Literature DB >> 21522253

Bis[N-(2-hy-droxy-eth-yl)-N-propyl-dithio-carbamato-κS,S']bis-(4-{[(pyridin-4-yl-methyl-idene)hydrazinyl-idene]meth-yl}pyridine-κN)cadmium.

Grant A Broker, Edward R T Tiekink.   

Abstract

The complete mol-ecule of the title compound, [Cd(C(6)H(12)NOS(2))(2)(C(12)H(10)N(4))(2)], is generated by crystallographic inversion symmetry. The distorted octa-hedral trans-N(2)S(4) donor set for the Cd(2+) ion is defined by two symmetrically S,S'-chelating dithio-carbamate anions and two pyridine N atoms derived from two monodentate 4-pyridine-aldazine (or 4-{[(pyridin-4-yl-methyl-idene)hydrazinyl-idene}meth-yl]pyridine) mol-ecules [dihedral angle between the aromatic rings = 17.33 (8)°]. In the crystal, mol-ecules are connected into a supra-molecular chain via O-H⋯N hydrogen bonds involving the 4-pyridine-aldazine N atoms not involved in coordination to cadmium. Weak C-H⋯O and C-H⋯N links consolidate the packing.

Entities:  

Year:  2011        PMID: 21522253      PMCID: PMC3052135          DOI: 10.1107/S1600536811004508

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to supra­molecular coordination polymers of zinc-triad 1,1-dithiol­ates, see: Tiekink (2003 ▶). For the use of steric effects to control supra­molecular aggregation patterns, see: Chen et al. (2006 ▶). For structural studies on hydroxyl-substituted dithio­carbamate ligands, see Benson et al. (2007 ▶); Song & Tiekink (2009 ▶).

Experimental

Crystal data

[Cd(C6H12NOS2)2(C12H10N4)2] M = 889.45 Triclinic, a = 8.532 (3) Å b = 10.951 (4) Å c = 11.184 (5) Å α = 79.59 (3)° β = 88.06 (3)° γ = 78.23 (2)° V = 1006.2 (7) Å3 Z = 1 Mo Kα radiation μ = 0.80 mm−1 T = 98 K 0.25 × 0.16 × 0.04 mm

