30665 (9)0.60201 (9)0.01877 (12)
O20.74232 (12)0.64013 (9)0.59202 (9)0.01863 (12)
N10.29086 (13)0.79507 (11)0.43187 (9)0.01456 (12)
H1N0.447 (2)0.8444 (16)0.3859 (16)0.018 (2)*
H2N0.143 (2)0.8271 (19)0.3614 (17)0.021 (3)*
H3N0.284 (2)0.8560 (18)0.5673 (18)0.021 (2)*
C10.54988 (14)0.50654 (11)0.54561 (10)0.01343 (14)
C20.30541 (15)0.54425 (12)0.41118 (12)0.01473 (14)
H20.150 (2)0.4952 (16)0.4556 (15)0.016 (2)*
C30.3288 (2)0.42892 (16)0.18812 (15)0.02366 (18)
H3A0.171 (3)0.452 (2)0.110 (2)0.047 (4)*
H3B0.494 (4)0.489 (3)0.146 (3)0.060 (5)*
H3C0.331 (2)0.273 (2)0.1796 (19)0.031 (3)*
C40.75776 (19)0.25176 (15)0.72382 (14)0.02231 (18)
H4A0.909 (3)0.225 (2)0.644 (2)0.040 (3)*
H4B0.695 (4)0.118 (3)0.779 (3)0.064 (4)*
H4C0.819 (4)0.360 (3)0.821 (3)0.052 (4)*
Cl10.793162 (15)0.934964 (15)0.171315 (15)0.01891 (5)
O30.26844 (13)0.86392 (12)0.85023 (9)0.02491 (13)
H1O0.415 (4)0.880 (3)0.930 (3)0.057 (5)*
H2O0.133 (3)0.878 (2)0.912 (2)0.044 (4)*
U11U22U33U12U13U23
O10.0167 (3)0.0218 (3)0.0201 (3)−0.0007 (2)−0.0021 (2)0.0111 (2)
O20.0107 (3)0.0205 (3)0.0253 (3)0.0016 (2)−0.0013 (2)0.0067 (2)
N10.0123 (3)0.0188 (3)0.0132 (3)0.0052 (2)0.0008 (2)0.0038 (2)
C10.0107 (4)0.0182 (3)0.0123 (3)0.0038 (3)0.0042 (3)0.0038 (3)
C20.0098 (3)0.0180 (3)0.0176 (3)0.0008 (2)0.0007 (3)0.0066 (3)
C30.0296 (6)0.0195 (3)0.0186 (4)0.0036 (3)−0.0074 (4)−0.0013 (3)
C40.0195 (4)0.0277 (4)0.0231 (4)0.0026 (3)−0.0034 (4)0.0143 (3)
Cl10.01091 (8)0.03258 (8)0.01630 (8)0.00378 (5)0.00140 (5)0.01156 (6)
O30.0129 (3)0.0475 (4)0.0132 (3)0.0008 (3)0.0011 (2)0.0038 (2)
O1—C11.3351 (8)C2—H20.901 (11)
O1—C41.4541 (10)C3—H3A0.939 (14)
O2—C11.2052 (9)C3—H3B0.961 (18)
N1—C21.4909 (9)C3—H3C0.930 (12)
N1—H1N0.909 (11)C4—H4A0.947 (14)
N1—H2N0.895 (12)C4—H4B1.001 (17)
N1—H3N0.908 (12)C4—H4C0.854 (18)
C1—C21.5137 (10)O3—H1O0.860 (18)
C2—C31.5236 (12)O3—H2O0.808 (17)
C1—O1—C4115.00 (6)C3—C2—H2109.9 (6)
C2—N1—H1N106.5 (6)C2—C3—H3A109.1 (9)
C2—N1—H2N110.3 (7)C2—C3—H3B107.1 (10)
H1N—N1—H2N112.5 (10)H3A—C3—H3B114.5 (13)
C2—N1—H3N107.0 (7)C2—C3—H3C108.4 (8)
H1N—N1—H3N110.0 (10)H3A—C3—H3C105.7 (11)
H2N—N1—H3N110.2 (10)H3B—C3—H3C111.9 (12)
O2—C1—O1125.01 (7)O1—C4—H4A110.8 (9)
O2—C1—C2123.63 (6)O1—C4—H4B105.5 (10)
O1—C1—C2111.36 (6)H4A—C4—H4B113.8 (13)
N1—C2—C1106.75 (6)O1—C4—H4C114.3 (11)
N1—C2—C3110.50 (6)H4A—C4—H4C102.3 (14)
C1—C2—C3111.57 (6)H4B—C4—H4C110.4 (15)
N1—C2—H2106.5 (6)H1O—O3—H2O112.9 (15)
C1—C2—H2111.5 (6)
C4—O1—C1—O2−1.75 (11)O1—C1—C2—N1155.83 (6)
C4—O1—C1—C2177.22 (6)O2—C1—C2—C395.64 (9)
O2—C1—C2—N1−25.18 (9)O1—C1—C2—C3−83.35 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl10.909 (11)2.418 (11)3.3007 (7)163.9 (9)
N1—H2N···Cl1i0.895 (12)2.275 (12)3.1665 (6)174.2 (10)
N1—H3N···O30.908 (12)1.888 (12)2.7519 (9)158.2 (9)
O3—H1O···Cl1ii0.860 (18)2.364 (18)3.2220 (7)175.1 (15)
O3—H2O···Cl1iii0.808 (17)2.470 (17)3.2613 (7)166.9 (14)
C2—H2···O2i0.901 (11)2.385 (10)3.1302 (9)140.0 (8)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯Cl10.909 (11)2.418 (11)3.3007 (7)163.9 (9)
N1—H2N⋯Cl1i0.895 (12)2.275 (12)3.1665 (6)174.2 (10)
N1—H3N⋯O30.908 (12)1.888 (12)2.7519 (9)158.2 (9)
O3—H1O⋯Cl1ii0.860 (18)2.364 (18)3.2220 (7)175.1 (15)
O3—H2O⋯Cl1iii0.808 (17)2.470 (17)3.2613 (7)166.9 (14)
C2—H2⋯O2i0.901 (11)2.385 (10)3.1302 (9)140.0 (8)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Refinement of obverse/reverse twins.

Authors:  Regine Herbst-Irmer; George M Sheldrick
Journal:  Acta Crystallogr B       Date:  2002-05-29

3.  l-Serine methyl ester hydro-chloride.

Authors:  Arie Schouten; Martin Lutz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

4.  Determination of absolute structure using Bayesian statistics on Bijvoet differences.

Authors:  Rob W W Hooft; Leo H Straver; Anthony L Spek
Journal:  J Appl Crystallogr       Date:  2008-01-16       Impact factor: 3.304

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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