Data collection

Rigaku AFC12/SATURN724 CCD diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.719, T max = 1 10677 measured reflections 4150 independent reflections 4009 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.062 S = 1.08 4150 reflections 245 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: PATTY in DIRDIF (Beurskens et al., 1992 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004508/hb5795sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004508/hb5795Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C6H12NOS2)2(C12H10N4)2]Z = 1
Mr = 889.45F(000) = 458
Triclinic, P1Dx = 1.468 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71070 Å
a = 8.532 (3) ÅCell parameters from 3485 reflections
b = 10.951 (4) Åθ = 2.4–30.3°
c = 11.184 (5) ŵ = 0.80 mm1
α = 79.59 (3)°T = 98 K
β = 88.06 (3)°Plate, yellow
γ = 78.23 (2)°0.25 × 0.16 × 0.04 mm
V = 1006.2 (7) Å3
Rigaku AFC12K/SATURN724 CCD diffractometer4150 independent reflections
Radiation source: fine-focus sealed tube4009 reflections with I > 2σ(I)
graphiteRint = 0.023
ω scansθmax = 26.5°, θmin = 2.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.719, Tmax = 1k = −13→12
10677 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.062H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0288P)2 + 0.6008P] where P = (Fo2 + 2Fc2)/3
4150 reflections(Δ/σ)max < 0.001
245 parametersΔρmax = 0.40 e Å3
1 restraintΔρmin = −0.40 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd0.50000.50000.50000.01706 (6)
S10.67567 (5)0.26992 (4)0.55937 (3)0.01562 (9)
S20.48740 (5)0.36286 (4)0.32801 (4)0.01587 (9)
O10.88422 (15)0.05660 (12)0.17754 (11)0.0223 (3)
H1o0.954 (2)0.094 (2)0.1432 (19)0.033*
N10.67484 (15)0.13324 (12)0.38469 (11)0.0120 (3)
N20.26143 (17)0.42763 (14)0.61140 (13)0.0192 (3)
N3−0.25800 (17)0.36129 (14)0.82625 (13)0.0194 (3)
N4−0.37162 (17)0.28924 (14)0.87834 (12)0.0191 (3)
N5−0.88990 (18)0.19365 (15)1.06431 (14)0.0245 (3)
C10.61822 (18)0.24449 (15)0.41986 (14)0.0135 (3)
C20.62455 (19)0.10536 (15)0.26935 (14)0.0156 (3)
H2A0.51390.15260.25010.019*
H2B0.62390.01380.27960.019*
C30.7325 (2)0.14035 (16)0.16368 (15)0.0196 (3)
H3A0.68240.13560.08660.024*
H3B0.74650.22850.16010.024*
C40.79259 (19)0.03218 (15)0.45840 (14)0.0150 (3)
H4A0.86040.07170.50370.018*
H4B0.8630−0.01580.40330.018*
C50.7154 (2)−0.05962 (16)0.54826 (15)0.0185 (3)
H5A0.6421−0.09570.50430.022*
H5B0.6517−0.01370.60800.022*
C60.8430 (2)−0.16666 (17)0.61485 (17)0.0239 (4)
H6A0.7911−0.22540.67150.036*
H6B0.9137−0.13110.66020.036*
H6C0.9059−0.21210.55570.036*
C70.1257 (2)0.50814 (17)0.63223 (18)0.0254 (4)
H70.11970.59630.60490.031*
C8−0.0057 (2)0.46933 (17)0.69130 (17)0.0238 (4)
H8−0.09890.52970.70410.029*
C90.0008 (2)0.34018 (16)0.73174 (14)0.0169 (3)
C100.1403 (2)0.25663 (16)0.70970 (16)0.0203 (3)
H100.14930.16790.73520.024*
C110.2661 (2)0.30418 (16)0.65018 (16)0.0205 (3)
H110.36080.24580.63620.025*
C12−0.1326 (2)0.28869 (16)0.79403 (14)0.0177 (3)
H12−0.12550.19950.81070.021*
C13−0.5012 (2)0.35972 (17)0.90688 (15)0.0200 (3)
H13−0.51190.44920.89290.024*
C14−0.6338 (2)0.30118 (17)0.96168 (14)0.0188 (3)
C15−0.7640 (2)0.37321 (18)1.01209 (17)0.0248 (4)
H15−0.76810.46041.01270.030*
C16−0.8877 (2)0.31554 (19)1.06143 (17)0.0269 (4)
H16−0.97620.36591.09520.032*
C17−0.7628 (2)0.12403 (18)1.01712 (16)0.0247 (4)
H17−0.76120.03671.01920.030*
C18−0.6341 (2)0.17338 (18)0.96559 (16)0.0228 (4)
H18−0.54680.12060.93320.027*
U11U22U33U12U13U23
Cd0.01757 (10)0.01303 (10)0.02083 (10)−0.00255 (7)0.00354 (7)−0.00493 (7)
S10.0170 (2)0.01481 (19)0.01487 (19)−0.00153 (15)−0.00065 (15)−0.00389 (15)
S20.0170 (2)0.01234 (19)0.0169 (2)−0.00014 (15)−0.00203 (15)−0.00179 (15)
O10.0183 (6)0.0224 (6)0.0251 (6)−0.0043 (5)0.0080 (5)−0.0026 (5)
N10.0114 (6)0.0119 (6)0.0122 (6)−0.0014 (5)−0.0004 (5)−0.0016 (5)
N20.0185 (7)0.0181 (7)0.0218 (7)−0.0050 (6)0.0034 (6)−0.0048 (6)
N30.0178 (7)0.0218 (7)0.0184 (7)−0.0064 (6)0.0024 (5)−0.0007 (6)
N40.0188 (7)0.0228 (7)0.0161 (7)−0.0080 (6)0.0024 (5)−0.0003 (6)
N50.0222 (8)0.0305 (9)0.0219 (8)−0.0094 (7)0.0047 (6)−0.0035 (6)
C10.0114 (7)0.0144 (8)0.0147 (7)−0.0042 (6)0.0032 (6)−0.0014 (6)
C20.0165 (8)0.0145 (8)0.0158 (8)−0.0018 (6)0.0002 (6)−0.0037 (6)
C30.0222 (9)0.0195 (8)0.0156 (8)−0.0012 (7)0.0027 (6)−0.0030 (6)
C40.0127 (7)0.0138 (8)0.0169 (8)0.0004 (6)−0.0007 (6)−0.0020 (6)
C50.0167 (8)0.0168 (8)0.0210 (8)−0.0043 (7)0.0009 (6)−0.0003 (6)
C60.0224 (9)0.0202 (9)0.0266 (9)−0.0051 (7)−0.0034 (7)0.0044 (7)
C70.0230 (9)0.0162 (8)0.0348 (10)−0.0033 (7)0.0087 (8)−0.0008 (7)
C80.0174 (9)0.0198 (9)0.0320 (10)−0.0012 (7)0.0055 (7)−0.0023 (7)
C90.0168 (8)0.0207 (8)0.0146 (8)−0.0062 (7)0.0003 (6)−0.0039 (6)
C100.0217 (9)0.0158 (8)0.0245 (9)−0.0048 (7)0.0021 (7)−0.0055 (7)
C110.0193 (8)0.0175 (8)0.0259 (9)−0.0031 (7)0.0036 (7)−0.0083 (7)
C120.0181 (8)0.0198 (8)0.0153 (8)−0.0055 (7)−0.0024 (6)−0.0015 (6)
C130.0198 (9)0.0213 (9)0.0178 (8)−0.0049 (7)0.0006 (6)0.0003 (7)
C140.0171 (8)0.0241 (9)0.0146 (8)−0.0054 (7)0.0000 (6)−0.0003 (6)
C150.0238 (9)0.0215 (9)0.0283 (9)−0.0043 (7)0.0040 (7)−0.0039 (7)
C160.0206 (9)0.0304 (10)0.0290 (10)−0.0037 (8)0.0076 (7)−0.0062 (8)
C170.0255 (9)0.0246 (9)0.0260 (9)−0.0096 (8)0.0052 (7)−0.0056 (7)
C180.0216 (9)0.0248 (9)0.0229 (9)−0.0054 (7)0.0045 (7)−0.0067 (7)
Cd—S12.6379 (10)C4—H4B0.9900
Cd—S22.6626 (10)C5—C61.527 (2)
Cd—N22.5403 (17)C5—H5A0.9900
Cd—S1i2.6379 (10)C5—H5B0.9900
Cd—S2i2.6626 (10)C6—H6A0.9800
Cd—N2i2.5403 (17)C6—H6B0.9800
S1—C11.7369 (17)C6—H6C0.9800
S2—C11.7286 (18)C7—C81.385 (2)
O1—C31.421 (2)C7—H70.9500
O1—H1o0.835 (10)C8—C91.395 (2)
N1—C11.339 (2)C8—H80.9500
N1—C21.475 (2)C9—C101.390 (2)
N1—C41.479 (2)C9—C121.471 (2)
N2—C111.336 (2)C10—C111.386 (2)
N2—C71.347 (2)C10—H100.9500
N3—C121.280 (2)C11—H110.9500
N3—N41.418 (2)C12—H120.9500
N4—C131.279 (2)C13—C141.475 (2)
N5—C161.333 (3)C13—H130.9500
N5—C171.344 (2)C14—C151.391 (2)
C2—C31.516 (2)C14—C181.393 (3)
C2—H2A0.9900C15—C161.388 (3)
C2—H2B0.9900C15—H150.9500
C3—H3A0.9900C16—H160.9500
C3—H3B0.9900C17—C181.385 (2)
C4—C51.521 (2)C17—H170.9500
C4—H4A0.9900C18—H180.9500
N2i—Cd—N2180C4—C5—C6110.58 (14)
N2i—Cd—S189.42 (4)C4—C5—H5A109.5
N2—Cd—S190.58 (4)C6—C5—H5A109.5
N2i—Cd—S1i90.58 (4)C4—C5—H5B109.5
N2—Cd—S1i89.42 (4)C6—C5—H5B109.5
S1—Cd—S1i180H5A—C5—H5B108.1
N2i—Cd—S287.62 (4)C5—C6—H6A109.5
N2—Cd—S292.38 (4)C5—C6—H6B109.5
S1—Cd—S268.83 (3)H6A—C6—H6B109.5
S1i—Cd—S2111.17 (3)C5—C6—H6C109.5
N2i—Cd—S2i92.38 (4)H6A—C6—H6C109.5
N2—Cd—S2i87.62 (4)H6B—C6—H6C109.5
S1—Cd—S2i111.17 (3)N2—C7—C8123.52 (17)
S1i—Cd—S2i68.83 (3)N2—C7—H7118.2
S2—Cd—S2i180C8—C7—H7118.2
C1—S1—Cd86.05 (6)C7—C8—C9119.02 (16)
C1—S2—Cd85.43 (6)C7—C8—H8120.5
C3—O1—H1o109.5 (16)C9—C8—H8120.5
C1—N1—C2121.74 (13)C10—C9—C8117.67 (15)
C1—N1—C4121.96 (13)C10—C9—C12118.88 (15)
C2—N1—C4116.29 (13)C8—C9—C12123.44 (16)
C11—N2—C7116.95 (15)C11—C10—C9119.30 (16)
C11—N2—Cd119.88 (11)C11—C10—H10120.3
C7—N2—Cd123.16 (11)C9—C10—H10120.3
C12—N3—N4110.47 (14)N2—C11—C10123.54 (16)
C13—N4—N3111.93 (14)N2—C11—H11118.2
C16—N5—C17116.98 (16)C10—C11—H11118.2
N1—C1—S2120.59 (12)N3—C12—C9121.48 (16)
N1—C1—S1119.77 (12)N3—C12—H12119.3
S2—C1—S1119.64 (10)C9—C12—H12119.3
N1—C2—C3113.01 (13)N4—C13—C14119.59 (16)
N1—C2—H2A109.0N4—C13—H13120.2
C3—C2—H2A109.0C14—C13—H13120.2
N1—C2—H2B109.0C15—C14—C18117.63 (16)
C3—C2—H2B109.0C15—C14—C13120.38 (16)
H2A—C2—H2B107.8C18—C14—C13121.99 (16)
O1—C3—C2110.27 (14)C16—C15—C14118.89 (17)
O1—C3—H3A109.6C16—C15—H15120.6
C2—C3—H3A109.6C14—C15—H15120.6
O1—C3—H3B109.6N5—C16—C15123.90 (17)
C2—C3—H3B109.6N5—C16—H16118.0
H3A—C3—H3B108.1C15—C16—H16118.0
N1—C4—C5113.22 (13)N5—C17—C18123.21 (17)
N1—C4—H4A108.9N5—C17—H17118.4
C5—C4—H4A108.9C18—C17—H17118.4
N1—C4—H4B108.9C17—C18—C14119.38 (17)
C5—C4—H4B108.9C17—C18—H18120.3
H4A—C4—H4B107.7C14—C18—H18120.3
N2i—Cd—S1—C1−86.27 (7)C4—N1—C2—C3−87.99 (17)
N2—Cd—S1—C193.73 (7)N1—C2—C3—O170.19 (17)
S1i—Cd—S1—C195 (100)C1—N1—C4—C590.95 (18)
S2—Cd—S1—C11.40 (5)C2—N1—C4—C5−89.78 (16)
S2i—Cd—S1—C1−178.60 (5)N1—C4—C5—C6175.96 (13)
N2i—Cd—S2—C188.89 (7)C11—N2—C7—C80.3 (3)
N2—Cd—S2—C1−91.11 (7)Cd—N2—C7—C8179.02 (14)
S1—Cd—S2—C1−1.41 (5)N2—C7—C8—C9−0.1 (3)
S1i—Cd—S2—C1178.59 (5)C7—C8—C9—C10−0.3 (3)
S2i—Cd—S2—C1−29 (100)C7—C8—C9—C12−179.20 (17)
N2i—Cd—N2—C11−146 (100)C8—C9—C10—C110.5 (2)
S1—Cd—N2—C11−10.78 (13)C12—C9—C10—C11179.47 (15)
S1i—Cd—N2—C11169.22 (13)C7—N2—C11—C10−0.1 (3)
S2—Cd—N2—C1158.06 (13)Cd—N2—C11—C10−178.83 (13)
S2i—Cd—N2—C11−121.94 (13)C9—C10—C11—N2−0.3 (3)
N2i—Cd—N2—C735 (100)N4—N3—C12—C9176.90 (14)
S1—Cd—N2—C7170.58 (14)C10—C9—C12—N3173.70 (15)
S1i—Cd—N2—C7−9.42 (14)C8—C9—C12—N3−7.4 (3)
S2—Cd—N2—C7−120.58 (14)N3—N4—C13—C14179.61 (14)
S2i—Cd—N2—C759.42 (14)N4—C13—C14—C15169.03 (16)
C12—N3—N4—C13−177.28 (14)N4—C13—C14—C18−10.7 (3)
C2—N1—C1—S2−2.1 (2)C18—C14—C15—C16−1.1 (3)
C4—N1—C1—S2177.14 (10)C13—C14—C15—C16179.14 (16)
C2—N1—C1—S1177.52 (10)C17—N5—C16—C150.6 (3)
C4—N1—C1—S1−3.2 (2)C14—C15—C16—N50.4 (3)
Cd—S2—C1—N1−178.09 (12)C16—N5—C17—C18−0.8 (3)
Cd—S2—C1—S12.29 (8)N5—C17—C18—C140.1 (3)
Cd—S1—C1—N1178.07 (12)C15—C14—C18—C170.9 (3)
Cd—S1—C1—S2−2.31 (8)C13—C14—C18—C17−179.34 (16)
C1—N1—C2—C391.28 (18)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N5ii0.84 (2)1.98 (2)2.810 (2)176 (2)
C10—H10···O1iii0.952.553.480 (3)168
C3—H3a···N4iv0.992.613.369 (3)134
Cd—S12.6379 (10)
Cd—S22.6626 (10)
Cd—N22.5403 (17)
S1—Cd—S268.83 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N5i0.84 (2)1.98 (2)2.810 (2)176 (2)
C10—H10⋯O1ii0.952.553.480 (3)168
C3—H3a⋯N4iii0.992.613.369 (3)134

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2,2'-Bipyrid-yl)bis-[N-(2-hydroxy-ethyl)-N-n-propyl-dithio-carbamato-κS,S']cadmium(II) acetonitrile solvate.

Authors:  Juyoung C Song; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-25
  2 in total
  6 in total

1.  (2,2'-Bipyridine-κN,N')bis-(N-isopropyl-N-methyl-dithio-carbamato-κS,S')cadmium.

Authors:  Nor Asiken Abdul Wahab; Ibrahim Baba; Mohamed Ibrahim Mohamed Tahir; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-07

2.  Bis[N-2-hy-droxy-ethyl,N-methyl-dithio-carbamato-κ2S,S)'-4-{[(pyridin-4-yl-methyl-idene)hydrazinyl-idene}meth-yl]pyridine-κN1)zinc(II): crystal structure and Hirshfeld surface analysis.

Authors:  Grant A Broker; Mukesh M Jotani; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-15

3.  Bis[N-(2-hy-droxy-eth-yl)-N-iso-propyl-dithio-carbamato-κ(2) S,S'](piperazine-κN)cadmium: crystal structure and Hirshfeld surface analysis.

Authors:  Siti Artikah M Safbri; Siti Nadiah Abdul Halim; Mukesh M Jotani; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-13

4.  Crystal structures of (2,2'-bipyridyl-κ(2) N,N')bis-[N,N-bis-(2-hydroxy-eth-yl)di-thio-carbamato-κ(2) S,S']zinc dihydrate and (2,2'-bipyridyl-κ(2) N,N')bis-[N-(2-hydroxy-eth-yl)-N-iso-propyl-dithio-carbamato-κ(2) S,S']zinc.

Authors:  Siti Artikah M Safbri; Siti Nadiah Abdul Halim; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-20

5.  Crystal structure of (4,4'-bipyridyl-κN)bis-[N-(2-hydroxy-ethyl)-N-iso-propyl-dithio-carbamato-κ2S,S']zinc(II)-4,4'-bipyridyl (2/1) and its isostructural cadmium(II) analogue.

Authors:  Yee Seng Tan; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-10-13

6.  A two-dimensional coordination polymer: poly[[bis-[μ2-N-ethyl-N-(pyridin-4-ylmeth-yl)di-thio-carbamato-κ3N:S,S']cadmium(II)] 3-methyl-pyridine monosolvate].

Authors:  Hadi D Arman; Pavel Poplaukhin; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-03-10
  6 in total

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